Wall clock time and date at job start Sat Apr 11 2020 06:41:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.09004 * 109.46741 * 2 1
4 4 C 1.52997 * 109.47236 * 239.99889 * 2 1 3
5 5 C 1.50701 * 109.47212 * 64.99766 * 4 2 1
6 6 O 1.21280 * 119.99781 * 0.02562 * 5 4 2
7 7 N 1.34780 * 119.99795 * 179.97438 * 5 4 2
8 8 C 1.46490 * 120.00111 * 0.02562 * 7 5 4
9 9 C 1.46497 * 119.99566 * 180.02562 * 7 5 4
10 10 H 1.09008 * 109.47432 * 0.02562 * 9 7 5
11 11 C 1.52999 * 109.47308 * 240.00239 * 9 7 5
12 12 C 1.53004 * 109.46754 * 120.00345 * 9 7 5
13 13 N 1.46493 * 109.47171 * 304.99712 * 12 9 7
14 14 C 1.34781 * 120.00065 * 180.02562 * 13 12 9
15 15 O 1.21280 * 119.99616 * 359.97438 * 14 13 12
16 16 C 1.50696 * 120.00239 * 180.02562 * 14 13 12
17 17 S 1.81000 * 109.47265 * 179.97438 * 16 14 13
18 18 C 1.76204 * 100.00128 * 179.97438 * 17 16 14
19 19 H 1.08005 * 119.99746 * 0.02562 * 18 17 16
20 20 C 1.38796 * 119.99962 * 180.02562 * 18 17 16
21 21 N 1.31628 * 119.99918 * 359.97438 * 20 18 17
22 22 Si 1.86804 * 119.99884 * 180.02562 * 20 18 17
23 23 H 1.48504 * 109.46747 * 359.97438 * 22 20 18
24 24 H 1.48500 * 109.47213 * 119.99738 * 22 20 18
25 25 H 1.48498 * 109.46936 * 239.99827 * 22 20 18
26 26 C 1.52997 * 109.47024 * 119.99412 * 2 1 3
27 27 C 1.52997 * 117.50274 * 248.62406 * 26 2 1
28 28 C 1.52999 * 60.00241 * 252.51028 * 27 26 2
29 29 H 1.09000 * 109.47403 * 300.00135 * 1 2 3
30 30 H 1.09001 * 109.46917 * 60.00677 * 1 2 3
31 31 H 1.09004 * 109.46741 * 180.02562 * 1 2 3
32 32 H 1.09002 * 109.47153 * 304.99767 * 4 2 1
33 33 H 1.09001 * 109.46832 * 184.99958 * 4 2 1
34 34 H 1.08995 * 109.47620 * 89.99771 * 8 7 5
35 35 H 1.09006 * 109.47028 * 209.99878 * 8 7 5
36 36 H 1.09002 * 109.47109 * 329.99455 * 8 7 5
37 37 H 1.08995 * 109.47160 * 60.00167 * 11 9 7
38 38 H 1.09004 * 109.47313 * 180.02562 * 11 9 7
39 39 H 1.09008 * 109.47080 * 300.00468 * 11 9 7
40 40 H 1.09001 * 109.47035 * 65.00401 * 12 9 7
41 41 H 1.09007 * 109.46806 * 184.99578 * 12 9 7
42 42 H 0.96999 * 120.00354 * 0.02562 * 13 12 9
43 43 H 1.09003 * 109.46890 * 300.00407 * 16 14 13
44 44 H 1.09002 * 109.47239 * 59.99397 * 16 14 13
45 45 H 0.97001 * 119.99505 * 179.97438 * 21 20 18
46 46 H 1.09004 * 115.54795 * 34.33588 * 26 2 1
47 47 H 1.09004 * 117.49960 * 0.02562 * 27 26 2
48 48 H 1.09000 * 117.49945 * 145.01956 * 27 26 2
49 49 H 1.08994 * 117.49974 * 252.50732 * 28 27 26
50 50 H 1.09002 * 117.51615 * 107.47832 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0401 -0.7213 -1.2492
5 6 1.6414 0.0570 -2.4766
6 8 1.0117 1.0873 -2.3633
7 7 1.9854 -0.3915 -3.7001
8 6 2.7464 -1.6358 -3.8369
9 6 1.5983 0.3653 -4.8932
10 1 1.0430 1.2547 -4.5950
11 6 0.7187 -0.5093 -5.7889
12 6 2.8536 0.7824 -5.6621
13 7 3.7512 1.5189 -4.7688
14 6 4.9268 1.9882 -5.2318
15 8 5.2417 1.8002 -6.3879
16 6 5.8504 2.7454 -4.3129
17 16 7.3354 3.2389 -5.2225
18 6 8.2108 4.0805 -3.9457
19 1 7.7819 4.1579 -2.9575
20 6 9.4514 4.6440 -4.2100
21 7 9.9742 4.5492 -5.4143
22 14 10.3797 5.5356 -2.8563
23 1 9.5820 5.5019 -1.6041
24 1 11.6865 4.8677 -2.6294
25 1 10.6082 6.9465 -3.2592
26 6 2.0400 -0.7211 1.2493
27 6 2.7418 0.1228 2.3152
28 6 3.5550 -0.8279 1.4344
29 1 -0.3634 0.5138 0.8900
30 1 -0.3633 0.5137 -0.8901
31 1 -0.3633 -1.0277 0.0005
32 1 1.6055 -1.7198 -1.2951
33 1 3.1264 -0.7994 -1.2055
34 1 2.0572 -2.4757 -3.9229
35 1 3.3696 -1.5842 -4.7297
36 1 3.3789 -1.7731 -2.9598
37 1 -0.1756 -0.8064 -5.2411
38 1 0.4310 0.0537 -6.6768
39 1 1.2743 -1.3985 -6.0870
40 1 3.3622 -0.1060 -6.0366
41 1 2.5714 1.4198 -6.5001
42 1 3.4995 1.6690 -3.8442
43 1 5.3417 3.6334 -3.9376
44 1 6.1329 2.1075 -3.4754
45 1 10.8410 4.9433 -5.5991
46 1 1.4310 -1.5584 1.5903
47 1 2.8399 1.1919 2.1266
48 1 2.5946 -0.1591 3.3577
49 1 3.9428 -1.7352 1.8975
50 1 4.1884 -0.3847 0.6660
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001718139302.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:41:06
Heat of formation + Delta-G solvation = -61.866509 kcal
Electronic energy + Delta-G solvation = -28028.255800 eV
Core-core repulsion = 24182.219106 eV
Total energy + Delta-G solvation = -3846.036694 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-40.68469 -39.14726 -38.22090 -36.77489 -34.18622 -33.43277 -32.42612 -31.98711
-29.41321 -28.14686 -27.21508 -25.97333 -25.36360 -23.95799 -22.64520 -21.76367
-20.33569 -20.08720 -19.19596 -17.85110 -17.61048 -16.71050 -16.35544 -16.08851
-15.86543 -15.58983 -15.05429 -14.80197 -14.71773 -14.29011 -14.02459 -13.91461
-13.47517 -13.36186 -13.17572 -13.11926 -12.93597 -12.79771 -12.65223 -12.49052
-12.17430 -12.13662 -11.84855 -11.76700 -11.58946 -11.49161 -11.23044 -11.07991
-11.06559 -11.01413 -10.75226 -10.48905 -10.26170 -9.86546 -9.80445 -9.42361
-9.07528 -8.99498 -8.88283 -8.23125 -6.49645 -6.21582 -3.91906 2.35632
2.60403 3.04701 3.10231 3.21893 3.28752 3.33890 3.49271 3.72933
4.13897 4.20749 4.39797 4.48934 4.57588 4.64925 4.72968 4.75889
4.84303 4.91510 4.94815 5.10766 5.11357 5.13762 5.16259 5.22972
5.29372 5.33678 5.35686 5.39402 5.42208 5.52141 5.56108 5.61736
5.67722 5.73387 5.79350 5.82915 5.85856 5.87534 5.89935 6.08381
6.14008 6.15176 6.24278 6.61169 7.04736 7.60411 7.70224 7.90243
8.35955 8.60981 9.24053 10.85917
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.008982 B = 0.002920 C = 0.002312
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3116.657937 B = 9586.601731 C =12105.570685
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.046 4.046
3 H 0.080 0.920
4 C -0.134 4.134
5 C 0.513 3.487
6 O -0.535 6.535
7 N -0.611 5.611
8 C 0.074 3.926
9 C 0.122 3.878
10 H 0.109 0.891
11 C -0.156 4.156
12 C 0.112 3.888
13 N -0.734 5.734
14 C 0.532 3.468
15 O -0.519 6.519
16 C -0.153 4.153
17 S -0.060 6.060
18 C -0.535 4.535
19 H 0.073 0.927
20 C 0.073 3.927
21 N -0.868 5.868
22 Si 0.918 3.082
23 H -0.272 1.272
24 H -0.280 1.280
25 H -0.280 1.280
26 C -0.150 4.150
27 C -0.178 4.178
28 C -0.182 4.182
29 H 0.053 0.947
30 H 0.075 0.925
31 H 0.046 0.954
32 H 0.093 0.907
33 H 0.096 0.904
34 H 0.057 0.943
35 H 0.076 0.924
36 H 0.074 0.926
37 H 0.063 0.937
38 H 0.072 0.928
39 H 0.062 0.938
40 H 0.069 0.931
41 H 0.077 0.923
42 H 0.397 0.603
43 H 0.089 0.911
44 H 0.087 0.913
45 H 0.268 0.732
46 H 0.103 0.897
47 H 0.095 0.905
48 H 0.092 0.908
49 H 0.093 0.907
50 H 0.096 0.904
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.689 -15.972 10.010 27.988
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.064 4.064
3 H 0.098 0.902
4 C -0.174 4.174
5 C 0.302 3.698
6 O -0.412 6.412
7 N -0.346 5.346
8 C -0.069 4.069
9 C 0.019 3.981
10 H 0.127 0.873
11 C -0.215 4.215
12 C -0.013 4.013
13 N -0.389 5.389
14 C 0.318 3.682
15 O -0.393 6.393
16 C -0.303 4.303
17 S 0.167 5.833
18 C -0.683 4.683
19 H 0.091 0.909
20 C -0.136 4.136
21 N -0.503 5.503
22 Si 0.745 3.255
23 H -0.196 1.196
24 H -0.206 1.206
25 H -0.205 1.205
26 C -0.168 4.168
27 C -0.215 4.215
28 C -0.219 4.219
29 H 0.072 0.928
30 H 0.094 0.906
31 H 0.065 0.935
32 H 0.111 0.889
33 H 0.114 0.886
34 H 0.076 0.924
35 H 0.095 0.905
36 H 0.093 0.907
37 H 0.082 0.918
38 H 0.091 0.909
39 H 0.081 0.919
40 H 0.087 0.913
41 H 0.095 0.905
42 H 0.231 0.769
43 H 0.107 0.893
44 H 0.106 0.894
45 H 0.078 0.922
46 H 0.121 0.879
47 H 0.114 0.886
48 H 0.110 0.890
49 H 0.112 0.888
50 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges -20.347 -15.704 8.003 26.920
hybrid contribution 0.261 0.664 2.614 2.710
sum -20.086 -15.039 10.617 27.246
Atomic orbital electron populations
1.21907 0.94332 1.01282 1.03074 1.20480 0.96451 0.99015 0.90493
0.90188 1.21781 1.03103 1.00197 0.92279 1.20833 0.78871 0.85616
0.84479 1.90685 1.39860 1.24517 1.86115 1.47966 1.55727 1.25064
1.05808 1.21826 0.95908 0.85369 1.03806 1.21388 0.95265 0.96302
0.85158 0.87347 1.22037 0.99586 1.00180 0.99668 1.21645 0.89725
0.96813 0.93160 1.45921 1.19857 1.58560 1.14563 1.20298 0.80919
0.78431 0.88534 1.90698 1.73917 1.56567 1.18126 1.23522 1.02234
1.02084 1.02499 1.85366 1.10956 1.70869 1.16100 1.22913 1.06354
1.40930 0.98086 0.90905 1.24990 0.96454 0.95820 0.96317 1.70029
1.17639 1.42831 1.19810 0.86120 0.79333 0.79130 0.80944 1.19603
1.20554 1.20546 1.22382 0.94782 1.01963 0.97708 1.23007 1.04440
0.97867 0.96166 1.22977 0.93706 1.01827 1.03385 0.92799 0.90630
0.93455 0.88884 0.88618 0.92414 0.90480 0.90707 0.91843 0.90875
0.91901 0.91291 0.90450 0.76877 0.89296 0.89433 0.92249 0.87895
0.88649 0.88968 0.88847 0.88593
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.25 8.92 37.16 0.33 -0.92 16
2 C -0.05 -0.37 2.19 -90.62 -0.20 -0.57 16
3 H 0.08 0.81 7.71 -51.93 -0.40 0.41 16
4 C -0.13 -0.97 3.64 -27.88 -0.10 -1.07 16
5 C 0.51 4.94 7.09 -10.98 -0.08 4.86 16
6 O -0.53 -6.86 13.29 5.56 0.07 -6.78 16
7 N -0.61 -5.09 2.24 -173.94 -0.39 -5.48 16
8 C 0.07 0.46 9.30 59.84 0.56 1.01 16
9 C 0.12 1.10 2.80 -67.93 -0.19 0.91 16
10 H 0.11 1.16 6.90 -51.92 -0.36 0.80 16
11 C -0.16 -1.06 9.19 37.16 0.34 -0.71 16
12 C 0.11 1.27 4.92 -4.04 -0.02 1.25 16
13 N -0.73 -10.30 5.39 -60.29 -0.32 -10.63 16
14 C 0.53 10.10 7.85 -10.99 -0.09 10.01 16
15 O -0.52 -11.77 15.86 5.56 0.09 -11.68 16
16 C -0.15 -3.17 6.16 36.00 0.22 -2.94 16
17 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16
18 C -0.53 -15.37 9.50 30.94 0.29 -15.07 16
19 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16
20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16
21 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16
22 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16
23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16
24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16
25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
26 C -0.15 -1.07 5.15 -90.62 -0.47 -1.54 16
27 C -0.18 -1.33 10.18 -26.73 -0.27 -1.61 16
28 C -0.18 -1.31 9.67 -26.73 -0.26 -1.57 16
29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16
30 H 0.07 0.79 5.95 -51.93 -0.31 0.48 16
31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16
32 H 0.09 0.53 8.11 -51.93 -0.42 0.11 16
33 H 0.10 0.63 6.38 -51.93 -0.33 0.30 16
34 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16
35 H 0.08 0.53 6.53 -51.93 -0.34 0.19 16
36 H 0.07 0.40 6.44 -51.93 -0.33 0.06 16
37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16
39 H 0.06 0.38 7.67 -51.92 -0.40 -0.02 16
40 H 0.07 0.79 6.88 -51.93 -0.36 0.43 16
41 H 0.08 0.93 8.14 -51.92 -0.42 0.51 16
42 H 0.40 5.14 7.87 -40.82 -0.32 4.82 16
43 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16
44 H 0.09 1.68 8.14 -51.91 -0.42 1.25 16
45 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16
46 H 0.10 0.66 8.11 -51.93 -0.42 0.24 16
47 H 0.10 0.77 8.05 -51.93 -0.42 0.35 16
48 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16
49 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16
50 H 0.10 0.74 7.58 -51.93 -0.39 0.34 16
LS Contribution 415.23 15.07 6.26 6.26
Total: -1.00 -35.07 415.23 -9.39 -44.47
By element:
Atomic # 1 Polarization: 11.22 SS G_CDS: -8.58 Total: 2.64 kcal
Atomic # 6 Polarization: -5.93 SS G_CDS: -0.02 Total: -5.95 kcal
Atomic # 7 Polarization: -41.65 SS G_CDS: 0.02 Total: -41.63 kcal
Atomic # 8 Polarization: -18.62 SS G_CDS: 0.16 Total: -18.46 kcal
Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal
Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal
Total LS contribution 6.26 Total: 6.26 kcal
Total: -35.07 -9.39 -44.47 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001718139302.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -17.400 kcal
(2) G-P(sol) polarization free energy of solvation -35.071 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.472 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.395 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.466 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.867 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds