Wall clock time and date at job start Sat Apr 11 2020 06:41:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.09004 * 109.46741 * 2 1
4 4 C 1.52997 * 109.47236 * 239.99889 * 2 1 3
5 5 C 1.50701 * 109.47212 * 64.99766 * 4 2 1
6 6 O 1.21280 * 119.99781 * 0.02562 * 5 4 2
7 7 N 1.34780 * 119.99795 * 179.97438 * 5 4 2
8 8 C 1.46490 * 120.00111 * 0.02562 * 7 5 4
9 9 C 1.46497 * 119.99566 * 180.02562 * 7 5 4
10 10 H 1.09008 * 109.47432 * 0.02562 * 9 7 5
11 11 C 1.52999 * 109.47308 * 240.00239 * 9 7 5
12 12 C 1.53004 * 109.46754 * 120.00345 * 9 7 5
13 13 N 1.46493 * 109.47171 * 304.99712 * 12 9 7
14 14 C 1.34781 * 120.00065 * 180.02562 * 13 12 9
15 15 O 1.21280 * 119.99616 * 359.97438 * 14 13 12
16 16 C 1.50696 * 120.00239 * 180.02562 * 14 13 12
17 17 S 1.81000 * 109.47265 * 179.97438 * 16 14 13
18 18 C 1.76204 * 100.00128 * 179.97438 * 17 16 14
19 19 H 1.08005 * 119.99746 * 0.02562 * 18 17 16
20 20 C 1.38796 * 119.99962 * 180.02562 * 18 17 16
21 21 N 1.31628 * 119.99918 * 359.97438 * 20 18 17
22 22 Si 1.86804 * 119.99884 * 180.02562 * 20 18 17
23 23 H 1.48504 * 109.46747 * 359.97438 * 22 20 18
24 24 H 1.48500 * 109.47213 * 119.99738 * 22 20 18
25 25 H 1.48498 * 109.46936 * 239.99827 * 22 20 18
26 26 C 1.52997 * 109.47024 * 119.99412 * 2 1 3
27 27 C 1.52997 * 117.50274 * 248.62406 * 26 2 1
28 28 C 1.52999 * 60.00241 * 252.51028 * 27 26 2
29 29 H 1.09000 * 109.47403 * 300.00135 * 1 2 3
30 30 H 1.09001 * 109.46917 * 60.00677 * 1 2 3
31 31 H 1.09004 * 109.46741 * 180.02562 * 1 2 3
32 32 H 1.09002 * 109.47153 * 304.99767 * 4 2 1
33 33 H 1.09001 * 109.46832 * 184.99958 * 4 2 1
34 34 H 1.08995 * 109.47620 * 89.99771 * 8 7 5
35 35 H 1.09006 * 109.47028 * 209.99878 * 8 7 5
36 36 H 1.09002 * 109.47109 * 329.99455 * 8 7 5
37 37 H 1.08995 * 109.47160 * 60.00167 * 11 9 7
38 38 H 1.09004 * 109.47313 * 180.02562 * 11 9 7
39 39 H 1.09008 * 109.47080 * 300.00468 * 11 9 7
40 40 H 1.09001 * 109.47035 * 65.00401 * 12 9 7
41 41 H 1.09007 * 109.46806 * 184.99578 * 12 9 7
42 42 H 0.96999 * 120.00354 * 0.02562 * 13 12 9
43 43 H 1.09003 * 109.46890 * 300.00407 * 16 14 13
44 44 H 1.09002 * 109.47239 * 59.99397 * 16 14 13
45 45 H 0.97001 * 119.99505 * 179.97438 * 21 20 18
46 46 H 1.09004 * 115.54795 * 34.33588 * 26 2 1
47 47 H 1.09004 * 117.49960 * 0.02562 * 27 26 2
48 48 H 1.09000 * 117.49945 * 145.01956 * 27 26 2
49 49 H 1.08994 * 117.49974 * 252.50732 * 28 27 26
50 50 H 1.09002 * 117.51615 * 107.47832 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0401 -0.7213 -1.2492
5 6 1.6414 0.0570 -2.4766
6 8 1.0117 1.0873 -2.3633
7 7 1.9854 -0.3915 -3.7001
8 6 2.7464 -1.6358 -3.8369
9 6 1.5983 0.3653 -4.8932
10 1 1.0430 1.2547 -4.5950
11 6 0.7187 -0.5093 -5.7889
12 6 2.8536 0.7824 -5.6621
13 7 3.7512 1.5189 -4.7688
14 6 4.9268 1.9882 -5.2318
15 8 5.2417 1.8002 -6.3879
16 6 5.8504 2.7454 -4.3129
17 16 7.3354 3.2389 -5.2225
18 6 8.2108 4.0805 -3.9457
19 1 7.7819 4.1579 -2.9575
20 6 9.4514 4.6440 -4.2100
21 7 9.9742 4.5492 -5.4143
22 14 10.3797 5.5356 -2.8563
23 1 9.5820 5.5019 -1.6041
24 1 11.6865 4.8677 -2.6294
25 1 10.6082 6.9465 -3.2592
26 6 2.0400 -0.7211 1.2493
27 6 2.7418 0.1228 2.3152
28 6 3.5550 -0.8279 1.4344
29 1 -0.3634 0.5138 0.8900
30 1 -0.3633 0.5137 -0.8901
31 1 -0.3633 -1.0277 0.0005
32 1 1.6055 -1.7198 -1.2951
33 1 3.1264 -0.7994 -1.2055
34 1 2.0572 -2.4757 -3.9229
35 1 3.3696 -1.5842 -4.7297
36 1 3.3789 -1.7731 -2.9598
37 1 -0.1756 -0.8064 -5.2411
38 1 0.4310 0.0537 -6.6768
39 1 1.2743 -1.3985 -6.0870
40 1 3.3622 -0.1060 -6.0366
41 1 2.5714 1.4198 -6.5001
42 1 3.4995 1.6690 -3.8442
43 1 5.3417 3.6334 -3.9376
44 1 6.1329 2.1075 -3.4754
45 1 10.8410 4.9433 -5.5991
46 1 1.4310 -1.5584 1.5903
47 1 2.8399 1.1919 2.1266
48 1 2.5946 -0.1591 3.3577
49 1 3.9428 -1.7352 1.8975
50 1 4.1884 -0.3847 0.6660
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001718139302.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:41:05
Heat of formation + Delta-G solvation = -83.563194 kcal
Electronic energy + Delta-G solvation = -28029.196639 eV
Core-core repulsion = 24182.219106 eV
Total energy + Delta-G solvation = -3846.977533 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 1.31 seconds
Orbital eigenvalues (eV)
-41.48234 -40.50202 -38.90917 -37.63653 -35.30614 -34.60290 -34.14595 -32.85547
-30.91051 -28.77427 -27.78069 -27.75866 -26.79452 -24.61724 -23.21628 -22.48620
-21.77933 -20.75610 -20.00989 -19.71219 -18.33045 -17.91529 -17.60503 -17.00724
-16.90003 -16.76004 -16.41484 -16.24593 -15.88188 -15.40142 -14.96316 -14.92375
-14.60588 -14.51128 -14.06343 -14.02789 -13.93708 -13.78658 -13.48261 -13.30096
-13.18114 -13.05649 -12.92316 -12.89028 -12.78304 -12.58832 -12.41610 -12.20888
-12.10551 -11.96896 -11.73176 -11.71965 -11.17380 -11.07747 -11.02705 -10.85034
-10.61254 -10.31262 -10.17772 -9.69126 -8.68759 -8.36649 -6.14762 1.24331
1.40159 1.44692 1.55343 1.56686 1.63272 1.93147 2.24105 2.27521
2.92573 2.97568 3.28930 3.48728 3.66617 3.82265 3.89917 3.98143
4.01887 4.11283 4.18168 4.22096 4.24303 4.27239 4.33377 4.44547
4.51273 4.55790 4.60016 4.69730 4.73425 4.75374 4.77247 4.84352
4.90370 4.96427 5.02900 5.05571 5.19074 5.22046 5.23182 5.29831
5.35038 5.40271 5.42557 5.50211 5.59118 6.18219 6.35301 6.38825
7.04871 7.14972 7.18712 8.72823
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.008982 B = 0.002920 C = 0.002312
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3116.657937 B = 9586.601731 C =12105.570685
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.044 4.044
3 H 0.053 0.947
4 C -0.127 4.127
5 C 0.508 3.492
6 O -0.573 6.573
7 N -0.609 5.609
8 C 0.068 3.932
9 C 0.131 3.869
10 H 0.091 0.909
11 C -0.149 4.149
12 C 0.111 3.889
13 N -0.711 5.711
14 C 0.536 3.464
15 O -0.560 6.560
16 C -0.131 4.131
17 S -0.142 6.142
18 C -0.548 4.548
19 H 0.080 0.920
20 C 0.015 3.985
21 N -0.910 5.910
22 Si 0.998 3.002
23 H -0.259 1.259
24 H -0.271 1.271
25 H -0.274 1.274
26 C -0.142 4.142
27 C -0.189 4.189
28 C -0.180 4.180
29 H 0.051 0.949
30 H 0.053 0.947
31 H 0.063 0.937
32 H 0.117 0.883
33 H 0.106 0.894
34 H 0.080 0.920
35 H 0.070 0.930
36 H 0.086 0.914
37 H 0.067 0.933
38 H 0.078 0.922
39 H 0.075 0.925
40 H 0.075 0.925
41 H 0.072 0.928
42 H 0.405 0.595
43 H 0.101 0.899
44 H 0.107 0.893
45 H 0.272 0.728
46 H 0.117 0.883
47 H 0.083 0.917
48 H 0.102 0.898
49 H 0.105 0.895
50 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.418 -17.632 11.913 30.192
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.063 4.063
3 H 0.072 0.928
4 C -0.167 4.167
5 C 0.298 3.702
6 O -0.453 6.453
7 N -0.343 5.343
8 C -0.074 4.074
9 C 0.027 3.973
10 H 0.109 0.891
11 C -0.207 4.207
12 C -0.014 4.014
13 N -0.364 5.364
14 C 0.322 3.678
15 O -0.438 6.438
16 C -0.282 4.282
17 S 0.085 5.915
18 C -0.696 4.696
19 H 0.098 0.902
20 C -0.190 4.190
21 N -0.546 5.546
22 Si 0.820 3.180
23 H -0.183 1.183
24 H -0.196 1.196
25 H -0.199 1.199
26 C -0.160 4.160
27 C -0.226 4.226
28 C -0.217 4.217
29 H 0.070 0.930
30 H 0.072 0.928
31 H 0.082 0.918
32 H 0.135 0.865
33 H 0.124 0.876
34 H 0.099 0.901
35 H 0.089 0.911
36 H 0.105 0.895
37 H 0.086 0.914
38 H 0.097 0.903
39 H 0.094 0.906
40 H 0.093 0.907
41 H 0.090 0.910
42 H 0.241 0.759
43 H 0.119 0.881
44 H 0.125 0.875
45 H 0.081 0.919
46 H 0.135 0.865
47 H 0.101 0.899
48 H 0.120 0.880
49 H 0.124 0.876
50 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges -21.113 -17.401 9.922 29.103
hybrid contribution 0.369 1.135 2.014 2.341
sum -20.744 -16.266 11.936 28.937
Atomic orbital electron populations
1.21842 0.94516 1.01926 1.01854 1.20414 0.96266 0.97954 0.91702
0.92806 1.21787 1.03731 1.00698 0.90459 1.21272 0.78296 0.85262
0.85321 1.90679 1.41672 1.26258 1.86653 1.48045 1.55484 1.25530
1.05197 1.22032 0.96359 0.84881 1.04116 1.21251 0.93972 0.96505
0.85613 0.89094 1.21985 0.99237 1.00160 0.99320 1.21853 0.90103
0.96486 0.92917 1.45719 1.18375 1.57103 1.15231 1.19972 0.81880
0.78411 0.87549 1.90688 1.75071 1.58452 1.19593 1.23365 0.99419
1.03155 1.02300 1.85490 1.15242 1.71607 1.19115 1.23227 1.06943
1.41203 0.98228 0.90210 1.26107 0.97386 0.96470 0.99014 1.70179
1.18264 1.43928 1.22244 0.84918 0.77827 0.77615 0.77662 1.18257
1.19639 1.19894 1.22344 0.94919 1.01928 0.96851 1.23060 1.05231
0.97408 0.96939 1.23014 0.93593 1.02019 1.03047 0.93028 0.92827
0.91799 0.86458 0.87638 0.90106 0.91084 0.89507 0.91440 0.90317
0.90643 0.90662 0.90954 0.75926 0.88116 0.87504 0.91911 0.86492
0.89877 0.88007 0.87632 0.89262
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.29 8.92 71.98 0.64 -1.65 16
2 C -0.04 -0.68 2.19 -10.79 -0.02 -0.70 16
3 H 0.05 1.10 7.71 -2.39 -0.02 1.09 16
4 C -0.13 -1.57 3.64 29.85 0.11 -1.47 16
5 C 0.51 9.10 7.09 87.66 0.62 9.72 16
6 O -0.57 -14.64 13.29 -3.03 -0.04 -14.68 16
7 N -0.61 -8.97 2.24 -822.60 -1.85 -10.81 16
8 C 0.07 0.64 9.30 127.77 1.19 1.83 16
9 C 0.13 2.18 2.80 44.99 0.13 2.30 16
10 H 0.09 1.90 6.90 -2.38 -0.02 1.88 16
11 C -0.15 -1.70 9.19 71.98 0.66 -1.04 16
12 C 0.11 2.41 4.92 86.38 0.42 2.83 16
13 N -0.71 -19.32 5.39 -463.06 -2.49 -21.81 16
14 C 0.54 20.24 7.85 87.65 0.69 20.93 16
15 O -0.56 -25.77 15.86 -3.03 -0.05 -25.82 16
16 C -0.13 -5.40 6.16 71.23 0.44 -4.97 16
17 S -0.14 -7.94 20.57 -56.49 -1.16 -9.10 16
18 C -0.55 -31.70 9.50 67.95 0.65 -31.06 16
19 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16
20 C 0.02 0.87 5.49 84.86 0.47 1.33 16
21 N -0.91 -55.96 13.22 21.65 0.29 -55.67 16
22 Si 1.00 43.93 29.55 68.60 2.03 45.96 16
23 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16
24 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16
25 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16
26 C -0.14 -1.76 5.15 -10.79 -0.06 -1.81 16
27 C -0.19 -2.63 10.18 30.59 0.31 -2.32 16
28 C -0.18 -2.25 9.67 30.60 0.30 -1.95 16
29 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16
30 H 0.05 1.11 5.95 -2.39 -0.01 1.10 16
31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16
32 H 0.12 0.91 8.11 -2.39 -0.02 0.89 16
33 H 0.11 1.13 6.38 -2.39 -0.02 1.11 16
34 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16
35 H 0.07 0.79 6.53 -2.38 -0.02 0.78 16
36 H 0.09 0.63 6.44 -2.39 -0.02 0.62 16
37 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16
38 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16
39 H 0.07 0.70 7.67 -2.38 -0.02 0.68 16
40 H 0.08 1.61 6.88 -2.39 -0.02 1.59 16
41 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16
42 H 0.41 10.01 7.87 -92.71 -0.73 9.28 16
43 H 0.10 3.91 8.14 -2.39 -0.02 3.89 16
44 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16
45 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16
46 H 0.12 1.16 8.11 -2.39 -0.02 1.14 16
47 H 0.08 1.34 8.05 -2.38 -0.02 1.33 16
48 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16
49 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16
50 H 0.09 1.24 7.58 -2.39 -0.02 1.22 16
Total: -1.00 -78.24 415.23 3.46 -74.79
By element:
Atomic # 1 Polarization: 24.98 SS G_CDS: 0.20 Total: 25.18 kcal
Atomic # 6 Polarization: -14.56 SS G_CDS: 6.54 Total: -8.02 kcal
Atomic # 7 Polarization: -84.25 SS G_CDS: -4.05 Total: -88.30 kcal
Atomic # 8 Polarization: -40.41 SS G_CDS: -0.09 Total: -40.50 kcal
Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal
Atomic # 16 Polarization: -7.94 SS G_CDS: -1.16 Total: -9.10 kcal
Total: -78.24 3.46 -74.79 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001718139302.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -8.778 kcal
(2) G-P(sol) polarization free energy of solvation -78.245 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.023 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.459 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.785 kcal
(6) G-S(sol) free energy of system = (1) + (5) -83.563 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.31 seconds