Wall clock time and date at job start Sat Apr 11 2020 06:39:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09002 * 109.47007 * 2 1
4 4 C 1.52998 * 109.47089 * 240.00437 * 2 1 3
5 5 N 1.46497 * 109.47307 * 185.00008 * 4 2 1
6 6 C 1.34772 * 120.00155 * 180.02562 * 5 4 2
7 7 O 1.21282 * 120.00122 * 359.97438 * 6 5 4
8 8 C 1.50701 * 120.00002 * 179.97438 * 6 5 4
9 9 S 1.81005 * 109.47036 * 179.97438 * 8 6 5
10 10 C 1.76194 * 99.99972 * 179.97438 * 9 8 6
11 11 H 1.08003 * 120.00071 * 0.02562 * 10 9 8
12 12 C 1.38801 * 119.99993 * 180.02562 * 10 9 8
13 13 N 1.31629 * 120.00058 * 0.02562 * 12 10 9
14 14 Si 1.86796 * 120.00050 * 180.02562 * 12 10 9
15 15 H 1.48499 * 109.47480 * 89.99636 * 14 12 10
16 16 H 1.48499 * 109.47176 * 210.00139 * 14 12 10
17 17 H 1.48507 * 109.46980 * 329.99876 * 14 12 10
18 18 N 1.46498 * 109.47262 * 119.99919 * 2 1 3
19 19 C 1.34779 * 120.00043 * 274.99859 * 18 2 1
20 20 O 1.21283 * 120.00001 * 0.02562 * 19 18 2
21 21 C 1.50699 * 119.99640 * 180.02562 * 19 18 2
22 22 H 1.09001 * 110.54065 * 57.38927 * 21 19 18
23 23 C 1.54893 * 110.48463 * 294.77215 * 21 19 18
24 24 C 1.54887 * 102.74533 * 203.38295 * 23 21 19
25 25 C 1.54266 * 104.19888 * 37.94403 * 24 23 21
26 26 C 1.53001 * 110.02912 * 95.67501 * 25 24 23
27 27 C 1.53001 * 110.03274 * 217.05174 * 25 24 23
28 28 C 1.53872 * 106.59640 * 336.38805 * 25 24 23
29 29 H 1.08992 * 109.47573 * 59.99638 * 1 2 3
30 30 H 1.08996 * 109.46921 * 180.02562 * 1 2 3
31 31 H 1.09005 * 109.46751 * 299.99916 * 1 2 3
32 32 H 1.09003 * 109.46888 * 304.99636 * 4 2 1
33 33 H 1.08997 * 109.47080 * 64.99064 * 4 2 1
34 34 H 0.97002 * 120.00023 * 359.97438 * 5 4 2
35 35 H 1.08994 * 109.47231 * 299.99509 * 8 6 5
36 36 H 1.08998 * 109.47059 * 60.00055 * 8 6 5
37 37 H 0.96997 * 119.99993 * 179.97438 * 13 12 10
38 38 H 0.96993 * 119.99553 * 95.00242 * 18 2 1
39 39 H 1.09001 * 110.75228 * 85.07031 * 23 21 19
40 40 H 1.09000 * 110.75571 * 321.69664 * 23 21 19
41 41 H 1.09001 * 110.48816 * 279.26329 * 24 23 21
42 42 H 1.09004 * 110.48531 * 156.62545 * 24 23 21
43 43 H 1.08994 * 109.47374 * 61.45504 * 26 25 24
44 44 H 1.08999 * 109.46732 * 181.45527 * 26 25 24
45 45 H 1.08998 * 109.46993 * 301.45268 * 26 25 24
46 46 H 1.09004 * 109.46352 * 58.54870 * 27 25 24
47 47 H 1.08999 * 109.47066 * 178.54378 * 27 25 24
48 48 H 1.08993 * 109.47695 * 298.54960 * 27 25 24
49 49 H 1.09002 * 110.03208 * 119.28196 * 28 25 24
50 50 H 1.08996 * 110.03362 * 240.71095 * 28 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7211 -1.2493
5 7 3.5000 -0.8263 -1.1907
6 6 4.1730 -1.4281 -2.1913
7 8 3.5699 -1.8830 -3.1401
8 6 5.6750 -1.5357 -2.1312
9 16 6.2783 -2.3890 -3.6091
10 6 8.0101 -2.3749 -3.2851
11 1 8.3864 -1.9218 -2.3798
12 6 8.8908 -2.9459 -4.1933
13 7 8.4322 -3.4976 -5.2969
14 14 10.7268 -2.9315 -3.8494
15 1 11.0991 -4.1562 -3.0966
16 1 11.4707 -2.8948 -5.1341
17 1 11.0701 -1.7319 -3.0441
18 7 2.0184 -0.6906 1.1962
19 6 2.1471 -0.0182 2.3571
20 8 1.8583 1.1585 2.4117
21 6 2.6501 -0.7285 3.5874
22 1 3.6304 -1.1674 3.4017
23 6 1.6438 -1.8183 4.0335
24 6 1.9716 -1.9910 5.5374
25 6 2.2799 -0.5601 6.0243
26 6 1.0275 0.0640 6.6432
27 6 3.4131 -0.5888 7.0518
28 6 2.7112 0.2427 4.7844
29 1 -0.3634 0.5138 -0.8899
30 1 -0.3633 -1.0276 0.0005
31 1 -0.3633 0.5139 0.8900
32 1 1.6054 -1.7197 -1.2952
33 1 1.7515 -0.1582 -2.1369
34 1 3.9824 -0.4621 -0.4320
35 1 6.1093 -0.5371 -2.0852
36 1 5.9637 -2.0988 -1.2438
37 1 9.0477 -3.8963 -5.9318
38 1 2.2491 -1.6317 1.1525
39 1 1.8160 -2.7481 3.4913
40 1 0.6180 -1.4754 3.8986
41 1 2.8424 -2.6339 5.6667
42 1 1.1128 -2.3988 6.0706
43 1 0.7160 -0.5254 7.5055
44 1 1.2484 1.0832 6.9604
45 1 0.2261 0.0790 5.9046
46 1 4.2998 -1.0358 6.6022
47 1 3.6408 0.4286 7.3701
48 1 3.1063 -1.1795 7.9148
49 1 2.0284 1.0769 4.6236
50 1 3.7285 0.6120 4.9140
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001720897201.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:39:55
Heat of formation + Delta-G solvation = -108.540205 kcal
Electronic energy + Delta-G solvation = -27437.133890 eV
Core-core repulsion = 23589.073272 eV
Total energy + Delta-G solvation = -3848.060617 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-40.72703 -39.36598 -38.55863 -36.44581 -33.76187 -32.93548 -32.44907 -31.14314
-29.45525 -29.23092 -27.67276 -26.09497 -25.48018 -25.21511 -22.79378 -21.33169
-20.40233 -20.27557 -19.04833 -17.98881 -17.59546 -16.81922 -16.29519 -15.95413
-15.76722 -15.13716 -15.01290 -14.82575 -14.81003 -14.23730 -14.09160 -13.90024
-13.68288 -13.46874 -13.34951 -13.09742 -12.93770 -12.87648 -12.58434 -12.49351
-12.26245 -12.01929 -11.88383 -11.83901 -11.50803 -11.29726 -11.11551 -11.08087
-11.04551 -10.92761 -10.89026 -10.82257 -10.77957 -9.99042 -9.84234 -9.52270
-9.39228 -9.09492 -8.98176 -8.26665 -6.52690 -6.23798 -3.94581 2.36318
2.79661 3.00059 3.04950 3.20832 3.26494 3.30546 3.67253 4.05098
4.08405 4.18367 4.28524 4.38879 4.66066 4.79811 4.81010 4.84037
4.95669 4.97125 5.07603 5.11064 5.11495 5.13495 5.18741 5.29604
5.32361 5.38938 5.41633 5.42732 5.50267 5.53497 5.61985 5.65821
5.67194 5.70487 5.73823 5.84742 5.84906 5.88583 5.89576 6.01215
6.08462 6.10307 6.19956 6.51399 7.19064 7.57432 7.61989 7.94424
8.33107 8.54145 9.21608 10.83598
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.012233 B = 0.002156 C = 0.001903
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2288.348860 B =12982.379158 C =14712.985157
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.130 3.870
3 H 0.095 0.905
4 C 0.113 3.887
5 N -0.740 5.740
6 C 0.532 3.468
7 O -0.516 6.516
8 C -0.154 4.154
9 S -0.059 6.059
10 C -0.536 4.536
11 H 0.072 0.928
12 C 0.073 3.927
13 N -0.867 5.867
14 Si 0.919 3.081
15 H -0.277 1.277
16 H -0.282 1.282
17 H -0.272 1.272
18 N -0.726 5.726
19 C 0.523 3.477
20 O -0.538 6.538
21 C -0.116 4.116
22 H 0.102 0.898
23 C -0.112 4.112
24 C -0.115 4.115
25 C -0.071 4.071
26 C -0.138 4.138
27 C -0.140 4.140
28 C -0.103 4.103
29 H 0.070 0.930
30 H 0.061 0.939
31 H 0.064 0.936
32 H 0.072 0.928
33 H 0.082 0.918
34 H 0.399 0.601
35 H 0.089 0.911
36 H 0.089 0.911
37 H 0.269 0.731
38 H 0.403 0.597
39 H 0.074 0.926
40 H 0.071 0.929
41 H 0.070 0.930
42 H 0.069 0.931
43 H 0.053 0.947
44 H 0.055 0.945
45 H 0.055 0.945
46 H 0.056 0.944
47 H 0.055 0.945
48 H 0.054 0.946
49 H 0.085 0.915
50 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.986 5.433 23.938 29.293
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.218 4.218
2 C 0.026 3.974
3 H 0.113 0.887
4 C -0.011 4.011
5 N -0.395 5.395
6 C 0.318 3.682
7 O -0.390 6.390
8 C -0.304 4.304
9 S 0.167 5.833
10 C -0.684 4.684
11 H 0.091 0.909
12 C -0.136 4.136
13 N -0.503 5.503
14 Si 0.745 3.255
15 H -0.203 1.203
16 H -0.207 1.207
17 H -0.197 1.197
18 N -0.379 5.379
19 C 0.309 3.691
20 O -0.415 6.415
21 C -0.137 4.137
22 H 0.120 0.880
23 C -0.150 4.150
24 C -0.152 4.152
25 C -0.071 4.071
26 C -0.195 4.195
27 C -0.197 4.197
28 C -0.141 4.141
29 H 0.089 0.911
30 H 0.080 0.920
31 H 0.083 0.917
32 H 0.091 0.909
33 H 0.100 0.900
34 H 0.233 0.767
35 H 0.108 0.892
36 H 0.107 0.893
37 H 0.078 0.922
38 H 0.238 0.762
39 H 0.092 0.908
40 H 0.090 0.910
41 H 0.089 0.911
42 H 0.087 0.913
43 H 0.072 0.928
44 H 0.074 0.926
45 H 0.074 0.926
46 H 0.075 0.925
47 H 0.074 0.926
48 H 0.073 0.927
49 H 0.104 0.896
50 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -17.171 5.443 22.197 28.586
hybrid contribution 2.254 0.226 1.568 2.755
sum -14.916 5.668 23.765 28.625
Atomic orbital electron populations
1.22094 0.94093 1.02634 1.03027 1.21243 0.94932 0.97849 0.83409
0.88705 1.21610 0.81145 1.01298 0.97093 1.45996 1.06791 1.62055
1.24645 1.20324 0.89532 0.76729 0.81597 1.90711 1.69867 1.45993
1.32444 1.23530 0.93487 1.05716 1.07687 1.85394 1.04631 1.72983
1.20279 1.22861 0.91500 1.44355 1.09678 0.90937 1.24996 0.99617
0.94552 0.94442 1.70014 1.35445 1.35456 1.09343 0.86165 0.82812
0.78613 0.77894 1.20262 1.20735 1.19695 1.46158 1.67766 1.14365
1.09597 1.20594 0.76991 0.87140 0.84357 1.90692 1.49906 1.16074
1.84788 1.22190 1.00854 0.97502 0.93172 0.88009 1.22467 0.98613
0.97430 0.96518 1.22493 1.01640 0.96128 0.94939 1.21192 0.95694
0.95028 0.95193 1.21902 0.96833 1.00491 1.00287 1.21925 0.97634
1.01773 0.98401 1.22230 1.02709 0.97883 0.91277 0.91105 0.92033
0.91677 0.90930 0.90005 0.76742 0.89232 0.89268 0.92165 0.76210
0.90772 0.91036 0.91081 0.91275 0.92798 0.92619 0.92598 0.92465
0.92630 0.92725 0.89603 0.91305
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.22 9.48 37.16 0.35 -0.87 16
2 C 0.13 1.12 2.73 -67.93 -0.19 0.94 16
3 H 0.09 0.96 7.58 -51.93 -0.39 0.56 16
4 C 0.11 1.18 5.23 -4.04 -0.02 1.16 16
5 N -0.74 -9.21 5.39 -60.30 -0.32 -9.53 16
6 C 0.53 9.51 7.85 -10.99 -0.09 9.43 16
7 O -0.52 -11.32 15.86 5.56 0.09 -11.23 16
8 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16
9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16
10 C -0.54 -15.12 9.50 30.94 0.29 -14.83 16
11 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16
12 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16
13 N -0.87 -25.98 13.22 55.49 0.73 -25.24 16
14 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16
15 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16
16 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16
17 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16
18 N -0.73 -5.64 4.51 -53.81 -0.24 -5.88 16
19 C 0.52 4.85 7.09 -10.98 -0.08 4.78 16
20 O -0.54 -6.96 15.08 5.55 0.08 -6.87 16
21 C -0.12 -0.82 3.25 -90.11 -0.29 -1.12 16
22 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16
23 C -0.11 -0.65 6.31 -24.74 -0.16 -0.81 16
24 C -0.11 -0.64 5.90 -25.07 -0.15 -0.79 16
25 C -0.07 -0.44 0.94 -153.39 -0.14 -0.59 16
26 C -0.14 -0.85 8.14 37.16 0.30 -0.55 16
27 C -0.14 -0.81 8.16 37.16 0.30 -0.50 16
28 C -0.10 -0.80 5.49 -25.61 -0.14 -0.94 16
29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16
31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
32 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16
33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16
34 H 0.40 4.17 8.14 -40.82 -0.33 3.84 16
35 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16
36 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16
37 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16
38 H 0.40 2.58 8.60 -40.82 -0.35 2.22 16
39 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16
40 H 0.07 0.46 8.05 -51.93 -0.42 0.05 16
41 H 0.07 0.38 7.85 -51.93 -0.41 -0.03 16
42 H 0.07 0.36 7.84 -51.93 -0.41 -0.05 16
43 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16
44 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16
45 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16
46 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16
47 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16
48 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16
49 H 0.09 0.83 6.38 -51.93 -0.33 0.50 16
50 H 0.07 0.53 7.67 -51.93 -0.40 0.13 16
LS Contribution 417.59 15.07 6.29 6.29
Total: -1.00 -34.86 417.59 -9.40 -44.27
By element:
Atomic # 1 Polarization: 10.20 SS G_CDS: -8.92 Total: 1.28 kcal
Atomic # 6 Polarization: -5.63 SS G_CDS: 0.12 Total: -5.51 kcal
Atomic # 7 Polarization: -40.82 SS G_CDS: 0.17 Total: -40.66 kcal
Atomic # 8 Polarization: -18.28 SS G_CDS: 0.17 Total: -18.11 kcal
Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal
Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal
Total LS contribution 6.29 Total: 6.29 kcal
Total: -34.86 -9.40 -44.27 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001720897201.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -64.275 kcal
(2) G-P(sol) polarization free energy of solvation -34.861 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.136 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.404 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.265 kcal
(6) G-S(sol) free energy of system = (1) + (5) -108.540 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds