Wall clock time and date at job start Sat Apr 11 2020 06:39:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09002 * 109.47007 * 2 1
4 4 C 1.52998 * 109.47089 * 240.00437 * 2 1 3
5 5 N 1.46497 * 109.47307 * 185.00008 * 4 2 1
6 6 C 1.34772 * 120.00155 * 180.02562 * 5 4 2
7 7 O 1.21282 * 120.00122 * 359.97438 * 6 5 4
8 8 C 1.50701 * 120.00002 * 179.97438 * 6 5 4
9 9 S 1.81005 * 109.47036 * 179.97438 * 8 6 5
10 10 C 1.76194 * 99.99972 * 179.97438 * 9 8 6
11 11 H 1.08003 * 120.00071 * 0.02562 * 10 9 8
12 12 C 1.38801 * 119.99993 * 180.02562 * 10 9 8
13 13 N 1.31629 * 120.00058 * 0.02562 * 12 10 9
14 14 Si 1.86796 * 120.00050 * 180.02562 * 12 10 9
15 15 H 1.48499 * 109.47480 * 89.99636 * 14 12 10
16 16 H 1.48499 * 109.47176 * 210.00139 * 14 12 10
17 17 H 1.48507 * 109.46980 * 329.99876 * 14 12 10
18 18 N 1.46498 * 109.47262 * 119.99919 * 2 1 3
19 19 C 1.34779 * 120.00043 * 274.99859 * 18 2 1
20 20 O 1.21283 * 120.00001 * 0.02562 * 19 18 2
21 21 C 1.50699 * 119.99640 * 180.02562 * 19 18 2
22 22 H 1.09001 * 110.54065 * 57.38927 * 21 19 18
23 23 C 1.54893 * 110.48463 * 294.77215 * 21 19 18
24 24 C 1.54887 * 102.74533 * 203.38295 * 23 21 19
25 25 C 1.54266 * 104.19888 * 37.94403 * 24 23 21
26 26 C 1.53001 * 110.02912 * 95.67501 * 25 24 23
27 27 C 1.53001 * 110.03274 * 217.05174 * 25 24 23
28 28 C 1.53872 * 106.59640 * 336.38805 * 25 24 23
29 29 H 1.08992 * 109.47573 * 59.99638 * 1 2 3
30 30 H 1.08996 * 109.46921 * 180.02562 * 1 2 3
31 31 H 1.09005 * 109.46751 * 299.99916 * 1 2 3
32 32 H 1.09003 * 109.46888 * 304.99636 * 4 2 1
33 33 H 1.08997 * 109.47080 * 64.99064 * 4 2 1
34 34 H 0.97002 * 120.00023 * 359.97438 * 5 4 2
35 35 H 1.08994 * 109.47231 * 299.99509 * 8 6 5
36 36 H 1.08998 * 109.47059 * 60.00055 * 8 6 5
37 37 H 0.96997 * 119.99993 * 179.97438 * 13 12 10
38 38 H 0.96993 * 119.99553 * 95.00242 * 18 2 1
39 39 H 1.09001 * 110.75228 * 85.07031 * 23 21 19
40 40 H 1.09000 * 110.75571 * 321.69664 * 23 21 19
41 41 H 1.09001 * 110.48816 * 279.26329 * 24 23 21
42 42 H 1.09004 * 110.48531 * 156.62545 * 24 23 21
43 43 H 1.08994 * 109.47374 * 61.45504 * 26 25 24
44 44 H 1.08999 * 109.46732 * 181.45527 * 26 25 24
45 45 H 1.08998 * 109.46993 * 301.45268 * 26 25 24
46 46 H 1.09004 * 109.46352 * 58.54870 * 27 25 24
47 47 H 1.08999 * 109.47066 * 178.54378 * 27 25 24
48 48 H 1.08993 * 109.47695 * 298.54960 * 27 25 24
49 49 H 1.09002 * 110.03208 * 119.28196 * 28 25 24
50 50 H 1.08996 * 110.03362 * 240.71095 * 28 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7211 -1.2493
5 7 3.5000 -0.8263 -1.1907
6 6 4.1730 -1.4281 -2.1913
7 8 3.5699 -1.8830 -3.1401
8 6 5.6750 -1.5357 -2.1312
9 16 6.2783 -2.3890 -3.6091
10 6 8.0101 -2.3749 -3.2851
11 1 8.3864 -1.9218 -2.3798
12 6 8.8908 -2.9459 -4.1933
13 7 8.4322 -3.4976 -5.2969
14 14 10.7268 -2.9315 -3.8494
15 1 11.0991 -4.1562 -3.0966
16 1 11.4707 -2.8948 -5.1341
17 1 11.0701 -1.7319 -3.0441
18 7 2.0184 -0.6906 1.1962
19 6 2.1471 -0.0182 2.3571
20 8 1.8583 1.1585 2.4117
21 6 2.6501 -0.7285 3.5874
22 1 3.6304 -1.1674 3.4017
23 6 1.6438 -1.8183 4.0335
24 6 1.9716 -1.9910 5.5374
25 6 2.2799 -0.5601 6.0243
26 6 1.0275 0.0640 6.6432
27 6 3.4131 -0.5888 7.0518
28 6 2.7112 0.2427 4.7844
29 1 -0.3634 0.5138 -0.8899
30 1 -0.3633 -1.0276 0.0005
31 1 -0.3633 0.5139 0.8900
32 1 1.6054 -1.7197 -1.2952
33 1 1.7515 -0.1582 -2.1369
34 1 3.9824 -0.4621 -0.4320
35 1 6.1093 -0.5371 -2.0852
36 1 5.9637 -2.0988 -1.2438
37 1 9.0477 -3.8963 -5.9318
38 1 2.2491 -1.6317 1.1525
39 1 1.8160 -2.7481 3.4913
40 1 0.6180 -1.4754 3.8986
41 1 2.8424 -2.6339 5.6667
42 1 1.1128 -2.3988 6.0706
43 1 0.7160 -0.5254 7.5055
44 1 1.2484 1.0832 6.9604
45 1 0.2261 0.0790 5.9046
46 1 4.2998 -1.0358 6.6022
47 1 3.6408 0.4286 7.3701
48 1 3.1063 -1.1795 7.9148
49 1 2.0284 1.0769 4.6236
50 1 3.7285 0.6120 4.9140
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001720897201.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:39:54
Heat of formation + Delta-G solvation = -131.725610 kcal
Electronic energy + Delta-G solvation = -27438.139284 eV
Core-core repulsion = 23589.073272 eV
Total energy + Delta-G solvation = -3849.066012 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-41.45621 -40.60008 -39.27906 -37.39423 -34.85635 -34.57699 -33.58574 -31.96278
-30.77500 -29.79627 -28.14511 -27.73841 -26.87388 -25.88576 -23.40946 -22.07943
-21.73736 -20.96931 -19.84509 -19.55732 -18.40685 -17.85969 -17.62367 -16.98460
-16.87307 -16.49881 -16.32177 -15.89860 -15.67195 -15.48783 -14.87523 -14.78178
-14.56205 -14.47464 -14.23589 -14.12442 -13.86795 -13.84898 -13.56774 -13.26419
-13.16222 -12.99960 -12.98116 -12.88660 -12.62343 -12.57131 -12.36253 -12.10110
-12.03000 -11.72534 -11.61942 -11.41980 -11.40566 -11.30831 -11.13988 -10.99939
-10.76155 -10.27481 -10.20039 -10.15207 -8.65948 -8.34509 -6.12141 1.26872
1.42571 1.46949 1.57209 1.59559 1.63572 2.09216 2.26617 2.31046
2.99702 3.31967 3.50548 3.54327 3.57881 3.79127 3.95261 4.04900
4.10642 4.25161 4.29487 4.30943 4.33242 4.44430 4.51226 4.55267
4.57383 4.63713 4.69364 4.71650 4.75628 4.83731 4.93418 4.96994
4.99476 5.06303 5.13707 5.15955 5.20963 5.21950 5.34770 5.37300
5.41169 5.42333 5.45773 5.52675 5.58743 6.20076 6.42545 6.52268
7.07073 7.19878 7.24130 8.74535
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.012233 B = 0.002156 C = 0.001903
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2288.348860 B =12982.379158 C =14712.985157
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C 0.141 3.859
3 H 0.083 0.917
4 C 0.116 3.884
5 N -0.713 5.713
6 C 0.537 3.463
7 O -0.562 6.562
8 C -0.131 4.131
9 S -0.148 6.148
10 C -0.546 4.546
11 H 0.082 0.918
12 C 0.013 3.987
13 N -0.910 5.910
14 Si 0.997 3.003
15 H -0.267 1.267
16 H -0.279 1.279
17 H -0.259 1.259
18 N -0.716 5.716
19 C 0.523 3.477
20 O -0.578 6.578
21 C -0.113 4.113
22 H 0.118 0.882
23 C -0.108 4.108
24 C -0.112 4.112
25 C -0.070 4.070
26 C -0.137 4.137
27 C -0.138 4.138
28 C -0.104 4.104
29 H 0.078 0.922
30 H 0.072 0.928
31 H 0.054 0.946
32 H 0.078 0.922
33 H 0.078 0.922
34 H 0.412 0.588
35 H 0.105 0.895
36 H 0.112 0.888
37 H 0.271 0.729
38 H 0.413 0.587
39 H 0.090 0.910
40 H 0.063 0.937
41 H 0.079 0.921
42 H 0.075 0.925
43 H 0.063 0.937
44 H 0.049 0.951
45 H 0.047 0.953
46 H 0.059 0.941
47 H 0.050 0.950
48 H 0.061 0.939
49 H 0.061 0.939
50 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.380 5.085 26.042 30.668
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C 0.036 3.964
3 H 0.101 0.899
4 C -0.008 4.008
5 N -0.367 5.367
6 C 0.323 3.677
7 O -0.439 6.439
8 C -0.282 4.282
9 S 0.079 5.921
10 C -0.694 4.694
11 H 0.100 0.900
12 C -0.192 4.192
13 N -0.547 5.547
14 Si 0.819 3.181
15 H -0.192 1.192
16 H -0.204 1.204
17 H -0.183 1.183
18 N -0.369 5.369
19 C 0.311 3.689
20 O -0.457 6.457
21 C -0.134 4.134
22 H 0.136 0.864
23 C -0.146 4.146
24 C -0.149 4.149
25 C -0.070 4.070
26 C -0.194 4.194
27 C -0.196 4.196
28 C -0.142 4.142
29 H 0.097 0.903
30 H 0.091 0.909
31 H 0.073 0.927
32 H 0.097 0.903
33 H 0.096 0.904
34 H 0.248 0.752
35 H 0.123 0.877
36 H 0.130 0.870
37 H 0.080 0.920
38 H 0.250 0.750
39 H 0.109 0.891
40 H 0.082 0.918
41 H 0.097 0.903
42 H 0.093 0.907
43 H 0.082 0.918
44 H 0.068 0.932
45 H 0.066 0.934
46 H 0.078 0.922
47 H 0.070 0.930
48 H 0.080 0.920
49 H 0.080 0.920
50 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -16.580 5.099 24.349 29.896
hybrid contribution 1.948 0.411 0.989 2.223
sum -14.632 5.510 25.338 29.774
Atomic orbital electron populations
1.22044 0.93005 1.03353 1.02918 1.21080 0.95604 0.96902 0.82830
0.89930 1.21720 0.79348 1.01841 0.97855 1.45720 1.07757 1.59897
1.23367 1.19995 0.88787 0.76955 0.82013 1.90705 1.70346 1.48411
1.34487 1.23377 0.94838 1.05653 1.04368 1.85552 1.05726 1.74919
1.25890 1.23197 0.91758 1.44352 1.10082 0.89982 1.26114 1.05149
0.93869 0.94037 1.70176 1.37378 1.36562 1.10574 0.84968 0.75887
0.79269 0.77953 1.19193 1.20394 1.18331 1.46079 1.67130 1.14730
1.08973 1.20972 0.76233 0.86651 0.85061 1.90683 1.51742 1.17915
1.85393 1.22227 1.01897 0.97501 0.91745 0.86443 1.22464 0.97696
0.97469 0.96932 1.22491 1.02243 0.95541 0.94626 1.21191 0.95802
0.95356 0.94684 1.21891 0.96674 1.00442 1.00421 1.21909 0.97466
1.01725 0.98474 1.22201 1.01903 0.97600 0.92466 0.90290 0.90892
0.92725 0.90327 0.90359 0.75151 0.87660 0.86996 0.92002 0.75015
0.89139 0.91849 0.90276 0.90660 0.91795 0.93169 0.93395 0.92231
0.93041 0.91985 0.91995 0.91587
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.13 9.48 71.98 0.68 -1.44 16
2 C 0.14 2.20 2.73 44.99 0.12 2.33 16
3 H 0.08 1.57 7.58 -2.39 -0.02 1.55 16
4 C 0.12 2.21 5.23 86.38 0.45 2.66 16
5 N -0.71 -16.29 5.39 -463.07 -2.49 -18.78 16
6 C 0.54 18.56 7.85 87.66 0.69 19.25 16
7 O -0.56 -24.64 15.86 -3.03 -0.05 -24.69 16
8 C -0.13 -4.99 6.16 71.24 0.44 -4.55 16
9 S -0.15 -8.04 20.57 -56.49 -1.16 -9.21 16
10 C -0.55 -30.72 9.50 67.95 0.65 -30.08 16
11 H 0.08 4.29 7.80 -2.91 -0.02 4.26 16
12 C 0.01 0.74 5.49 84.86 0.47 1.21 16
13 N -0.91 -55.36 13.22 21.65 0.29 -55.08 16
14 Si 1.00 43.11 29.55 68.60 2.03 45.13 16
15 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16
16 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16
17 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16
18 N -0.72 -9.73 4.51 -442.53 -1.99 -11.73 16
19 C 0.52 9.09 7.09 87.66 0.62 9.71 16
20 O -0.58 -14.86 15.08 -3.04 -0.05 -14.90 16
21 C -0.11 -1.41 3.25 -10.46 -0.03 -1.44 16
22 H 0.12 1.13 8.14 -2.39 -0.02 1.12 16
23 C -0.11 -1.02 6.31 31.89 0.20 -0.82 16
24 C -0.11 -0.99 5.90 31.67 0.19 -0.81 16
25 C -0.07 -0.79 0.94 -51.46 -0.05 -0.84 16
26 C -0.14 -1.60 8.14 71.98 0.59 -1.02 16
27 C -0.14 -1.38 8.16 71.98 0.59 -0.80 16
28 C -0.10 -1.53 5.49 31.32 0.17 -1.36 16
29 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16
30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16
31 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16
32 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16
33 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16
34 H 0.41 7.48 8.14 -92.71 -0.75 6.73 16
35 H 0.11 3.69 8.14 -2.40 -0.02 3.67 16
36 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16
37 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16
38 H 0.41 4.13 8.60 -92.71 -0.80 3.33 16
39 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16
40 H 0.06 0.72 8.05 -2.39 -0.02 0.70 16
41 H 0.08 0.61 7.85 -2.39 -0.02 0.59 16
42 H 0.07 0.61 7.84 -2.38 -0.02 0.59 16
43 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16
44 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16
45 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16
46 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16
47 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16
48 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16
49 H 0.06 1.23 6.38 -2.39 -0.02 1.21 16
50 H 0.07 0.98 7.67 -2.39 -0.02 0.96 16
Total: -1.00 -77.53 417.59 1.71 -75.81
By element:
Atomic # 1 Polarization: 22.07 SS G_CDS: -0.62 Total: 21.45 kcal
Atomic # 6 Polarization: -13.78 SS G_CDS: 5.77 Total: -8.01 kcal
Atomic # 7 Polarization: -81.38 SS G_CDS: -4.20 Total: -85.59 kcal
Atomic # 8 Polarization: -39.50 SS G_CDS: -0.09 Total: -39.59 kcal
Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal
Atomic # 16 Polarization: -8.04 SS G_CDS: -1.16 Total: -9.21 kcal
Total: -77.53 1.71 -75.81 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001720897201.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -55.912 kcal
(2) G-P(sol) polarization free energy of solvation -77.526 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.438 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.712 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.814 kcal
(6) G-S(sol) free energy of system = (1) + (5) -131.726 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds