Wall clock time and date at job start Sat Apr 11 2020 06:41:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.08997 * 110.30393 * 2 1
4 4 C 1.54389 * 110.34527 * 122.28656 * 2 1 3
5 5 N 1.48141 * 104.61913 * 142.73780 * 4 2 1
6 6 C 1.34772 * 127.84201 * 140.41307 * 5 4 2
7 7 O 1.21278 * 120.00532 * 179.97438 * 6 5 4
8 8 C 1.50702 * 119.99932 * 359.97250 * 6 5 4
9 9 S 1.80995 * 109.47500 * 180.02562 * 8 6 5
10 10 C 1.76197 * 100.00082 * 180.02562 * 9 8 6
11 11 H 1.08003 * 120.00005 * 0.02562 * 10 9 8
12 12 C 1.38800 * 120.00231 * 180.02562 * 10 9 8
13 13 N 1.31632 * 119.99883 * 359.97438 * 12 10 9
14 14 Si 1.86801 * 120.00293 * 180.02562 * 12 10 9
15 15 H 1.48502 * 109.47267 * 59.99830 * 14 12 10
16 16 H 1.48498 * 109.47141 * 179.97438 * 14 12 10
17 17 H 1.48494 * 109.46995 * 299.99747 * 14 12 10
18 18 C 1.48425 * 104.33688 * 320.38860 * 5 4 2
19 19 C 1.54289 * 110.34104 * 237.82487 * 2 1 3
20 20 H 1.08994 * 110.34121 * 0.10528 * 19 2 1
21 21 N 1.46903 * 110.34115 * 122.26137 * 19 2 1
22 22 C 1.46898 * 110.99673 * 203.52519 * 21 19 2
23 23 C 1.53006 * 109.47006 * 179.97438 * 22 21 19
24 24 C 1.53177 * 109.54207 * 294.55547 * 23 22 21
25 25 C 1.53096 * 109.15856 * 183.15084 * 24 23 22
26 26 O 1.42898 * 109.41549 * 57.60988 * 25 24 23
27 27 C 1.42902 * 114.09893 * 298.83734 * 26 25 24
28 28 C 1.53096 * 109.41177 * 61.16006 * 27 26 25
29 29 H 1.09004 * 109.47153 * 182.17787 * 1 2 3
30 30 H 1.08998 * 109.47044 * 302.17087 * 1 2 3
31 31 H 1.09004 * 109.47397 * 62.17713 * 1 2 3
32 32 H 1.08993 * 110.40669 * 261.52473 * 4 2 1
33 33 H 1.09005 * 110.40308 * 23.95455 * 4 2 1
34 34 H 1.09000 * 109.47461 * 300.00725 * 8 6 5
35 35 H 1.09007 * 109.47161 * 60.00023 * 8 6 5
36 36 H 0.97000 * 120.00302 * 180.02562 * 13 12 10
37 37 H 1.08992 * 110.44937 * 280.87104 * 18 5 4
38 38 H 1.09001 * 110.49088 * 158.35247 * 18 5 4
39 39 H 1.00895 * 111.00497 * 79.56441 * 21 19 2
40 40 H 1.09001 * 109.47062 * 59.99745 * 22 21 19
41 41 H 1.08993 * 109.47084 * 299.99192 * 22 21 19
42 42 H 1.09005 * 109.53985 * 54.82170 * 23 22 21
43 43 H 1.08994 * 109.52712 * 303.05825 * 24 23 22
44 44 H 1.09003 * 109.52178 * 63.25131 * 24 23 22
45 45 H 1.08998 * 109.48045 * 297.62271 * 25 24 23
46 46 H 1.09005 * 109.48881 * 177.59881 * 25 24 23
47 47 H 1.08994 * 109.48227 * 301.17546 * 27 26 25
48 48 H 1.09003 * 109.48957 * 181.14476 * 27 26 25
49 49 H 1.08994 * 109.52401 * 182.48434 * 28 27 26
50 50 H 1.09000 * 109.52150 * 62.29624 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9082 1.0222 0.0000
4 6 2.0667 -0.7732 1.2238
5 7 3.2664 -1.4823 0.7212
6 6 4.4425 -1.6676 1.3528
7 8 5.3366 -2.2758 0.8037
8 6 4.6466 -1.1190 2.7415
9 16 6.3145 -1.5283 3.3129
10 6 6.2800 -0.7894 4.9121
11 1 5.3908 -0.2794 5.2522
12 6 7.3955 -0.8627 5.7347
13 7 8.4791 -1.4847 5.3204
14 14 7.3587 -0.0800 7.4304
15 1 6.2765 -0.6982 8.2377
16 1 8.6640 -0.2973 8.1043
17 1 7.1063 1.3773 7.2975
18 6 2.8795 -1.9431 -0.6356
19 6 2.0663 -0.7704 -1.2245
20 1 1.2397 -1.1471 -1.8269
21 7 2.9332 0.0967 -2.0337
22 6 3.0008 -0.3758 -3.4230
23 6 3.9101 0.5506 -4.2330
24 6 3.2769 1.9426 -4.3197
25 6 4.1539 2.8398 -5.1970
26 8 4.2984 2.2461 -6.4888
27 6 4.9279 0.9633 -6.4743
28 6 4.0819 -0.0093 -5.6484
29 1 -0.3634 -1.0270 0.0391
30 1 -0.3633 0.5472 0.8699
31 1 -0.3634 0.4797 -0.9089
32 1 2.3400 -0.0814 2.0204
33 1 1.3234 -1.4876 1.5778
34 1 4.5236 -0.0361 2.7261
35 1 3.9126 -1.5583 3.4173
36 1 9.2586 -1.5363 5.8954
37 1 2.2625 -2.8393 -0.5718
38 1 3.7657 -2.1330 -1.2412
39 1 3.8551 0.1648 -1.6296
40 1 2.0008 -0.3731 -3.8568
41 1 3.4029 -1.3886 -3.4431
42 1 4.8838 0.6210 -3.7480
43 1 2.2825 1.8637 -4.7589
44 1 3.2018 2.3715 -3.3205
45 1 5.1355 2.9511 -4.7362
46 1 3.6864 3.8194 -5.2973
47 1 5.9195 1.0500 -6.0303
48 1 5.0178 0.5908 -7.4947
49 1 4.5824 -0.9763 -5.5993
50 1 3.1038 -0.1276 -6.1145
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001724935032.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:41:05
Heat of formation + Delta-G solvation = -92.051992 kcal
Electronic energy + Delta-G solvation = -27848.742576 eV
Core-core repulsion = 24001.396942 eV
Total energy + Delta-G solvation = -3847.345635 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-40.19125 -39.59340 -37.87777 -35.96217 -33.41719 -32.46669 -32.42318 -31.36117
-29.99641 -28.08910 -26.52478 -26.01895 -25.43812 -23.81493 -23.25323 -22.15810
-20.64113 -19.93774 -19.39233 -17.71788 -16.78294 -16.53345 -16.34994 -16.10968
-15.50951 -15.24397 -15.17579 -15.05647 -14.94943 -14.81801 -14.03784 -14.00232
-13.73482 -13.51025 -13.12872 -13.02118 -12.75752 -12.61345 -12.59726 -12.38959
-12.19791 -12.05080 -11.86879 -11.61156 -11.30572 -11.24837 -11.13192 -11.05558
-11.05102 -10.96709 -10.80675 -10.77136 -10.51120 -9.84162 -9.76858 -9.45003
-9.07651 -8.95528 -8.39184 -8.26170 -6.52498 -6.23105 -3.94146 2.85466
3.01296 3.22374 3.24415 3.27999 3.58272 3.60147 3.78311 4.18645
4.31907 4.37728 4.39405 4.54768 4.56692 4.73650 4.84327 4.94261
4.95738 5.04248 5.07861 5.11927 5.12431 5.17291 5.26611 5.29233
5.32373 5.35182 5.39947 5.47940 5.48980 5.52674 5.57820 5.60154
5.62202 5.66438 5.78050 5.82574 5.85874 5.89661 5.93402 6.05278
6.08342 6.11507 6.26980 6.80734 6.91817 7.09294 7.57601 7.68169
8.33418 8.51348 9.21978 10.84298
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.012563 B = 0.002288 C = 0.002109
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2228.230869 B =12233.890986 C =13274.295820
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.097 4.097
3 H 0.093 0.907
4 C 0.103 3.897
5 N -0.628 5.628
6 C 0.554 3.446
7 O -0.518 6.518
8 C -0.146 4.146
9 S -0.060 6.060
10 C -0.535 4.535
11 H 0.072 0.928
12 C 0.074 3.926
13 N -0.868 5.868
14 Si 0.919 3.081
15 H -0.274 1.274
16 H -0.283 1.283
17 H -0.274 1.274
18 C 0.077 3.923
19 C 0.079 3.921
20 H 0.092 0.908
21 N -0.678 5.678
22 C 0.064 3.936
23 C -0.089 4.089
24 C -0.139 4.139
25 C 0.057 3.943
26 O -0.387 6.387
27 C 0.061 3.939
28 C -0.151 4.151
29 H 0.055 0.945
30 H 0.059 0.941
31 H 0.059 0.941
32 H 0.083 0.917
33 H 0.070 0.930
34 H 0.089 0.911
35 H 0.088 0.912
36 H 0.269 0.731
37 H 0.069 0.931
38 H 0.079 0.921
39 H 0.347 0.653
40 H 0.072 0.928
41 H 0.032 0.968
42 H 0.072 0.928
43 H 0.067 0.933
44 H 0.085 0.915
45 H 0.049 0.951
46 H 0.092 0.908
47 H 0.050 0.950
48 H 0.092 0.908
49 H 0.073 0.927
50 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.825 5.074 -19.858 26.517
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.117 4.117
3 H 0.111 0.889
4 C -0.021 4.021
5 N -0.366 5.366
6 C 0.343 3.657
7 O -0.392 6.392
8 C -0.296 4.296
9 S 0.166 5.834
10 C -0.684 4.684
11 H 0.090 0.910
12 C -0.136 4.136
13 N -0.503 5.503
14 Si 0.745 3.255
15 H -0.199 1.199
16 H -0.208 1.208
17 H -0.199 1.199
18 C -0.048 4.048
19 C -0.033 4.033
20 H 0.110 0.890
21 N -0.309 5.309
22 C -0.065 4.065
23 C -0.108 4.108
24 C -0.177 4.177
25 C -0.020 4.020
26 O -0.305 6.305
27 C -0.016 4.016
28 C -0.189 4.189
29 H 0.074 0.926
30 H 0.078 0.922
31 H 0.078 0.922
32 H 0.101 0.899
33 H 0.089 0.911
34 H 0.107 0.893
35 H 0.107 0.893
36 H 0.079 0.921
37 H 0.087 0.913
38 H 0.098 0.902
39 H 0.166 0.834
40 H 0.091 0.909
41 H 0.050 0.950
42 H 0.090 0.910
43 H 0.086 0.914
44 H 0.103 0.897
45 H 0.068 0.932
46 H 0.110 0.890
47 H 0.068 0.932
48 H 0.110 0.890
49 H 0.091 0.909
50 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -15.730 4.640 -20.865 26.539
hybrid contribution -0.437 0.154 2.181 2.230
sum -16.168 4.794 -18.684 25.168
Atomic orbital electron populations
1.21780 0.93903 1.01846 1.02188 1.22149 0.95881 1.00603 0.93057
0.88867 1.22516 0.87006 0.95592 0.96990 1.49045 1.13340 1.57200
1.16976 1.20019 0.79679 0.78923 0.87085 1.90708 1.40749 1.40631
1.67144 1.23497 1.07674 1.03722 0.94750 1.85391 1.06343 1.73791
1.17858 1.22812 1.02858 1.41446 1.01241 0.90979 1.24994 0.94533
0.95164 0.98870 1.70007 1.03217 1.39988 1.37100 0.86220 0.77562
0.79567 0.82137 1.19926 1.20794 1.19904 1.23032 0.99416 0.97417
0.84967 1.22627 0.95492 0.91007 0.94128 0.88998 1.60623 1.17497
1.50900 1.01831 1.22022 0.99818 0.96000 0.88676 1.21200 0.99302
0.95400 0.94873 1.22114 0.99358 0.95041 1.01144 1.22658 0.99087
0.96497 0.83765 1.87915 1.80931 1.32851 1.28849 1.22549 0.94942
0.83361 1.00708 1.22212 1.01582 0.99370 0.95714 0.92618 0.92202
0.92164 0.89898 0.91145 0.89276 0.89345 0.92108 0.91289 0.90237
0.83375 0.90916 0.94979 0.90984 0.91402 0.89687 0.93244 0.89018
0.93164 0.88995 0.90876 0.90980
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -0.91 8.92 37.16 0.33 -0.58 16
2 C -0.10 -0.82 3.45 -89.22 -0.31 -1.13 16
3 H 0.09 0.88 7.95 -51.93 -0.41 0.46 16
4 C 0.10 1.07 6.46 -2.41 -0.02 1.06 16
5 N -0.63 -8.83 3.32 -169.09 -0.56 -9.39 16
6 C 0.55 10.62 7.93 -10.99 -0.09 10.54 16
7 O -0.52 -11.97 16.14 5.56 0.09 -11.88 16
8 C -0.15 -2.99 5.13 36.01 0.18 -2.81 16
9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16
10 C -0.54 -15.24 9.50 30.94 0.29 -14.95 16
11 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16
12 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16
13 N -0.87 -26.18 13.22 55.49 0.73 -25.44 16
14 Si 0.92 21.36 29.55 -169.99 -5.02 16.34 16
15 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16
16 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16
17 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16
18 C 0.08 0.87 6.49 -2.25 -0.01 0.86 16
19 C 0.08 0.68 3.02 -66.31 -0.20 0.48 16
20 H 0.09 0.69 7.41 -51.93 -0.38 0.30 16
21 N -0.68 -6.09 5.70 -105.25 -0.60 -6.69 16
22 C 0.06 0.51 4.92 -3.82 -0.02 0.49 16
23 C -0.09 -0.70 2.42 -90.43 -0.22 -0.92 16
24 C -0.14 -1.09 5.27 -26.59 -0.14 -1.24 16
25 C 0.06 0.46 6.84 37.21 0.25 0.72 16
26 O -0.39 -3.79 10.77 -35.23 -0.38 -4.17 16
27 C 0.06 0.48 6.84 37.21 0.25 0.73 16
28 C -0.15 -1.09 5.42 -26.59 -0.14 -1.23 16
29 H 0.05 0.34 8.10 -51.93 -0.42 -0.08 16
30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16
31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16
32 H 0.08 0.88 7.30 -51.93 -0.38 0.50 16
33 H 0.07 0.66 7.83 -51.93 -0.41 0.25 16
34 H 0.09 1.70 7.95 -51.92 -0.41 1.29 16
35 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16
36 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16
37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16
38 H 0.08 1.04 7.60 -51.93 -0.39 0.64 16
39 H 0.35 3.77 8.46 -39.29 -0.33 3.44 16
40 H 0.07 0.54 8.07 -51.93 -0.42 0.13 16
41 H 0.03 0.27 7.96 -51.93 -0.41 -0.14 16
42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16
44 H 0.08 0.71 7.87 -51.93 -0.41 0.30 16
45 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16
46 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16
47 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16
48 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16
49 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16
50 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16
LS Contribution 409.04 15.07 6.16 6.16
Total: -1.00 -33.69 409.04 -10.71 -44.41
By element:
Atomic # 1 Polarization: 9.49 SS G_CDS: -9.00 Total: 0.49 kcal
Atomic # 6 Polarization: -6.05 SS G_CDS: 0.08 Total: -5.97 kcal
Atomic # 7 Polarization: -41.10 SS G_CDS: -0.43 Total: -41.53 kcal
Atomic # 8 Polarization: -15.75 SS G_CDS: -0.29 Total: -16.04 kcal
Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal
Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal
Total LS contribution 6.16 Total: 6.16 kcal
Total: -33.69 -10.71 -44.41 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001724935032.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -47.646 kcal
(2) G-P(sol) polarization free energy of solvation -33.691 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.337 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.715 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.406 kcal
(6) G-S(sol) free energy of system = (1) + (5) -92.052 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds