Wall clock time and date at job start Sat Apr 11 2020 06:41:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.08997 * 110.30393 * 2 1
4 4 C 1.54389 * 110.34527 * 122.28656 * 2 1 3
5 5 N 1.48141 * 104.61913 * 142.73780 * 4 2 1
6 6 C 1.34772 * 127.84201 * 140.41307 * 5 4 2
7 7 O 1.21278 * 120.00532 * 179.97438 * 6 5 4
8 8 C 1.50702 * 119.99932 * 359.97250 * 6 5 4
9 9 S 1.80995 * 109.47500 * 180.02562 * 8 6 5
10 10 C 1.76197 * 100.00082 * 180.02562 * 9 8 6
11 11 H 1.08003 * 120.00005 * 0.02562 * 10 9 8
12 12 C 1.38800 * 120.00231 * 180.02562 * 10 9 8
13 13 N 1.31632 * 119.99883 * 359.97438 * 12 10 9
14 14 Si 1.86801 * 120.00293 * 180.02562 * 12 10 9
15 15 H 1.48502 * 109.47267 * 59.99830 * 14 12 10
16 16 H 1.48498 * 109.47141 * 179.97438 * 14 12 10
17 17 H 1.48494 * 109.46995 * 299.99747 * 14 12 10
18 18 C 1.48425 * 104.33688 * 320.38860 * 5 4 2
19 19 C 1.54289 * 110.34104 * 237.82487 * 2 1 3
20 20 H 1.08994 * 110.34121 * 0.10528 * 19 2 1
21 21 N 1.46903 * 110.34115 * 122.26137 * 19 2 1
22 22 C 1.46898 * 110.99673 * 203.52519 * 21 19 2
23 23 C 1.53006 * 109.47006 * 179.97438 * 22 21 19
24 24 C 1.53177 * 109.54207 * 294.55547 * 23 22 21
25 25 C 1.53096 * 109.15856 * 183.15084 * 24 23 22
26 26 O 1.42898 * 109.41549 * 57.60988 * 25 24 23
27 27 C 1.42902 * 114.09893 * 298.83734 * 26 25 24
28 28 C 1.53096 * 109.41177 * 61.16006 * 27 26 25
29 29 H 1.09004 * 109.47153 * 182.17787 * 1 2 3
30 30 H 1.08998 * 109.47044 * 302.17087 * 1 2 3
31 31 H 1.09004 * 109.47397 * 62.17713 * 1 2 3
32 32 H 1.08993 * 110.40669 * 261.52473 * 4 2 1
33 33 H 1.09005 * 110.40308 * 23.95455 * 4 2 1
34 34 H 1.09000 * 109.47461 * 300.00725 * 8 6 5
35 35 H 1.09007 * 109.47161 * 60.00023 * 8 6 5
36 36 H 0.97000 * 120.00302 * 180.02562 * 13 12 10
37 37 H 1.08992 * 110.44937 * 280.87104 * 18 5 4
38 38 H 1.09001 * 110.49088 * 158.35247 * 18 5 4
39 39 H 1.00895 * 111.00497 * 79.56441 * 21 19 2
40 40 H 1.09001 * 109.47062 * 59.99745 * 22 21 19
41 41 H 1.08993 * 109.47084 * 299.99192 * 22 21 19
42 42 H 1.09005 * 109.53985 * 54.82170 * 23 22 21
43 43 H 1.08994 * 109.52712 * 303.05825 * 24 23 22
44 44 H 1.09003 * 109.52178 * 63.25131 * 24 23 22
45 45 H 1.08998 * 109.48045 * 297.62271 * 25 24 23
46 46 H 1.09005 * 109.48881 * 177.59881 * 25 24 23
47 47 H 1.08994 * 109.48227 * 301.17546 * 27 26 25
48 48 H 1.09003 * 109.48957 * 181.14476 * 27 26 25
49 49 H 1.08994 * 109.52401 * 182.48434 * 28 27 26
50 50 H 1.09000 * 109.52150 * 62.29624 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9082 1.0222 0.0000
4 6 2.0667 -0.7732 1.2238
5 7 3.2664 -1.4823 0.7212
6 6 4.4425 -1.6676 1.3528
7 8 5.3366 -2.2758 0.8037
8 6 4.6466 -1.1190 2.7415
9 16 6.3145 -1.5283 3.3129
10 6 6.2800 -0.7894 4.9121
11 1 5.3908 -0.2794 5.2522
12 6 7.3955 -0.8627 5.7347
13 7 8.4791 -1.4847 5.3204
14 14 7.3587 -0.0800 7.4304
15 1 6.2765 -0.6982 8.2377
16 1 8.6640 -0.2973 8.1043
17 1 7.1063 1.3773 7.2975
18 6 2.8795 -1.9431 -0.6356
19 6 2.0663 -0.7704 -1.2245
20 1 1.2397 -1.1471 -1.8269
21 7 2.9332 0.0967 -2.0337
22 6 3.0008 -0.3758 -3.4230
23 6 3.9101 0.5506 -4.2330
24 6 3.2769 1.9426 -4.3197
25 6 4.1539 2.8398 -5.1970
26 8 4.2984 2.2461 -6.4888
27 6 4.9279 0.9633 -6.4743
28 6 4.0819 -0.0093 -5.6484
29 1 -0.3634 -1.0270 0.0391
30 1 -0.3633 0.5472 0.8699
31 1 -0.3634 0.4797 -0.9089
32 1 2.3400 -0.0814 2.0204
33 1 1.3234 -1.4876 1.5778
34 1 4.5236 -0.0361 2.7261
35 1 3.9126 -1.5583 3.4173
36 1 9.2586 -1.5363 5.8954
37 1 2.2625 -2.8393 -0.5718
38 1 3.7657 -2.1330 -1.2412
39 1 3.8551 0.1648 -1.6296
40 1 2.0008 -0.3731 -3.8568
41 1 3.4029 -1.3886 -3.4431
42 1 4.8838 0.6210 -3.7480
43 1 2.2825 1.8637 -4.7589
44 1 3.2018 2.3715 -3.3205
45 1 5.1355 2.9511 -4.7362
46 1 3.6864 3.8194 -5.2973
47 1 5.9195 1.0500 -6.0303
48 1 5.0178 0.5908 -7.4947
49 1 4.5824 -0.9763 -5.5993
50 1 3.1038 -0.1276 -6.1145
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001724935032.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:41:04
Heat of formation + Delta-G solvation = -114.710348 kcal
Electronic energy + Delta-G solvation = -27849.725116 eV
Core-core repulsion = 24001.396942 eV
Total energy + Delta-G solvation = -3848.328175 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-41.23253 -40.34371 -39.10276 -36.75625 -34.60752 -34.33991 -33.22821 -31.98764
-31.37178 -29.09428 -27.70978 -27.28418 -26.81276 -24.45899 -24.06286 -22.87521
-21.33434 -20.79341 -20.65512 -19.59565 -18.13683 -17.31210 -17.18238 -16.92753
-16.89933 -16.66132 -16.25643 -16.09778 -15.92006 -15.69639 -15.58227 -15.02596
-14.82997 -14.53526 -14.27694 -13.91065 -13.72783 -13.56841 -13.45716 -13.25556
-13.20784 -13.12920 -12.95514 -12.87850 -12.82656 -12.63415 -12.22825 -12.00040
-11.96164 -11.80567 -11.77968 -11.61455 -11.44308 -11.15349 -11.14584 -10.98677
-10.43832 -10.31561 -9.99631 -9.29017 -8.70450 -8.36350 -6.15441 1.21077
1.43015 1.43032 1.52242 1.53665 2.03789 2.25715 2.96533 2.97717
3.07009 3.22145 3.50495 3.57095 3.73329 3.86280 3.92237 3.97094
4.10782 4.14405 4.15297 4.24568 4.32632 4.37355 4.40591 4.45807
4.49449 4.52793 4.61290 4.68064 4.69502 4.71435 4.79696 4.82161
4.87017 4.93809 4.94954 5.00250 5.15182 5.17937 5.20616 5.28344
5.34874 5.39411 5.42750 5.49693 6.09580 6.17662 6.24425 6.27632
6.40371 7.04518 7.07105 8.72737
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.012563 B = 0.002288 C = 0.002109
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2228.230869 B =12233.890986 C =13274.295820
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.087 4.087
3 H 0.085 0.915
4 C 0.095 3.905
5 N -0.620 5.620
6 C 0.552 3.448
7 O -0.570 6.570
8 C -0.119 4.119
9 S -0.150 6.150
10 C -0.546 4.546
11 H 0.083 0.917
12 C 0.013 3.987
13 N -0.912 5.912
14 Si 0.999 3.001
15 H -0.261 1.261
16 H -0.278 1.278
17 H -0.261 1.261
18 C 0.074 3.926
19 C 0.088 3.912
20 H 0.116 0.884
21 N -0.677 5.677
22 C 0.068 3.932
23 C -0.088 4.088
24 C -0.130 4.130
25 C 0.053 3.947
26 O -0.404 6.404
27 C 0.056 3.944
28 C -0.145 4.145
29 H 0.065 0.935
30 H 0.065 0.935
31 H 0.067 0.933
32 H 0.082 0.918
33 H 0.092 0.908
34 H 0.105 0.895
35 H 0.104 0.896
36 H 0.272 0.728
37 H 0.086 0.914
38 H 0.058 0.942
39 H 0.334 0.666
40 H 0.085 0.915
41 H 0.027 0.973
42 H 0.056 0.944
43 H 0.069 0.931
44 H 0.080 0.920
45 H 0.045 0.955
46 H 0.102 0.898
47 H 0.047 0.953
48 H 0.105 0.895
49 H 0.078 0.922
50 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.890 6.073 -19.676 28.629
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.107 4.107
3 H 0.103 0.897
4 C -0.027 4.027
5 N -0.355 5.355
6 C 0.340 3.660
7 O -0.448 6.448
8 C -0.270 4.270
9 S 0.077 5.923
10 C -0.694 4.694
11 H 0.101 0.899
12 C -0.191 4.191
13 N -0.548 5.548
14 Si 0.820 3.180
15 H -0.186 1.186
16 H -0.204 1.204
17 H -0.186 1.186
18 C -0.050 4.050
19 C -0.023 4.023
20 H 0.134 0.866
21 N -0.307 5.307
22 C -0.061 4.061
23 C -0.107 4.107
24 C -0.168 4.168
25 C -0.023 4.023
26 O -0.324 6.324
27 C -0.020 4.020
28 C -0.184 4.184
29 H 0.084 0.916
30 H 0.084 0.916
31 H 0.086 0.914
32 H 0.100 0.900
33 H 0.110 0.890
34 H 0.123 0.877
35 H 0.123 0.877
36 H 0.081 0.919
37 H 0.104 0.896
38 H 0.077 0.923
39 H 0.152 0.848
40 H 0.104 0.896
41 H 0.045 0.955
42 H 0.075 0.925
43 H 0.088 0.912
44 H 0.099 0.901
45 H 0.064 0.936
46 H 0.120 0.880
47 H 0.065 0.935
48 H 0.123 0.877
49 H 0.097 0.903
50 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -18.873 5.659 -20.709 28.585
hybrid contribution 0.412 -0.156 2.006 2.053
sum -18.460 5.503 -18.704 26.849
Atomic orbital electron populations
1.21744 0.91739 1.02727 1.02883 1.22093 0.97427 0.99569 0.91618
0.89657 1.22871 0.85742 0.96083 0.98035 1.48956 1.12617 1.56014
1.17867 1.19707 0.80770 0.78815 0.86660 1.90685 1.42910 1.43191
1.68060 1.23282 1.02943 1.04757 0.95998 1.85571 1.12820 1.74797
1.19079 1.23149 1.03516 1.41474 1.01275 0.89934 1.26148 0.93876
0.95504 1.03611 1.70177 1.04111 1.41551 1.38954 0.84996 0.77947
0.78897 0.76117 1.18585 1.20355 1.18573 1.23288 0.99180 0.99396
0.83183 1.22678 0.95416 0.89805 0.94399 0.86588 1.60688 1.16734
1.50922 1.02310 1.22021 1.00372 0.95577 0.88087 1.21176 0.98565
0.95680 0.95271 1.22020 0.99255 0.94789 1.00730 1.22743 0.99123
0.97049 0.83405 1.87889 1.81161 1.33702 1.29620 1.22684 0.94787
0.82907 1.01661 1.22169 1.01794 0.99371 0.95026 0.91621 0.91621
0.91440 0.89967 0.89000 0.87701 0.87737 0.91944 0.89583 0.92336
0.84805 0.89637 0.95477 0.92544 0.91209 0.90145 0.93618 0.88013
0.93463 0.87670 0.90338 0.90478
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.22 8.92 71.98 0.64 -0.58 16
2 C -0.09 -1.23 3.45 -9.89 -0.03 -1.26 16
3 H 0.09 1.40 7.95 -2.39 -0.02 1.38 16
4 C 0.09 1.74 6.46 86.54 0.56 2.30 16
5 N -0.62 -16.76 3.32 -807.26 -2.68 -19.44 16
6 C 0.55 21.38 7.93 87.66 0.70 22.08 16
7 O -0.57 -27.38 16.14 -3.02 -0.05 -27.43 16
8 C -0.12 -4.87 5.13 71.24 0.37 -4.51 16
9 S -0.15 -8.45 20.57 -56.49 -1.16 -9.61 16
10 C -0.55 -31.38 9.50 67.95 0.65 -30.74 16
11 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16
12 C 0.01 0.76 5.49 84.86 0.47 1.23 16
13 N -0.91 -56.28 13.22 21.65 0.29 -55.99 16
14 Si 1.00 43.57 29.55 68.60 2.03 45.59 16
15 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16
16 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16
17 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16
18 C 0.07 1.58 6.49 86.48 0.56 2.14 16
19 C 0.09 1.32 3.02 45.82 0.14 1.45 16
20 H 0.12 1.27 7.41 -2.39 -0.02 1.25 16
21 N -0.68 -11.28 5.70 -486.89 -2.78 -14.05 16
22 C 0.07 0.99 4.92 86.31 0.43 1.41 16
23 C -0.09 -1.34 2.42 -10.67 -0.03 -1.36 16
24 C -0.13 -1.93 5.27 30.69 0.16 -1.77 16
25 C 0.05 0.84 6.84 72.01 0.49 1.34 16
26 O -0.40 -7.65 10.77 -148.98 -1.60 -9.25 16
27 C 0.06 0.84 6.84 72.01 0.49 1.33 16
28 C -0.15 -1.96 5.42 30.68 0.17 -1.79 16
29 H 0.06 0.51 8.10 -2.39 -0.02 0.49 16
30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16
31 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16
32 H 0.08 1.55 7.30 -2.39 -0.02 1.53 16
33 H 0.09 1.37 7.83 -2.38 -0.02 1.36 16
34 H 0.10 3.94 7.95 -2.40 -0.02 3.92 16
35 H 0.10 3.92 8.14 -2.39 -0.02 3.90 16
36 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16
37 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16
38 H 0.06 1.53 7.60 -2.39 -0.02 1.52 16
39 H 0.33 7.21 8.46 -89.70 -0.76 6.45 16
40 H 0.09 1.05 8.07 -2.39 -0.02 1.03 16
41 H 0.03 0.43 7.96 -2.39 -0.02 0.41 16
42 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16
43 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16
44 H 0.08 1.27 7.87 -2.39 -0.02 1.25 16
45 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16
46 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16
47 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16
48 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16
49 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16
50 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16
Total: -1.00 -75.88 409.04 -0.06 -75.93
By element:
Atomic # 1 Polarization: 22.83 SS G_CDS: 0.15 Total: 22.98 kcal
Atomic # 6 Polarization: -14.48 SS G_CDS: 5.75 Total: -8.72 kcal
Atomic # 7 Polarization: -84.32 SS G_CDS: -5.17 Total: -89.49 kcal
Atomic # 8 Polarization: -35.03 SS G_CDS: -1.65 Total: -36.68 kcal
Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal
Atomic # 16 Polarization: -8.45 SS G_CDS: -1.16 Total: -9.61 kcal
Total: -75.88 -0.06 -75.93 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001724935032.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.776 kcal
(2) G-P(sol) polarization free energy of solvation -75.878 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.654 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.057 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.935 kcal
(6) G-S(sol) free energy of system = (1) + (5) -114.710 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds