Wall clock time and date at job start Sat Apr 11 2020 06:41:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 S 1.81402 * 109.46783 * 2 1
4 4 C 1.81401 * 103.00130 * 180.02562 * 3 2 1
5 5 H 1.09003 * 109.46904 * 305.00219 * 4 3 2
6 6 C 1.52998 * 109.47137 * 64.99801 * 4 3 2
7 7 C 1.53006 * 109.47063 * 180.02562 * 6 4 3
8 8 C 1.52999 * 109.47148 * 300.00349 * 7 6 4
9 9 C 1.53004 * 109.47194 * 59.99641 * 8 7 6
10 10 C 1.52997 * 109.47278 * 300.00130 * 9 8 7
11 11 H 1.09004 * 109.46812 * 180.02562 * 10 9 8
12 12 N 1.46498 * 109.47036 * 300.00073 * 10 9 8
13 13 C 1.34777 * 119.99828 * 274.72131 * 12 10 9
14 14 O 1.21353 * 120.00267 * 0.28147 * 13 12 10
15 15 C 1.49454 * 120.00301 * 180.27890 * 13 12 10
16 16 O 1.21353 * 119.99427 * 359.97438 * 15 13 12
17 17 N 1.34777 * 120.00297 * 180.02562 * 15 13 12
18 18 C 1.46495 * 119.99663 * 180.02562 * 17 15 13
19 19 C 1.53004 * 109.46738 * 179.97438 * 18 17 15
20 20 C 1.53000 * 109.46988 * 179.97438 * 19 18 17
21 21 C 1.50701 * 109.46979 * 180.02562 * 20 19 18
22 22 H 1.07998 * 120.00149 * 359.97438 * 21 20 19
23 23 C 1.37882 * 119.99762 * 180.02562 * 21 20 19
24 24 N 1.31515 * 120.00097 * 359.97438 * 23 21 20
25 25 Si 1.86803 * 119.99835 * 179.97438 * 23 21 20
26 26 H 1.48499 * 109.47041 * 359.97438 * 25 23 21
27 27 H 1.48497 * 109.46896 * 119.99624 * 25 23 21
28 28 H 1.48496 * 109.47151 * 239.99581 * 25 23 21
29 29 H 1.08993 * 109.47223 * 60.00278 * 1 2 3
30 30 H 1.09002 * 109.46788 * 179.97438 * 1 2 3
31 31 H 1.08998 * 109.47508 * 299.99705 * 1 2 3
32 32 H 1.08998 * 109.47508 * 240.00295 * 2 1 3
33 33 H 1.08994 * 109.47742 * 119.99805 * 2 1 3
34 34 H 1.08997 * 109.47266 * 300.00458 * 6 4 3
35 35 H 1.09003 * 109.46883 * 60.00405 * 6 4 3
36 36 H 1.09003 * 109.47067 * 60.00362 * 7 6 4
37 37 H 1.08995 * 109.47185 * 180.02562 * 7 6 4
38 38 H 1.09000 * 109.47204 * 179.97438 * 8 7 6
39 39 H 1.09003 * 109.47147 * 299.99964 * 8 7 6
40 40 H 1.08997 * 109.47037 * 179.97438 * 9 8 7
41 41 H 1.09003 * 109.46809 * 60.00116 * 9 8 7
42 42 H 0.97001 * 120.00384 * 95.00578 * 12 10 9
43 43 H 0.97000 * 119.99736 * 359.97438 * 17 15 13
44 44 H 1.09007 * 109.47376 * 299.99203 * 18 17 15
45 45 H 1.08997 * 109.47774 * 59.99894 * 18 17 15
46 46 H 1.09006 * 109.47053 * 299.99454 * 19 18 17
47 47 H 1.08997 * 109.47419 * 59.99839 * 19 18 17
48 48 H 1.09007 * 109.47300 * 299.99413 * 20 19 18
49 49 H 1.08997 * 109.47600 * 59.99950 * 20 19 18
50 50 H 0.97000 * 119.99613 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 16 2.1346 1.7103 0.0000
4 6 3.9370 1.5060 -0.0008
5 1 4.2320 0.8792 0.8408
6 6 4.3746 0.8430 -1.3084
7 6 5.8948 0.6701 -1.3088
8 6 6.5640 2.0402 -1.1828
9 6 6.1263 2.7032 0.1249
10 6 4.6062 2.8761 0.1252
11 1 4.2945 3.3489 1.0566
12 7 4.2103 3.7187 -1.0059
13 6 4.2281 5.0610 -0.8850
14 8 4.5769 5.5716 0.1591
15 6 3.8183 5.9206 -2.0369
16 8 3.4700 5.4099 -3.0812
17 7 3.8366 7.2628 -1.9162
18 6 3.4343 8.1052 -3.0451
19 6 3.5449 9.5784 -2.6469
20 6 3.1254 10.4583 -3.8262
21 6 3.2350 11.9093 -3.4341
22 1 3.5699 12.1771 -2.4429
23 6 2.9067 12.8950 -4.3407
24 7 2.4984 12.5689 -5.5475
25 14 3.0418 14.6936 -3.8545
26 1 3.5205 14.7927 -2.4523
27 1 4.0027 15.3790 -4.7557
28 1 1.7092 15.3388 -3.9690
29 1 -0.3633 0.5138 -0.8899
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3634 0.5138 0.8900
32 1 1.8934 -0.5138 -0.8900
33 1 1.8934 -0.5138 0.8899
34 1 3.8982 -0.1333 -1.3979
35 1 4.0796 1.4698 -2.1500
36 1 6.1894 0.0431 -0.4672
37 1 6.2066 0.1982 -2.2405
38 1 7.6470 1.9170 -1.1826
39 1 6.2694 2.6672 -2.0244
40 1 6.6034 3.6791 0.2148
41 1 6.4209 2.0762 0.9664
42 1 3.9314 3.3107 -1.8406
43 1 4.1154 7.6709 -1.0815
44 1 4.0868 7.9086 -3.8959
45 1 2.4035 7.8795 -3.3179
46 1 2.8922 9.7749 -1.7963
47 1 4.5756 9.8046 -2.3739
48 1 3.7785 10.2619 -4.6765
49 1 2.0948 10.2323 -4.0997
50 1 2.2678 13.2624 -6.1853
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000343316005.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:41:36
Heat of formation + Delta-G solvation = -108.181208 kcal
Electronic energy + Delta-G solvation = -27428.387421 eV
Core-core repulsion = 23580.342371 eV
Total energy + Delta-G solvation = -3848.045050 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-40.89721 -39.34185 -37.94322 -35.65476 -34.12350 -33.29025 -33.16333 -31.45242
-31.21706 -30.33687 -27.20236 -24.99134 -24.09361 -23.26515 -22.91319 -22.44243
-20.80708 -20.38636 -19.51065 -18.47491 -16.92370 -16.79084 -16.35601 -16.17774
-15.76134 -15.67788 -15.33813 -15.21737 -14.95672 -14.68997 -14.42075 -14.35363
-13.87917 -13.58823 -13.55373 -13.23323 -12.95473 -12.76622 -12.62234 -12.30294
-12.15378 -11.98679 -11.86373 -11.76809 -11.72402 -11.59833 -11.07448 -11.01207
-10.91873 -10.73936 -10.68064 -10.56790 -10.15152 -9.88449 -9.74822 -9.42300
-9.34332 -9.10152 -8.93534 -8.37042 -8.05516 -6.01605 -4.04371 1.17138
1.47921 2.12996 2.37297 3.28303 3.31115 3.38648 3.42679 3.68472
3.95554 4.12501 4.41441 4.45037 4.45281 4.52652 4.53760 4.56620
4.64147 4.80181 4.85578 4.92147 5.04454 5.10424 5.25764 5.31585
5.34445 5.35277 5.45755 5.52425 5.58275 5.62643 5.66655 5.69860
5.72216 5.79011 5.89641 6.07103 6.11000 6.31440 6.56748 6.72524
6.96517 6.97495 7.45233 7.63606 7.75213 7.77384 7.97132 8.10398
8.38481 9.02427 9.59932 11.09712
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.017558 B = 0.001887 C = 0.001793
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1594.339033 B =14834.186960 C =15609.390114
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.093 4.093
3 S -0.243 6.243
4 C -0.065 4.065
5 H 0.102 0.898
6 C -0.118 4.118
7 C -0.117 4.117
8 C -0.123 4.123
9 C -0.127 4.127
10 C 0.167 3.833
11 H 0.101 0.899
12 N -0.692 5.692
13 C 0.512 3.488
14 O -0.521 6.521
15 C 0.500 3.500
16 O -0.525 6.525
17 N -0.692 5.692
18 C 0.114 3.886
19 C -0.123 4.123
20 C 0.024 3.976
21 C -0.521 4.521
22 H 0.057 0.943
23 C 0.056 3.944
24 N -0.894 5.894
25 Si 0.893 3.107
26 H -0.273 1.273
27 H -0.284 1.284
28 H -0.284 1.284
29 H 0.066 0.934
30 H 0.070 0.930
31 H 0.064 0.936
32 H 0.081 0.919
33 H 0.079 0.921
34 H 0.068 0.932
35 H 0.077 0.923
36 H 0.064 0.936
37 H 0.069 0.931
38 H 0.067 0.933
39 H 0.067 0.933
40 H 0.078 0.922
41 H 0.076 0.924
42 H 0.414 0.586
43 H 0.411 0.589
44 H 0.070 0.930
45 H 0.071 0.929
46 H 0.057 0.943
47 H 0.057 0.943
48 H 0.020 0.980
49 H 0.020 0.980
50 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.257 -31.375 12.522 34.049
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.242 4.242
3 S -0.014 6.014
4 C -0.194 4.194
5 H 0.121 0.879
6 C -0.157 4.157
7 C -0.156 4.156
8 C -0.161 4.161
9 C -0.167 4.167
10 C 0.061 3.939
11 H 0.119 0.881
12 N -0.347 5.347
13 C 0.293 3.707
14 O -0.396 6.396
15 C 0.280 3.720
16 O -0.402 6.402
17 N -0.343 5.343
18 C -0.008 4.008
19 C -0.161 4.161
20 C -0.014 4.014
21 C -0.560 4.560
22 H 0.075 0.925
23 C -0.145 4.145
24 N -0.533 5.533
25 Si 0.721 3.279
26 H -0.197 1.197
27 H -0.210 1.210
28 H -0.210 1.210
29 H 0.085 0.915
30 H 0.089 0.911
31 H 0.084 0.916
32 H 0.100 0.900
33 H 0.097 0.903
34 H 0.087 0.913
35 H 0.095 0.905
36 H 0.083 0.917
37 H 0.088 0.912
38 H 0.086 0.914
39 H 0.086 0.914
40 H 0.097 0.903
41 H 0.095 0.905
42 H 0.252 0.748
43 H 0.247 0.753
44 H 0.089 0.911
45 H 0.089 0.911
46 H 0.076 0.924
47 H 0.075 0.925
48 H 0.038 0.962
49 H 0.038 0.962
50 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges 3.535 -30.343 12.368 32.957
hybrid contribution 0.702 -0.144 0.184 0.740
sum 4.238 -30.487 12.553 33.242
Atomic orbital electron populations
1.21510 0.92118 1.02539 1.03449 1.23348 1.00387 0.95681 1.04739
1.87383 1.04104 1.12050 1.97865 1.23543 0.93923 0.99764 1.02210
0.87938 1.21918 0.96683 1.00912 0.96224 1.21577 0.94127 0.97530
1.02346 1.21558 1.00379 0.96141 0.98007 1.21952 0.93907 1.02241
0.98571 1.20751 0.94223 0.87906 0.90996 0.88075 1.45806 1.66537
1.05152 1.17220 1.20324 0.78559 0.83385 0.88473 1.90752 1.46115
1.73643 1.29097 1.19998 0.80094 0.83921 0.87995 1.90759 1.46746
1.73649 1.29028 1.46055 1.64903 1.05005 1.18381 1.21834 1.00617
0.90819 0.87529 1.21926 1.01376 0.90958 1.01795 1.19039 0.96987
0.93384 0.91962 1.21244 1.44639 0.91111 0.98971 0.92509 1.25036
0.95254 0.99245 0.94999 1.69976 1.45224 1.33041 1.05062 0.86517
0.77677 0.85093 0.78599 1.19723 1.21013 1.21011 0.91487 0.91124
0.91646 0.90048 0.90273 0.91308 0.90479 0.91727 0.91245 0.91382
0.91400 0.90347 0.90532 0.74808 0.75350 0.91133 0.91116 0.92429
0.92452 0.96201 0.96185 0.92991
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -0.78 9.92 37.16 0.37 -0.41 16
2 C -0.09 -0.55 6.36 37.16 0.24 -0.31 16
3 S -0.24 -2.09 20.74 -107.50 -2.23 -4.32 16
4 C -0.07 -0.43 2.43 -26.73 -0.06 -0.49 16
5 H 0.10 0.55 8.14 -51.92 -0.42 0.12 16
6 C -0.12 -0.66 4.94 -26.73 -0.13 -0.80 16
7 C -0.12 -0.58 5.92 -26.73 -0.16 -0.74 16
8 C -0.12 -0.78 5.77 -26.73 -0.15 -0.93 16
9 C -0.13 -0.90 5.61 -26.73 -0.15 -1.05 16
10 C 0.17 1.40 2.23 -67.93 -0.15 1.25 16
11 H 0.10 1.01 7.57 -51.93 -0.39 0.61 16
12 N -0.69 -7.24 3.76 -54.24 -0.20 -7.44 16
13 C 0.51 6.85 7.86 -11.58 -0.09 6.76 16
14 O -0.52 -7.79 16.14 5.49 0.09 -7.70 16
15 C 0.50 7.69 7.89 -11.58 -0.09 7.59 16
16 O -0.53 -9.12 16.48 5.49 0.09 -9.03 16
17 N -0.69 -10.64 5.55 -60.73 -0.34 -10.98 16
18 C 0.11 2.00 5.67 -4.04 -0.02 1.97 16
19 C -0.12 -2.42 5.27 -26.73 -0.14 -2.56 16
20 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16
21 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16
22 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16
23 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16
24 N -0.89 -26.81 13.29 55.43 0.74 -26.08 16
25 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16
26 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16
27 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16
28 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16
29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16
30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16
31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
32 H 0.08 0.41 7.14 -51.92 -0.37 0.04 16
33 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16
34 H 0.07 0.33 6.92 -51.93 -0.36 -0.03 16
35 H 0.08 0.52 6.51 -51.93 -0.34 0.19 16
36 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16
37 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16
38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16
39 H 0.07 0.53 7.60 -51.93 -0.39 0.13 16
40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16
41 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16
42 H 0.41 4.23 6.34 -40.82 -0.26 3.98 16
43 H 0.41 5.79 7.94 -40.82 -0.32 5.47 16
44 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16
45 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16
46 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16
47 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16
48 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16
49 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16
50 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16
LS Contribution 412.55 15.07 6.22 6.22
Total: -1.00 -32.02 412.55 -10.50 -42.52
By element:
Atomic # 1 Polarization: 11.62 SS G_CDS: -8.74 Total: 2.87 kcal
Atomic # 6 Polarization: -1.56 SS G_CDS: -1.10 Total: -2.66 kcal
Atomic # 7 Polarization: -44.69 SS G_CDS: 0.20 Total: -44.50 kcal
Atomic # 8 Polarization: -16.91 SS G_CDS: 0.18 Total: -16.73 kcal
Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal
Atomic # 16 Polarization: -2.09 SS G_CDS: -2.23 Total: -4.32 kcal
Total LS contribution 6.22 Total: 6.22 kcal
Total: -32.02 -10.50 -42.52 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000343316005.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -65.657 kcal
(2) G-P(sol) polarization free energy of solvation -32.020 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.677 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.505 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.524 kcal
(6) G-S(sol) free energy of system = (1) + (5) -108.181 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds