Wall clock time and date at job start Sat Apr 11 2020 06:41:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 S 1.81402 * 109.46783 * 2 1
4 4 C 1.81401 * 103.00130 * 180.02562 * 3 2 1
5 5 H 1.09003 * 109.46904 * 305.00219 * 4 3 2
6 6 C 1.52998 * 109.47137 * 64.99801 * 4 3 2
7 7 C 1.53006 * 109.47063 * 180.02562 * 6 4 3
8 8 C 1.52999 * 109.47148 * 300.00349 * 7 6 4
9 9 C 1.53004 * 109.47194 * 59.99641 * 8 7 6
10 10 C 1.52997 * 109.47278 * 300.00130 * 9 8 7
11 11 H 1.09004 * 109.46812 * 180.02562 * 10 9 8
12 12 N 1.46498 * 109.47036 * 300.00073 * 10 9 8
13 13 C 1.34777 * 119.99828 * 274.72131 * 12 10 9
14 14 O 1.21353 * 120.00267 * 0.28147 * 13 12 10
15 15 C 1.49454 * 120.00301 * 180.27890 * 13 12 10
16 16 O 1.21353 * 119.99427 * 359.97438 * 15 13 12
17 17 N 1.34777 * 120.00297 * 180.02562 * 15 13 12
18 18 C 1.46495 * 119.99663 * 180.02562 * 17 15 13
19 19 C 1.53004 * 109.46738 * 179.97438 * 18 17 15
20 20 C 1.53000 * 109.46988 * 179.97438 * 19 18 17
21 21 C 1.50701 * 109.46979 * 180.02562 * 20 19 18
22 22 H 1.07998 * 120.00149 * 359.97438 * 21 20 19
23 23 C 1.37882 * 119.99762 * 180.02562 * 21 20 19
24 24 N 1.31515 * 120.00097 * 359.97438 * 23 21 20
25 25 Si 1.86803 * 119.99835 * 179.97438 * 23 21 20
26 26 H 1.48499 * 109.47041 * 359.97438 * 25 23 21
27 27 H 1.48497 * 109.46896 * 119.99624 * 25 23 21
28 28 H 1.48496 * 109.47151 * 239.99581 * 25 23 21
29 29 H 1.08993 * 109.47223 * 60.00278 * 1 2 3
30 30 H 1.09002 * 109.46788 * 179.97438 * 1 2 3
31 31 H 1.08998 * 109.47508 * 299.99705 * 1 2 3
32 32 H 1.08998 * 109.47508 * 240.00295 * 2 1 3
33 33 H 1.08994 * 109.47742 * 119.99805 * 2 1 3
34 34 H 1.08997 * 109.47266 * 300.00458 * 6 4 3
35 35 H 1.09003 * 109.46883 * 60.00405 * 6 4 3
36 36 H 1.09003 * 109.47067 * 60.00362 * 7 6 4
37 37 H 1.08995 * 109.47185 * 180.02562 * 7 6 4
38 38 H 1.09000 * 109.47204 * 179.97438 * 8 7 6
39 39 H 1.09003 * 109.47147 * 299.99964 * 8 7 6
40 40 H 1.08997 * 109.47037 * 179.97438 * 9 8 7
41 41 H 1.09003 * 109.46809 * 60.00116 * 9 8 7
42 42 H 0.97001 * 120.00384 * 95.00578 * 12 10 9
43 43 H 0.97000 * 119.99736 * 359.97438 * 17 15 13
44 44 H 1.09007 * 109.47376 * 299.99203 * 18 17 15
45 45 H 1.08997 * 109.47774 * 59.99894 * 18 17 15
46 46 H 1.09006 * 109.47053 * 299.99454 * 19 18 17
47 47 H 1.08997 * 109.47419 * 59.99839 * 19 18 17
48 48 H 1.09007 * 109.47300 * 299.99413 * 20 19 18
49 49 H 1.08997 * 109.47600 * 59.99950 * 20 19 18
50 50 H 0.97000 * 119.99613 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 16 2.1346 1.7103 0.0000
4 6 3.9370 1.5060 -0.0008
5 1 4.2320 0.8792 0.8408
6 6 4.3746 0.8430 -1.3084
7 6 5.8948 0.6701 -1.3088
8 6 6.5640 2.0402 -1.1828
9 6 6.1263 2.7032 0.1249
10 6 4.6062 2.8761 0.1252
11 1 4.2945 3.3489 1.0566
12 7 4.2103 3.7187 -1.0059
13 6 4.2281 5.0610 -0.8850
14 8 4.5769 5.5716 0.1591
15 6 3.8183 5.9206 -2.0369
16 8 3.4700 5.4099 -3.0812
17 7 3.8366 7.2628 -1.9162
18 6 3.4343 8.1052 -3.0451
19 6 3.5449 9.5784 -2.6469
20 6 3.1254 10.4583 -3.8262
21 6 3.2350 11.9093 -3.4341
22 1 3.5699 12.1771 -2.4429
23 6 2.9067 12.8950 -4.3407
24 7 2.4984 12.5689 -5.5475
25 14 3.0418 14.6936 -3.8545
26 1 3.5205 14.7927 -2.4523
27 1 4.0027 15.3790 -4.7557
28 1 1.7092 15.3388 -3.9690
29 1 -0.3633 0.5138 -0.8899
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3634 0.5138 0.8900
32 1 1.8934 -0.5138 -0.8900
33 1 1.8934 -0.5138 0.8899
34 1 3.8982 -0.1333 -1.3979
35 1 4.0796 1.4698 -2.1500
36 1 6.1894 0.0431 -0.4672
37 1 6.2066 0.1982 -2.2405
38 1 7.6470 1.9170 -1.1826
39 1 6.2694 2.6672 -2.0244
40 1 6.6034 3.6791 0.2148
41 1 6.4209 2.0762 0.9664
42 1 3.9314 3.3107 -1.8406
43 1 4.1154 7.6709 -1.0815
44 1 4.0868 7.9086 -3.8959
45 1 2.4035 7.8795 -3.3179
46 1 2.8922 9.7749 -1.7963
47 1 4.5756 9.8046 -2.3739
48 1 3.7785 10.2619 -4.6765
49 1 2.0948 10.2323 -4.0997
50 1 2.2678 13.2624 -6.1853
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000343316005.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:41:35
Heat of formation + Delta-G solvation = -127.590488 kcal
Electronic energy + Delta-G solvation = -27429.229071 eV
Core-core repulsion = 23580.342371 eV
Total energy + Delta-G solvation = -3848.886699 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-41.93419 -40.32726 -38.93197 -37.16511 -35.38884 -34.76645 -33.65907 -33.04421
-31.97349 -31.02365 -28.95756 -26.35310 -24.84048 -24.24170 -23.73934 -23.18644
-22.37799 -21.62874 -20.22680 -19.67583 -18.51605 -17.87012 -17.54177 -17.24473
-16.75594 -16.52419 -16.42450 -16.32519 -16.04317 -15.71773 -15.42426 -15.27259
-15.05296 -14.64476 -14.29484 -14.14210 -13.89587 -13.78133 -13.55467 -13.51197
-13.33244 -13.13724 -12.86071 -12.78776 -12.62405 -12.55296 -12.45862 -12.37683
-12.18788 -11.71275 -11.57940 -11.55975 -11.53713 -11.22550 -11.21357 -10.76351
-10.67314 -10.55863 -10.33420 -10.24022 -8.70857 -8.19907 -6.30738 0.30069
0.62562 1.27314 1.41483 1.41930 1.55130 1.61291 2.10106 2.41263
2.59955 3.13936 3.34226 3.42205 3.60833 3.90581 4.01063 4.04248
4.07428 4.08338 4.11279 4.17081 4.30509 4.35642 4.43256 4.51526
4.52851 4.60032 4.82958 4.84583 4.85800 4.89177 4.90599 4.95019
5.00207 5.10583 5.14048 5.17085 5.21973 5.22425 5.24339 5.32771
5.44787 5.51285 5.70060 5.84036 5.87186 6.22407 6.30249 6.68091
6.86275 6.89742 7.38551 8.92237
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.017558 B = 0.001887 C = 0.001793
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1594.339033 B =14834.186960 C =15609.390114
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.077 4.077
3 S -0.315 6.315
4 C -0.046 4.046
5 H 0.124 0.876
6 C -0.115 4.115
7 C -0.110 4.110
8 C -0.122 4.122
9 C -0.122 4.122
10 C 0.163 3.837
11 H 0.086 0.914
12 N -0.677 5.677
13 C 0.516 3.484
14 O -0.539 6.539
15 C 0.500 3.500
16 O -0.547 6.547
17 N -0.686 5.686
18 C 0.128 3.872
19 C -0.106 4.106
20 C 0.025 3.975
21 C -0.541 4.541
22 H 0.064 0.936
23 C -0.003 4.003
24 N -0.933 5.933
25 Si 0.966 3.034
26 H -0.261 1.261
27 H -0.279 1.279
28 H -0.280 1.280
29 H 0.053 0.947
30 H 0.090 0.910
31 H 0.056 0.944
32 H 0.093 0.907
33 H 0.094 0.906
34 H 0.083 0.917
35 H 0.061 0.939
36 H 0.082 0.918
37 H 0.076 0.924
38 H 0.077 0.923
39 H 0.048 0.952
40 H 0.058 0.942
41 H 0.100 0.900
42 H 0.416 0.584
43 H 0.419 0.581
44 H 0.065 0.935
45 H 0.063 0.937
46 H 0.066 0.934
47 H 0.067 0.933
48 H -0.003 1.003
49 H -0.004 1.004
50 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.235 -33.039 14.091 36.298
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.225 4.225
3 S -0.086 6.086
4 C -0.175 4.175
5 H 0.142 0.858
6 C -0.154 4.154
7 C -0.149 4.149
8 C -0.160 4.160
9 C -0.161 4.161
10 C 0.059 3.941
11 H 0.104 0.896
12 N -0.330 5.330
13 C 0.296 3.704
14 O -0.416 6.416
15 C 0.281 3.719
16 O -0.425 6.425
17 N -0.339 5.339
18 C 0.005 3.995
19 C -0.143 4.143
20 C -0.013 4.013
21 C -0.579 4.579
22 H 0.082 0.918
23 C -0.201 4.201
24 N -0.573 5.573
25 Si 0.791 3.209
26 H -0.185 1.185
27 H -0.205 1.205
28 H -0.205 1.205
29 H 0.073 0.927
30 H 0.109 0.891
31 H 0.075 0.925
32 H 0.111 0.889
33 H 0.112 0.888
34 H 0.102 0.898
35 H 0.080 0.920
36 H 0.100 0.900
37 H 0.094 0.906
38 H 0.095 0.905
39 H 0.067 0.933
40 H 0.077 0.923
41 H 0.118 0.882
42 H 0.254 0.746
43 H 0.256 0.744
44 H 0.083 0.917
45 H 0.081 0.919
46 H 0.085 0.915
47 H 0.086 0.914
48 H 0.015 0.985
49 H 0.014 0.986
50 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges 4.524 -32.043 13.961 35.244
hybrid contribution 0.371 0.287 -0.319 0.568
sum 4.895 -31.756 13.642 34.907
Atomic orbital electron populations
1.21528 0.92219 1.03458 1.02417 1.23366 1.00123 0.93008 1.05980
1.87664 1.06942 1.15940 1.98042 1.23493 0.91620 0.98684 1.03660
0.85793 1.21908 0.97400 1.01183 0.94934 1.21550 0.93121 0.96739
1.03507 1.21553 1.01110 0.96668 0.96675 1.21922 0.92351 1.01830
1.00034 1.20939 0.95479 0.88424 0.89296 0.89624 1.45830 1.64994
1.04267 1.17941 1.19905 0.78895 0.84111 0.87452 1.90746 1.47463
1.74049 1.29333 1.20372 0.79354 0.83887 0.88330 1.90745 1.47687
1.74022 1.30070 1.45872 1.64853 1.05066 1.18069 1.21474 1.00141
0.89910 0.88019 1.21641 1.01922 0.91196 0.99584 1.18937 0.95136
0.93853 0.93363 1.21704 1.44366 0.92486 0.99345 0.91775 1.26001
0.94825 1.04322 0.94919 1.70107 1.46242 1.34706 1.06283 0.85377
0.77788 0.78983 0.78761 1.18453 1.20474 1.20534 0.92749 0.89093
0.92492 0.88875 0.88777 0.89807 0.91995 0.89951 0.90556 0.90481
0.93291 0.92326 0.88166 0.74576 0.74388 0.91674 0.91902 0.91540
0.91397 0.98478 0.98582 0.92781
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.40 9.92 71.98 0.71 -0.69 16
2 C -0.08 -0.75 6.36 71.98 0.46 -0.29 16
3 S -0.31 -5.21 20.74 -56.49 -1.17 -6.38 16
4 C -0.05 -0.52 2.43 30.59 0.07 -0.45 16
5 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16
6 C -0.11 -1.04 4.94 30.60 0.15 -0.89 16
7 C -0.11 -0.79 5.92 30.60 0.18 -0.60 16
8 C -0.12 -1.34 5.77 30.60 0.18 -1.16 16
9 C -0.12 -1.54 5.61 30.59 0.17 -1.37 16
10 C 0.16 2.60 2.23 44.99 0.10 2.70 16
11 H 0.09 1.68 7.57 -2.39 -0.02 1.66 16
12 N -0.68 -14.14 3.76 -443.86 -1.67 -15.81 16
13 C 0.52 13.93 7.86 87.27 0.69 14.62 16
14 O -0.54 -16.15 16.14 -3.26 -0.05 -16.21 16
15 C 0.50 15.52 7.89 87.27 0.69 16.21 16
16 O -0.55 -19.31 16.48 -3.26 -0.05 -19.37 16
17 N -0.69 -21.11 5.55 -464.40 -2.58 -23.69 16
18 C 0.13 4.52 5.67 86.38 0.49 5.01 16
19 C -0.11 -4.16 5.27 30.60 0.16 -4.00 16
20 C 0.02 1.29 4.97 29.85 0.15 1.44 16
21 C -0.54 -30.50 9.11 25.60 0.23 -30.27 16
22 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16
23 C 0.00 -0.17 5.46 84.66 0.46 0.29 16
24 N -0.93 -56.98 13.29 21.45 0.28 -56.70 16
25 Si 0.97 44.32 29.54 68.60 2.03 46.34 16
26 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16
27 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16
28 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16
29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16
30 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16
31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16
32 H 0.09 0.70 7.14 -2.39 -0.02 0.68 16
33 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16
34 H 0.08 0.55 6.92 -2.39 -0.02 0.54 16
35 H 0.06 0.77 6.51 -2.39 -0.02 0.76 16
36 H 0.08 0.35 8.14 -2.39 -0.02 0.34 16
37 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16
38 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16
39 H 0.05 0.72 7.60 -2.39 -0.02 0.71 16
40 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16
41 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16
42 H 0.42 8.57 6.34 -92.71 -0.59 7.98 16
43 H 0.42 11.62 7.94 -92.71 -0.74 10.88 16
44 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16
45 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16
46 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16
47 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16
48 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16
49 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16
50 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16
Total: -1.00 -69.95 412.55 1.29 -68.66
By element:
Atomic # 1 Polarization: 23.00 SS G_CDS: -0.39 Total: 22.60 kcal
Atomic # 6 Polarization: -4.36 SS G_CDS: 4.90 Total: 0.54 kcal
Atomic # 7 Polarization: -92.23 SS G_CDS: -3.96 Total: -96.19 kcal
Atomic # 8 Polarization: -35.47 SS G_CDS: -0.11 Total: -35.57 kcal
Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal
Atomic # 16 Polarization: -5.21 SS G_CDS: -1.17 Total: -6.38 kcal
Total: -69.95 1.29 -68.66 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000343316005.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -58.934 kcal
(2) G-P(sol) polarization free energy of solvation -69.946 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.880 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.290 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.656 kcal
(6) G-S(sol) free energy of system = (1) + (5) -127.590 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds