Wall clock time and date at job start Sat Apr 11 2020 06:39:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08997 * 109.46966 * 2 1
4 4 C 1.52997 * 109.47469 * 120.00571 * 2 1 3
5 5 N 1.46499 * 109.47555 * 175.00230 * 4 2 1
6 6 C 1.34777 * 120.00199 * 180.02562 * 5 4 2
7 7 O 1.21283 * 119.99750 * 359.97438 * 6 5 4
8 8 C 1.50702 * 119.99928 * 180.27479 * 6 5 4
9 9 C 1.52996 * 109.46842 * 299.72137 * 8 6 5
10 10 C 1.53000 * 109.47245 * 59.72201 * 8 6 5
11 11 C 1.52996 * 109.47159 * 179.72352 * 8 6 5
12 12 C 1.53003 * 117.49989 * 248.74843 * 11 8 6
13 13 C 1.52999 * 117.50065 * 180.08624 * 11 8 6
14 14 N 1.46504 * 109.47126 * 240.00450 * 2 1 3
15 15 C 1.46501 * 119.99949 * 299.99926 * 14 2 1
16 16 C 1.34772 * 120.00113 * 120.00023 * 14 2 1
17 17 O 1.21286 * 120.00155 * 359.97438 * 16 14 2
18 18 C 1.50700 * 120.00061 * 180.02562 * 16 14 2
19 19 S 1.81005 * 109.47174 * 179.97438 * 18 16 14
20 20 C 1.76197 * 100.00129 * 179.97438 * 19 18 16
21 21 H 1.08001 * 119.99882 * 359.97438 * 20 19 18
22 22 C 1.38794 * 120.00265 * 180.02562 * 20 19 18
23 23 N 1.31634 * 119.99762 * 359.97438 * 22 20 19
24 24 Si 1.86799 * 120.00157 * 180.02562 * 22 20 19
25 25 H 1.48500 * 109.47507 * 59.99727 * 24 22 20
26 26 H 1.48508 * 109.46934 * 179.97438 * 24 22 20
27 27 H 1.48500 * 109.46780 * 299.99389 * 24 22 20
28 28 H 1.09006 * 109.46848 * 179.97438 * 1 2 3
29 29 H 1.08998 * 109.47183 * 299.99400 * 1 2 3
30 30 H 1.08994 * 109.47107 * 59.99959 * 1 2 3
31 31 H 1.08998 * 109.47382 * 54.99791 * 4 2 1
32 32 H 1.09002 * 109.47216 * 295.00228 * 4 2 1
33 33 H 0.97000 * 119.99484 * 359.97438 * 5 4 2
34 34 H 1.09001 * 109.47551 * 59.99933 * 9 8 6
35 35 H 1.09003 * 109.46851 * 180.02562 * 9 8 6
36 36 H 1.09002 * 109.47575 * 299.99754 * 9 8 6
37 37 H 1.08996 * 109.46783 * 59.99559 * 10 8 6
38 38 H 1.08994 * 109.47175 * 180.02562 * 10 8 6
39 39 H 1.09001 * 109.46739 * 299.99817 * 10 8 6
40 40 H 1.09003 * 115.55126 * 34.40947 * 11 8 6
41 41 H 1.08999 * 117.49373 * 359.97438 * 12 11 8
42 42 H 1.08997 * 117.50100 * 145.01685 * 12 11 8
43 43 H 1.08998 * 117.49469 * 214.97685 * 13 11 8
44 44 H 1.09000 * 117.49851 * 359.97438 * 13 11 8
45 45 H 1.08993 * 109.47098 * 90.00020 * 15 14 2
46 46 H 1.09006 * 109.47037 * 210.00052 * 15 14 2
47 47 H 1.09002 * 109.46954 * 329.99795 * 15 14 2
48 48 H 1.09003 * 109.47085 * 299.99198 * 18 16 14
49 49 H 1.08996 * 109.47261 * 59.99546 * 18 16 14
50 50 H 0.97001 * 120.00045 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0401 -0.7213 1.2491
5 7 3.5001 -0.8264 1.1905
6 6 4.1731 -1.4293 2.1905
7 8 3.5700 -1.8844 3.1392
8 6 5.6755 -1.5319 2.1331
9 6 6.0855 -2.3229 0.8893
10 6 6.2804 -0.1281 2.0671
11 6 6.1859 -2.2489 3.3846
12 6 6.9824 -1.4228 4.3967
13 6 7.6968 -2.4513 3.5161
14 7 2.0183 -0.6905 -1.1963
15 6 1.6644 -2.0931 -1.4282
16 6 2.7932 -0.0355 -2.0834
17 8 3.0858 1.1258 -1.8916
18 6 3.2950 -0.7457 -3.3142
19 16 4.3001 0.3922 -4.2997
20 6 4.7429 -0.6686 -5.6350
21 1 4.3930 -1.6902 -5.6519
22 6 5.5422 -0.1917 -6.6646
23 7 5.9691 1.0534 -6.6437
24 14 6.0110 -1.3162 -8.0806
25 1 4.7813 -1.7847 -8.7688
26 1 6.8629 -0.5717 -9.0427
27 1 6.7612 -2.4856 -7.5564
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3633 0.5137 0.8900
30 1 -0.3633 0.5138 -0.8899
31 1 1.6055 -1.7199 1.2950
32 1 1.7517 -0.1585 2.1369
33 1 3.9824 -0.4627 0.4315
34 1 5.7218 -1.8122 -0.0023
35 1 7.1721 -2.3975 0.8480
36 1 5.6546 -3.3230 0.9363
37 1 5.9882 0.4354 2.9532
38 1 7.3670 -0.2023 2.0252
39 1 5.9168 0.3826 1.1755
40 1 5.5372 -3.0332 3.7746
41 1 7.1431 -0.3687 4.1706
42 1 6.8580 -1.6640 5.4523
43 1 8.0420 -3.3686 3.9929
44 1 8.3271 -2.0740 2.7109
45 1 0.7376 -2.1443 -1.9995
46 1 2.4629 -2.5818 -1.9866
47 1 1.5296 -2.5968 -0.4710
48 1 3.9005 -1.6023 -3.0179
49 1 2.4471 -1.0878 -3.9074
50 1 6.5274 1.3868 -7.3634
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001756062653.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:39:17
Heat of formation + Delta-G solvation = -55.721982 kcal
Electronic energy + Delta-G solvation = -28738.799034 eV
Core-core repulsion = 24893.028787 eV
Total energy + Delta-G solvation = -3845.770247 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-40.65754 -39.73740 -37.85534 -36.47491 -34.41204 -33.25567 -32.47515 -31.82157
-28.80174 -27.66084 -26.92000 -26.59964 -25.53172 -24.52034 -22.40436 -21.91279
-21.27522 -19.39534 -18.68374 -17.78886 -17.35973 -17.01531 -16.47028 -15.89829
-15.65856 -15.26202 -15.08438 -14.84618 -14.68699 -14.21721 -14.04945 -13.53447
-13.39878 -13.19782 -13.08202 -12.88763 -12.82898 -12.55021 -12.43054 -12.38204
-12.32880 -12.20611 -12.10953 -11.83966 -11.72935 -11.28599 -11.15072 -11.07966
-11.07613 -10.94630 -10.80467 -10.52175 -10.18394 -9.86556 -9.71072 -9.47982
-9.15833 -9.10417 -8.67556 -8.29682 -6.56084 -6.26316 -3.97529 2.57241
2.78121 2.90883 3.04265 3.19981 3.22447 3.25755 3.52928 3.66691
4.15796 4.35294 4.46068 4.47898 4.68912 4.79388 4.84977 4.89214
4.99406 5.00462 5.04207 5.07727 5.09042 5.24266 5.32667 5.36691
5.41176 5.46139 5.47556 5.48889 5.52948 5.60576 5.63428 5.67885
5.68630 5.75819 5.80772 5.87933 5.94548 5.95845 5.99795 6.05194
6.06986 6.13402 6.30482 6.55617 7.38627 7.41883 7.54751 8.13424
8.30177 8.41901 9.19168 10.80938
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.010224 B = 0.003163 C = 0.002618
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2737.894070 B = 8849.827980 C =10693.990450
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.123 3.877
3 H 0.109 0.891
4 C 0.111 3.889
5 N -0.722 5.722
6 C 0.528 3.472
7 O -0.544 6.544
8 C -0.050 4.050
9 C -0.140 4.140
10 C -0.147 4.147
11 C -0.129 4.129
12 C -0.182 4.182
13 C -0.178 4.178
14 N -0.619 5.619
15 C 0.079 3.921
16 C 0.532 3.468
17 O -0.516 6.516
18 C -0.151 4.151
19 S -0.059 6.059
20 C -0.536 4.536
21 H 0.072 0.928
22 C 0.075 3.925
23 N -0.867 5.867
24 Si 0.918 3.082
25 H -0.274 1.274
26 H -0.283 1.283
27 H -0.274 1.274
28 H 0.060 0.940
29 H 0.069 0.931
30 H 0.067 0.933
31 H 0.070 0.930
32 H 0.077 0.923
33 H 0.405 0.595
34 H 0.064 0.936
35 H 0.071 0.929
36 H 0.060 0.940
37 H 0.064 0.936
38 H 0.070 0.930
39 H 0.065 0.935
40 H 0.113 0.887
41 H 0.100 0.900
42 H 0.091 0.909
43 H 0.093 0.907
44 H 0.096 0.904
45 H 0.056 0.944
46 H 0.075 0.925
47 H 0.068 0.932
48 H 0.089 0.911
49 H 0.089 0.911
50 H 0.269 0.731
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.490 -6.997 18.271 20.073
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C 0.019 3.981
3 H 0.127 0.873
4 C -0.014 4.014
5 N -0.375 5.375
6 C 0.314 3.686
7 O -0.421 6.421
8 C -0.054 4.054
9 C -0.197 4.197
10 C -0.204 4.204
11 C -0.147 4.147
12 C -0.219 4.219
13 C -0.214 4.214
14 N -0.355 5.355
15 C -0.065 4.065
16 C 0.320 3.680
17 O -0.390 6.390
18 C -0.302 4.302
19 S 0.167 5.833
20 C -0.685 4.685
21 H 0.090 0.910
22 C -0.135 4.135
23 N -0.502 5.502
24 Si 0.744 3.256
25 H -0.199 1.199
26 H -0.208 1.208
27 H -0.199 1.199
28 H 0.079 0.921
29 H 0.088 0.912
30 H 0.086 0.914
31 H 0.088 0.912
32 H 0.095 0.905
33 H 0.241 0.759
34 H 0.083 0.917
35 H 0.090 0.910
36 H 0.080 0.920
37 H 0.083 0.917
38 H 0.089 0.911
39 H 0.084 0.916
40 H 0.131 0.869
41 H 0.118 0.882
42 H 0.110 0.890
43 H 0.112 0.888
44 H 0.114 0.886
45 H 0.074 0.926
46 H 0.094 0.906
47 H 0.087 0.913
48 H 0.107 0.893
49 H 0.108 0.892
50 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -4.399 -5.451 19.131 20.373
hybrid contribution 0.054 -2.028 -1.566 2.563
sum -4.345 -7.479 17.565 19.579
Atomic orbital electron populations
1.22038 0.93792 1.02648 1.03004 1.21294 0.94891 0.98555 0.83368
0.87296 1.21728 0.80508 1.01270 0.97888 1.45956 1.07534 1.59872
1.24092 1.20446 0.89552 0.76886 0.81713 1.90659 1.70252 1.47888
1.33289 1.20247 0.91345 0.97354 0.96416 1.21849 1.02667 0.99964
0.95232 1.22018 1.01658 0.94014 1.02724 1.22026 0.93809 1.02490
0.96389 1.23142 1.04387 0.97733 0.96654 1.22995 0.94448 1.01050
1.02951 1.47952 1.52184 1.12616 1.22778 1.21750 1.01297 0.81534
1.01892 1.20432 0.77128 0.86815 0.83630 1.90707 1.56369 1.16350
1.75558 1.23571 1.04435 1.04653 0.97504 1.85379 1.60868 1.15248
1.21772 1.22806 1.37436 0.99660 1.08561 0.91018 1.24977 0.95060
0.95522 0.97896 1.70002 1.33086 1.14332 1.32820 0.86243 0.78580
0.80048 0.80754 1.19939 1.20793 1.19909 0.92069 0.91230 0.91439
0.91210 0.90517 0.75903 0.91709 0.91039 0.92045 0.91724 0.91066
0.91562 0.86881 0.88178 0.89046 0.88848 0.88587 0.92573 0.90615
0.91317 0.89269 0.89231 0.92098
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.34 9.19 37.16 0.34 -1.00 16
2 C 0.12 1.32 2.80 -67.93 -0.19 1.13 16
3 H 0.11 1.39 6.90 -51.93 -0.36 1.03 16
4 C 0.11 1.15 4.92 -4.04 -0.02 1.13 16
5 N -0.72 -8.34 5.17 -60.29 -0.31 -8.65 16
6 C 0.53 6.63 6.48 -10.98 -0.07 6.56 16
7 O -0.54 -8.37 15.65 5.55 0.09 -8.29 16
8 C -0.05 -0.53 0.72 -155.66 -0.11 -0.65 16
9 C -0.14 -1.41 8.21 37.16 0.31 -1.11 16
10 C -0.15 -1.45 6.96 37.16 0.26 -1.19 16
11 C -0.13 -1.33 4.75 -90.62 -0.43 -1.76 16
12 C -0.18 -1.65 9.57 -26.69 -0.26 -1.91 16
13 C -0.18 -1.51 9.39 -26.69 -0.25 -1.76 16
14 N -0.62 -7.62 2.24 -173.93 -0.39 -8.01 16
15 C 0.08 0.76 9.30 59.85 0.56 1.32 16
16 C 0.53 9.03 7.40 -10.99 -0.08 8.94 16
17 O -0.52 -10.56 15.19 5.55 0.08 -10.48 16
18 C -0.15 -2.85 4.71 36.01 0.17 -2.68 16
19 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16
20 C -0.54 -14.74 9.50 30.94 0.29 -14.45 16
21 H 0.07 1.86 7.80 -52.49 -0.41 1.45 16
22 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16
23 N -0.87 -25.47 13.22 55.49 0.73 -24.74 16
24 Si 0.92 20.86 29.55 -169.99 -5.02 15.84 16
25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16
26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16
27 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16
28 H 0.06 0.46 7.67 -51.93 -0.40 0.06 16
29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
31 H 0.07 0.71 6.88 -51.93 -0.36 0.35 16
32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16
33 H 0.41 4.95 6.70 -40.82 -0.27 4.68 16
34 H 0.06 0.70 7.57 -51.93 -0.39 0.31 16
35 H 0.07 0.66 7.29 -51.93 -0.38 0.28 16
36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16
37 H 0.06 0.63 6.97 -51.93 -0.36 0.27 16
38 H 0.07 0.62 7.07 -51.93 -0.37 0.26 16
39 H 0.07 0.70 7.56 -51.93 -0.39 0.30 16
40 H 0.11 1.33 7.47 -51.93 -0.39 0.94 16
41 H 0.10 0.86 5.85 -51.93 -0.30 0.56 16
42 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16
43 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16
44 H 0.10 0.77 7.07 -51.93 -0.37 0.40 16
45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
46 H 0.08 0.75 6.44 -51.93 -0.33 0.42 16
47 H 0.07 0.57 6.53 -51.93 -0.34 0.23 16
48 H 0.09 1.54 7.40 -51.92 -0.38 1.16 16
49 H 0.09 1.60 8.11 -51.92 -0.42 1.18 16
50 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16
LS Contribution 408.92 15.07 6.16 6.16
Total: -1.00 -33.36 408.92 -8.77 -42.13
By element:
Atomic # 1 Polarization: 13.52 SS G_CDS: -8.32 Total: 5.19 kcal
Atomic # 6 Polarization: -5.84 SS G_CDS: 0.42 Total: -5.42 kcal
Atomic # 7 Polarization: -41.43 SS G_CDS: 0.03 Total: -41.40 kcal
Atomic # 8 Polarization: -18.93 SS G_CDS: 0.17 Total: -18.76 kcal
Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal
Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal
Total LS contribution 6.16 Total: 6.16 kcal
Total: -33.36 -8.77 -42.13 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001756062653.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -13.590 kcal
(2) G-P(sol) polarization free energy of solvation -33.357 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.948 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.132 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.722 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds