Wall clock time and date at job start Sat Apr 11 2020 06:39:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08997 * 109.46966 * 2 1
4 4 C 1.52997 * 109.47469 * 120.00571 * 2 1 3
5 5 N 1.46499 * 109.47555 * 175.00230 * 4 2 1
6 6 C 1.34777 * 120.00199 * 180.02562 * 5 4 2
7 7 O 1.21283 * 119.99750 * 359.97438 * 6 5 4
8 8 C 1.50702 * 119.99928 * 180.27479 * 6 5 4
9 9 C 1.52996 * 109.46842 * 299.72137 * 8 6 5
10 10 C 1.53000 * 109.47245 * 59.72201 * 8 6 5
11 11 C 1.52996 * 109.47159 * 179.72352 * 8 6 5
12 12 C 1.53003 * 117.49989 * 248.74843 * 11 8 6
13 13 C 1.52999 * 117.50065 * 180.08624 * 11 8 6
14 14 N 1.46504 * 109.47126 * 240.00450 * 2 1 3
15 15 C 1.46501 * 119.99949 * 299.99926 * 14 2 1
16 16 C 1.34772 * 120.00113 * 120.00023 * 14 2 1
17 17 O 1.21286 * 120.00155 * 359.97438 * 16 14 2
18 18 C 1.50700 * 120.00061 * 180.02562 * 16 14 2
19 19 S 1.81005 * 109.47174 * 179.97438 * 18 16 14
20 20 C 1.76197 * 100.00129 * 179.97438 * 19 18 16
21 21 H 1.08001 * 119.99882 * 359.97438 * 20 19 18
22 22 C 1.38794 * 120.00265 * 180.02562 * 20 19 18
23 23 N 1.31634 * 119.99762 * 359.97438 * 22 20 19
24 24 Si 1.86799 * 120.00157 * 180.02562 * 22 20 19
25 25 H 1.48500 * 109.47507 * 59.99727 * 24 22 20
26 26 H 1.48508 * 109.46934 * 179.97438 * 24 22 20
27 27 H 1.48500 * 109.46780 * 299.99389 * 24 22 20
28 28 H 1.09006 * 109.46848 * 179.97438 * 1 2 3
29 29 H 1.08998 * 109.47183 * 299.99400 * 1 2 3
30 30 H 1.08994 * 109.47107 * 59.99959 * 1 2 3
31 31 H 1.08998 * 109.47382 * 54.99791 * 4 2 1
32 32 H 1.09002 * 109.47216 * 295.00228 * 4 2 1
33 33 H 0.97000 * 119.99484 * 359.97438 * 5 4 2
34 34 H 1.09001 * 109.47551 * 59.99933 * 9 8 6
35 35 H 1.09003 * 109.46851 * 180.02562 * 9 8 6
36 36 H 1.09002 * 109.47575 * 299.99754 * 9 8 6
37 37 H 1.08996 * 109.46783 * 59.99559 * 10 8 6
38 38 H 1.08994 * 109.47175 * 180.02562 * 10 8 6
39 39 H 1.09001 * 109.46739 * 299.99817 * 10 8 6
40 40 H 1.09003 * 115.55126 * 34.40947 * 11 8 6
41 41 H 1.08999 * 117.49373 * 359.97438 * 12 11 8
42 42 H 1.08997 * 117.50100 * 145.01685 * 12 11 8
43 43 H 1.08998 * 117.49469 * 214.97685 * 13 11 8
44 44 H 1.09000 * 117.49851 * 359.97438 * 13 11 8
45 45 H 1.08993 * 109.47098 * 90.00020 * 15 14 2
46 46 H 1.09006 * 109.47037 * 210.00052 * 15 14 2
47 47 H 1.09002 * 109.46954 * 329.99795 * 15 14 2
48 48 H 1.09003 * 109.47085 * 299.99198 * 18 16 14
49 49 H 1.08996 * 109.47261 * 59.99546 * 18 16 14
50 50 H 0.97001 * 120.00045 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0401 -0.7213 1.2491
5 7 3.5001 -0.8264 1.1905
6 6 4.1731 -1.4293 2.1905
7 8 3.5700 -1.8844 3.1392
8 6 5.6755 -1.5319 2.1331
9 6 6.0855 -2.3229 0.8893
10 6 6.2804 -0.1281 2.0671
11 6 6.1859 -2.2489 3.3846
12 6 6.9824 -1.4228 4.3967
13 6 7.6968 -2.4513 3.5161
14 7 2.0183 -0.6905 -1.1963
15 6 1.6644 -2.0931 -1.4282
16 6 2.7932 -0.0355 -2.0834
17 8 3.0858 1.1258 -1.8916
18 6 3.2950 -0.7457 -3.3142
19 16 4.3001 0.3922 -4.2997
20 6 4.7429 -0.6686 -5.6350
21 1 4.3930 -1.6902 -5.6519
22 6 5.5422 -0.1917 -6.6646
23 7 5.9691 1.0534 -6.6437
24 14 6.0110 -1.3162 -8.0806
25 1 4.7813 -1.7847 -8.7688
26 1 6.8629 -0.5717 -9.0427
27 1 6.7612 -2.4856 -7.5564
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3633 0.5137 0.8900
30 1 -0.3633 0.5138 -0.8899
31 1 1.6055 -1.7199 1.2950
32 1 1.7517 -0.1585 2.1369
33 1 3.9824 -0.4627 0.4315
34 1 5.7218 -1.8122 -0.0023
35 1 7.1721 -2.3975 0.8480
36 1 5.6546 -3.3230 0.9363
37 1 5.9882 0.4354 2.9532
38 1 7.3670 -0.2023 2.0252
39 1 5.9168 0.3826 1.1755
40 1 5.5372 -3.0332 3.7746
41 1 7.1431 -0.3687 4.1706
42 1 6.8580 -1.6640 5.4523
43 1 8.0420 -3.3686 3.9929
44 1 8.3271 -2.0740 2.7109
45 1 0.7376 -2.1443 -1.9995
46 1 2.4629 -2.5818 -1.9866
47 1 1.5296 -2.5968 -0.4710
48 1 3.9005 -1.6023 -3.0179
49 1 2.4471 -1.0878 -3.9074
50 1 6.5274 1.3868 -7.3634
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001756062653.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:39:16
Heat of formation + Delta-G solvation = -75.993516 kcal
Electronic energy + Delta-G solvation = -28739.678074 eV
Core-core repulsion = 24893.028787 eV
Total energy + Delta-G solvation = -3846.649287 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 1.08 seconds
Orbital eigenvalues (eV)
-41.63788 -40.89059 -38.75343 -37.60929 -35.44525 -34.56390 -34.14307 -32.79167
-30.18547 -28.47228 -27.84694 -27.63433 -27.44704 -25.34667 -23.10335 -22.96030
-22.19764 -20.55313 -19.70477 -19.50374 -18.31942 -18.22295 -17.44852 -16.97902
-16.85539 -16.79978 -16.33109 -16.12138 -15.84575 -15.52820 -14.93272 -14.67847
-14.55755 -14.50780 -14.09324 -13.97059 -13.70231 -13.60817 -13.43045 -13.28990
-13.22554 -13.14510 -13.13479 -13.02504 -12.87169 -12.80538 -12.59860 -12.49911
-12.02550 -11.99309 -11.77042 -11.70762 -11.27092 -11.11234 -10.96510 -10.87063
-10.66704 -10.24169 -10.13611 -9.74541 -8.63556 -8.32861 -6.09917 1.26749
1.44302 1.46556 1.55271 1.56162 1.58702 2.00859 2.18995 2.29280
2.92344 3.01478 3.27809 3.54802 3.55821 3.61201 3.81050 3.92566
4.03162 4.06950 4.13234 4.15172 4.24085 4.27533 4.28851 4.44884
4.49659 4.55630 4.62370 4.63981 4.69322 4.75186 4.77177 4.80814
4.85804 4.91987 4.92187 4.99977 5.02886 5.18064 5.22320 5.24302
5.29048 5.32439 5.38953 5.43605 5.56902 6.20922 6.24027 6.41389
7.08986 7.12774 7.14491 8.75702
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.010224 B = 0.003163 C = 0.002618
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2737.894070 B = 8849.827980 C =10693.990450
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.126 3.874
3 H 0.086 0.914
4 C 0.114 3.886
5 N -0.720 5.720
6 C 0.526 3.474
7 O -0.574 6.574
8 C -0.047 4.047
9 C -0.136 4.136
10 C -0.144 4.144
11 C -0.144 4.144
12 C -0.183 4.183
13 C -0.163 4.163
14 N -0.603 5.603
15 C 0.070 3.930
16 C 0.534 3.466
17 O -0.559 6.559
18 C -0.126 4.126
19 S -0.143 6.143
20 C -0.546 4.546
21 H 0.081 0.919
22 C 0.016 3.984
23 N -0.910 5.910
24 Si 0.993 3.007
25 H -0.264 1.264
26 H -0.280 1.280
27 H -0.262 1.262
28 H 0.079 0.921
29 H 0.087 0.913
30 H 0.056 0.944
31 H 0.080 0.920
32 H 0.081 0.919
33 H 0.402 0.598
34 H 0.054 0.946
35 H 0.082 0.918
36 H 0.060 0.940
37 H 0.064 0.936
38 H 0.084 0.916
39 H 0.055 0.945
40 H 0.096 0.904
41 H 0.104 0.896
42 H 0.095 0.905
43 H 0.103 0.897
44 H 0.103 0.897
45 H 0.074 0.926
46 H 0.075 0.925
47 H 0.089 0.911
48 H 0.108 0.892
49 H 0.103 0.897
50 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.963 -9.211 18.608 21.347
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C 0.023 3.977
3 H 0.104 0.896
4 C -0.010 4.010
5 N -0.371 5.371
6 C 0.313 3.687
7 O -0.453 6.453
8 C -0.050 4.050
9 C -0.194 4.194
10 C -0.201 4.201
11 C -0.163 4.163
12 C -0.220 4.220
13 C -0.200 4.200
14 N -0.337 5.337
15 C -0.072 4.072
16 C 0.322 3.678
17 O -0.437 6.437
18 C -0.277 4.277
19 S 0.084 5.916
20 C -0.694 4.694
21 H 0.099 0.901
22 C -0.189 4.189
23 N -0.546 5.546
24 Si 0.815 3.185
25 H -0.188 1.188
26 H -0.205 1.205
27 H -0.186 1.186
28 H 0.098 0.902
29 H 0.105 0.895
30 H 0.075 0.925
31 H 0.099 0.901
32 H 0.099 0.901
33 H 0.238 0.762
34 H 0.073 0.927
35 H 0.101 0.899
36 H 0.080 0.920
37 H 0.083 0.917
38 H 0.103 0.897
39 H 0.074 0.926
40 H 0.114 0.886
41 H 0.122 0.878
42 H 0.113 0.887
43 H 0.122 0.878
44 H 0.122 0.878
45 H 0.092 0.908
46 H 0.094 0.906
47 H 0.108 0.892
48 H 0.126 0.874
49 H 0.121 0.879
50 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -4.911 -7.698 19.488 21.521
hybrid contribution 0.104 -1.369 -1.544 2.066
sum -4.807 -9.067 17.945 20.672
Atomic orbital electron populations
1.22004 0.91478 1.03948 1.03369 1.21373 0.96502 0.97212 0.82638
0.89568 1.21778 0.79835 1.01769 0.97613 1.46019 1.08120 1.59286
1.23678 1.20792 0.90375 0.76260 0.81231 1.90641 1.71000 1.49318
1.34375 1.20230 0.90050 0.97803 0.96890 1.21828 1.03361 0.99674
0.94501 1.22005 1.02439 0.93481 1.02198 1.21930 0.94780 1.02776
0.96766 1.23219 1.03926 0.98086 0.96776 1.23066 0.92996 1.01223
1.02713 1.47886 1.50279 1.13579 1.21966 1.22022 1.02082 0.79581
1.03481 1.20097 0.77701 0.86222 0.83793 1.90698 1.58358 1.18120
1.76512 1.23391 1.03737 1.03180 0.97391 1.85525 1.63167 1.19231
1.23654 1.23155 1.37385 1.00000 1.08856 0.90083 1.26050 0.94865
0.97063 1.00881 1.70166 1.34062 1.16504 1.33915 0.85079 0.78552
0.77951 0.76902 1.18846 1.20545 1.18606 0.90250 0.89463 0.92534
0.90142 0.90059 0.76250 0.92678 0.89920 0.92044 0.91720 0.89718
0.92586 0.88597 0.87776 0.88658 0.87813 0.87829 0.90791 0.90585
0.89241 0.87425 0.87855 0.92050
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.22 9.19 71.98 0.66 -1.56 16
2 C 0.13 2.56 2.80 44.99 0.13 2.69 16
3 H 0.09 2.22 6.90 -2.39 -0.02 2.20 16
4 C 0.11 2.20 4.92 86.38 0.42 2.62 16
5 N -0.72 -16.20 5.17 -463.06 -2.40 -18.60 16
6 C 0.53 12.99 6.48 87.66 0.57 13.55 16
7 O -0.57 -17.44 15.65 -3.04 -0.05 -17.49 16
8 C -0.05 -0.96 0.72 -52.93 -0.04 -1.00 16
9 C -0.14 -2.64 8.21 71.98 0.59 -2.05 16
10 C -0.14 -2.77 6.96 71.98 0.50 -2.27 16
11 C -0.14 -2.86 4.75 -10.79 -0.05 -2.91 16
12 C -0.18 -3.10 9.57 30.62 0.29 -2.81 16
13 C -0.16 -2.49 9.39 30.62 0.29 -2.20 16
14 N -0.60 -13.97 2.24 -822.59 -1.85 -15.82 16
15 C 0.07 1.16 9.30 127.77 1.19 2.35 16
16 C 0.53 18.00 7.40 87.66 0.65 18.65 16
17 O -0.56 -23.53 15.19 -3.05 -0.05 -23.58 16
18 C -0.13 -4.67 4.71 71.24 0.34 -4.34 16
19 S -0.14 -7.56 20.57 -56.49 -1.16 -8.72 16
20 C -0.55 -30.10 9.50 67.95 0.65 -29.45 16
21 H 0.08 4.14 7.80 -2.91 -0.02 4.12 16
22 C 0.02 0.91 5.49 84.86 0.47 1.37 16
23 N -0.91 -54.52 13.22 21.65 0.29 -54.24 16
24 Si 0.99 42.43 29.55 68.60 2.03 44.45 16
25 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16
26 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16
27 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16
28 H 0.08 0.91 7.67 -2.38 -0.02 0.89 16
29 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16
30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16
31 H 0.08 1.42 6.88 -2.39 -0.02 1.40 16
32 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16
33 H 0.40 9.80 6.70 -92.71 -0.62 9.18 16
34 H 0.05 1.16 7.57 -2.39 -0.02 1.15 16
35 H 0.08 1.40 7.29 -2.39 -0.02 1.39 16
36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16
37 H 0.06 1.23 6.97 -2.39 -0.02 1.21 16
38 H 0.08 1.38 7.07 -2.39 -0.02 1.37 16
39 H 0.06 1.19 7.56 -2.39 -0.02 1.17 16
40 H 0.10 2.25 7.47 -2.39 -0.02 2.23 16
41 H 0.10 1.66 5.85 -2.39 -0.01 1.65 16
42 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16
43 H 0.10 1.37 8.14 -2.39 -0.02 1.36 16
44 H 0.10 1.43 7.07 -2.39 -0.02 1.42 16
45 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16
46 H 0.08 1.29 6.44 -2.38 -0.02 1.28 16
47 H 0.09 1.16 6.53 -2.39 -0.02 1.14 16
48 H 0.11 3.58 7.40 -2.39 -0.02 3.56 16
49 H 0.10 3.55 8.11 -2.40 -0.02 3.53 16
50 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16
Total: -1.00 -74.26 408.92 3.78 -70.48
By element:
Atomic # 1 Polarization: 30.54 SS G_CDS: 0.31 Total: 30.85 kcal
Atomic # 6 Polarization: -13.99 SS G_CDS: 6.65 Total: -7.34 kcal
Atomic # 7 Polarization: -84.70 SS G_CDS: -3.96 Total: -88.65 kcal
Atomic # 8 Polarization: -40.98 SS G_CDS: -0.09 Total: -41.07 kcal
Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.45 kcal
Atomic # 16 Polarization: -7.56 SS G_CDS: -1.16 Total: -8.72 kcal
Total: -74.26 3.78 -70.48 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001756062653.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -5.513 kcal
(2) G-P(sol) polarization free energy of solvation -74.259 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.772 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.779 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.481 kcal
(6) G-S(sol) free energy of system = (1) + (5) -75.994 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.08 seconds