Wall clock time and date at job start Sat Apr 11 2020 06:39:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31614 * 1
3 3 Si 1.86803 * 119.99963 * 2 1
4 4 H 1.48497 * 109.47219 * 180.02562 * 3 2 1
5 5 H 1.48505 * 109.47003 * 299.99885 * 3 2 1
6 6 H 1.48496 * 109.47087 * 59.99485 * 3 2 1
7 7 C 1.38814 * 120.00154 * 179.97438 * 2 1 3
8 8 H 1.07997 * 119.99700 * 179.97438 * 7 2 1
9 9 N 1.36933 * 120.00104 * 0.02562 * 7 2 1
10 10 C 1.46496 * 120.00258 * 179.97438 * 9 7 2
11 11 H 1.09002 * 109.47021 * 34.99609 * 10 9 7
12 12 C 1.53005 * 109.47414 * 154.99497 * 10 9 7
13 13 C 1.52997 * 109.47452 * 180.02562 * 12 10 9
14 14 C 1.53002 * 109.46817 * 300.00239 * 13 12 10
15 15 H 1.08992 * 109.47063 * 299.99823 * 14 13 12
16 16 N 1.46499 * 109.46799 * 179.97438 * 14 13 12
17 17 C 1.34778 * 119.99771 * 85.00174 * 16 14 13
18 18 O 1.21279 * 120.00041 * 359.97438 * 17 16 14
19 19 C 1.50703 * 119.99935 * 179.97438 * 17 16 14
20 20 C 1.50699 * 109.47042 * 179.97438 * 19 17 16
21 21 C 1.34461 * 126.51628 * 264.68570 * 20 19 17
22 22 N 1.36667 * 109.96913 * 179.89556 * 21 20 19
23 23 H 0.97000 * 125.05158 * 180.16064 * 22 21 20
24 24 C 1.37549 * 109.89835 * 0.38202 * 22 21 20
25 25 C 1.38862 * 134.46800 * 179.77255 * 24 22 21
26 26 N 1.31737 * 120.27821 * 180.02562 * 25 24 22
27 27 C 1.32302 * 122.56782 * 359.97438 * 26 25 24
28 28 C 1.36639 * 121.32031 * 0.02562 * 27 26 25
29 29 C 1.39835 * 118.70245 * 0.02562 * 28 27 26
30 30 C 1.53000 * 109.47233 * 60.00194 * 14 13 12
31 31 C 1.52997 * 109.47060 * 299.99657 * 30 14 13
32 32 H 0.96996 * 120.00649 * 0.02562 * 1 2 3
33 33 H 0.97007 * 120.00049 * 359.97438 * 9 7 2
34 34 H 1.09002 * 109.46935 * 60.00059 * 12 10 9
35 35 H 1.09001 * 109.46812 * 300.00401 * 12 10 9
36 36 H 1.08993 * 109.47194 * 179.97438 * 13 12 10
37 37 H 1.09002 * 109.46695 * 59.99734 * 13 12 10
38 38 H 0.97006 * 120.00568 * 264.99947 * 16 14 13
39 39 H 1.08995 * 109.47091 * 300.00103 * 19 17 16
40 40 H 1.08999 * 109.47030 * 59.99811 * 19 17 16
41 41 H 1.08003 * 125.01422 * 0.02562 * 21 20 19
42 42 H 1.08007 * 119.86399 * 0.02562 * 25 24 22
43 43 H 1.08001 * 119.34165 * 180.02562 * 27 26 25
44 44 H 1.08004 * 120.64784 * 179.97438 * 28 27 26
45 45 H 1.09002 * 109.47398 * 59.99826 * 30 14 13
46 46 H 1.09001 * 109.47194 * 180.02562 * 30 14 13
47 47 H 1.08996 * 109.47853 * 180.02562 * 31 30 14
48 48 H 1.09002 * 109.47153 * 300.00319 * 31 30 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 3.7101 1.3465 -0.0006
5 1 1.8914 2.3965 -1.2126
6 1 1.8913 2.3965 1.2124
7 6 2.0102 -1.2021 0.0005
8 1 3.0902 -1.2021 0.0001
9 7 1.3256 -2.3881 0.0005
10 6 2.0581 -3.6567 0.0005
11 1 2.9688 -3.5505 0.5899
12 6 1.1810 -4.7522 0.6103
13 6 1.9462 -6.0770 0.6109
14 6 2.3105 -6.4561 -0.8260
15 1 1.4001 -6.5627 -1.4156
16 7 3.0438 -7.7244 -0.8253
17 6 2.3705 -8.8920 -0.8250
18 8 1.1577 -8.8927 -0.8248
19 6 3.1248 -10.1967 -0.8250
20 6 2.1461 -11.3426 -0.8240
21 6 1.7032 -12.0157 0.2525
22 7 0.8231 -12.9871 -0.1340
23 1 0.3701 -13.5995 0.4667
24 6 0.6786 -12.9707 -1.5017
25 6 -0.0616 -13.7151 -2.4107
26 7 0.0126 -13.4539 -3.6998
27 6 0.7773 -12.4912 -4.1885
28 6 1.5411 -11.7068 -3.3710
29 6 1.5043 -11.9379 -1.9923
30 6 3.1877 -5.3608 -1.4356
31 6 2.4225 -4.0359 -1.4362
32 1 -0.4851 0.8400 -0.0004
33 1 0.3556 -2.3881 0.0005
34 1 0.2702 -4.8584 0.0209
35 1 0.9218 -4.4822 1.6340
36 1 1.3215 -6.8572 1.0457
37 1 2.8568 -5.9703 1.2005
38 1 4.0138 -7.7239 -0.8252
39 1 3.7513 -10.2542 -1.7150
40 1 3.7516 -10.2539 0.0649
41 1 1.9979 -11.8165 1.2723
42 1 -0.7009 -14.5116 -2.0594
43 1 0.7983 -12.3219 -5.2549
44 1 2.1618 -10.9241 -3.7816
45 1 4.0983 -5.2542 -0.8460
46 1 3.4469 -5.6306 -2.4594
47 1 3.0471 -3.2556 -1.8710
48 1 1.5120 -4.1425 -2.0259
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001034715083.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:39:41
Heat of formation + Delta-G solvation = 27.540159 kcal
Electronic energy + Delta-G solvation = -28689.596566 eV
Core-core repulsion = 24744.285636 eV
Total energy + Delta-G solvation = -3945.310930 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-41.88942 -39.90192 -38.35889 -37.86186 -34.82218 -33.55486 -32.97837 -31.39839
-30.54856 -30.38520 -30.18761 -28.13727 -26.70445 -23.92233 -23.63999 -22.78540
-22.29582 -21.53535 -20.53893 -19.90916 -19.32521 -18.49924 -17.23236 -17.11047
-16.88872 -16.19262 -15.96937 -15.31466 -15.15677 -15.01112 -14.88112 -14.34839
-14.14944 -13.81167 -13.71588 -13.55849 -13.31443 -13.01930 -12.89364 -12.79724
-12.54581 -12.20524 -11.98247 -11.82652 -11.74137 -11.42372 -10.89624 -10.77140
-10.72345 -10.68772 -10.32080 -10.24267 -10.11829 -9.83887 -9.82778 -9.69955
-9.52080 -8.95941 -8.90157 -8.83929 -8.13553 -6.93133 -5.74645 -3.03188
0.69583 1.24021 2.22466 2.64588 2.68366 3.26537 3.43559 3.48812
3.51373 3.70870 4.21712 4.31631 4.42447 4.53541 4.60035 4.74781
4.78390 4.91019 5.00187 5.08895 5.13960 5.21460 5.30369 5.33097
5.34917 5.55245 5.60014 5.60955 5.67886 5.77306 5.86890 5.90131
5.94435 6.06278 6.19748 6.26078 6.30365 6.31745 6.33782 6.46774
6.60788 6.64058 6.67999 6.72087 6.99762 7.05784 7.14361 7.51826
7.71702 7.81655 8.25705 8.44120 9.54975 10.14363 10.48749 11.48181
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.025108 B = 0.001822 C = 0.001799
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1114.917109 B =15365.393729 C =15560.696833
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.933 5.933
2 C -0.016 4.016
3 Si 0.905 3.095
4 H -0.281 1.281
5 H -0.292 1.292
6 H -0.292 1.292
7 C -0.236 4.236
8 H 0.070 0.930
9 N -0.726 5.726
10 C 0.178 3.822
11 H 0.046 0.954
12 C -0.121 4.121
13 C -0.119 4.119
14 C 0.146 3.854
15 H 0.086 0.914
16 N -0.729 5.729
17 C 0.509 3.491
18 O -0.529 6.529
19 C -0.066 4.066
20 C -0.155 4.155
21 C 0.080 3.920
22 N -0.581 5.581
23 H 0.420 0.580
24 C 0.037 3.963
25 C 0.111 3.889
26 N -0.470 5.470
27 C 0.052 3.948
28 C -0.117 4.117
29 C -0.056 4.056
30 C -0.121 4.121
31 C -0.132 4.132
32 H 0.254 0.746
33 H 0.384 0.616
34 H 0.060 0.940
35 H 0.064 0.936
36 H 0.059 0.941
37 H 0.060 0.940
38 H 0.397 0.603
39 H 0.099 0.901
40 H 0.101 0.899
41 H 0.175 0.825
42 H 0.152 0.848
43 H 0.154 0.846
44 H 0.131 0.869
45 H 0.063 0.937
46 H 0.058 0.942
47 H 0.065 0.935
48 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.132 -29.967 -0.927 31.065
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.581 5.581
2 C -0.212 4.212
3 Si 0.737 3.263
4 H -0.206 1.206
5 H -0.219 1.219
6 H -0.219 1.219
7 C -0.367 4.367
8 H 0.088 0.912
9 N -0.366 5.366
10 C 0.068 3.932
11 H 0.064 0.936
12 C -0.160 4.160
13 C -0.158 4.158
14 C 0.042 3.958
15 H 0.104 0.896
16 N -0.380 5.380
17 C 0.294 3.706
18 O -0.404 6.404
19 C -0.106 4.106
20 C -0.162 4.162
21 C -0.049 4.049
22 N -0.184 5.184
23 H 0.257 0.743
24 C -0.072 4.072
25 C -0.057 4.057
26 N -0.179 5.179
27 C -0.097 4.097
28 C -0.137 4.137
29 C -0.068 4.068
30 C -0.160 4.160
31 C -0.173 4.173
32 H 0.064 0.936
33 H 0.217 0.783
34 H 0.079 0.921
35 H 0.083 0.917
36 H 0.078 0.922
37 H 0.079 0.921
38 H 0.230 0.770
39 H 0.118 0.882
40 H 0.119 0.881
41 H 0.192 0.808
42 H 0.169 0.831
43 H 0.171 0.829
44 H 0.149 0.851
45 H 0.081 0.919
46 H 0.077 0.923
47 H 0.084 0.916
48 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges 6.842 -30.335 -1.486 31.133
hybrid contribution 0.892 1.328 0.879 1.825
sum 7.734 -29.008 -0.607 30.027
Atomic orbital electron populations
1.69669 1.05095 1.25479 1.57882 1.24753 0.95510 0.97681 1.03226
0.86141 0.78749 0.84291 0.77161 1.20594 1.21935 1.21934 1.19286
0.90978 0.84160 1.42325 0.91168 1.42454 1.05835 0.99816 1.88495
1.20231 0.94350 0.86034 0.92618 0.93649 1.21763 0.98982 0.93729
1.01558 1.21822 1.00361 0.97737 0.95921 1.21075 0.95856 0.81648
0.97224 0.89627 1.46201 1.10105 1.05922 1.75740 1.20635 0.88472
0.85201 0.76277 1.90736 1.13940 1.87469 1.48295 1.19953 0.96512
0.89337 1.04821 1.19456 1.05081 1.00685 0.91017 1.21720 0.93197
0.90752 0.99212 1.41570 1.39752 1.31803 1.05289 0.74304 1.19356
1.02366 1.00902 0.84588 1.21790 0.97937 0.98711 0.87285 1.67558
1.19033 1.17790 1.13503 1.22050 0.94624 0.92765 1.00261 1.21229
1.00514 1.00335 0.91650 1.19187 0.98025 0.96090 0.93482 1.21805
0.98656 0.95474 1.00041 1.22222 0.99712 0.94202 1.01164 0.93594
0.78293 0.92123 0.91709 0.92180 0.92128 0.76957 0.88229 0.88093
0.80829 0.83065 0.82883 0.85148 0.91875 0.92287 0.91596 0.92448
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -28.39 13.06 55.49 0.72 -27.67 16
2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16
3 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16
4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16
5 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16
6 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16
7 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16
8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16
9 N -0.73 -18.19 5.12 -53.43 -0.27 -18.46 16
10 C 0.18 3.46 2.77 -67.93 -0.19 3.27 16
11 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16
12 C -0.12 -2.06 5.39 -26.73 -0.14 -2.21 16
13 C -0.12 -1.66 5.49 -26.73 -0.15 -1.80 16
14 C 0.15 1.88 2.45 -67.93 -0.17 1.72 16
15 H 0.09 1.33 7.58 -51.93 -0.39 0.94 16
16 N -0.73 -7.20 5.08 -53.81 -0.27 -7.47 16
17 C 0.51 5.68 7.79 -10.98 -0.09 5.59 16
18 O -0.53 -8.49 15.70 5.56 0.09 -8.41 16
19 C -0.07 -0.48 6.23 -29.03 -0.18 -0.66 16
20 C -0.15 -1.44 4.80 -102.85 -0.49 -1.93 16
21 C 0.08 0.59 11.74 -16.73 -0.20 0.39 16
22 N -0.58 -4.02 6.06 -10.64 -0.06 -4.09 16
23 H 0.42 1.46 8.96 -40.82 -0.37 1.10 16
24 C 0.04 0.36 7.33 -84.01 -0.62 -0.25 16
25 C 0.11 1.06 11.25 -17.36 -0.20 0.87 16
26 N -0.47 -5.31 10.32 -13.41 -0.14 -5.44 16
27 C 0.05 0.54 11.11 -17.93 -0.20 0.34 16
28 C -0.12 -1.21 10.12 -39.56 -0.40 -1.61 16
29 C -0.06 -0.61 6.42 -105.14 -0.67 -1.29 16
30 C -0.12 -1.55 5.39 -26.73 -0.14 -1.69 16
31 C -0.13 -2.27 5.50 -26.73 -0.15 -2.42 16
32 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16
33 H 0.38 10.33 7.80 -40.82 -0.32 10.01 16
34 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16
35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16
36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16
37 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16
38 H 0.40 2.66 8.60 -40.82 -0.35 2.31 16
39 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16
40 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16
41 H 0.17 0.70 8.06 -52.48 -0.42 0.28 16
42 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16
43 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16
44 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16
45 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
46 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
47 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16
48 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16
LS Contribution 396.23 15.07 5.97 5.97
Total: -1.00 -36.54 396.23 -10.53 -47.07
By element:
Atomic # 1 Polarization: 17.35 SS G_CDS: -7.31 Total: 10.04 kcal
Atomic # 6 Polarization: -4.69 SS G_CDS: -4.22 Total: -8.92 kcal
Atomic # 7 Polarization: -63.11 SS G_CDS: -0.03 Total: -63.13 kcal
Atomic # 8 Polarization: -8.49 SS G_CDS: 0.09 Total: -8.41 kcal
Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal
Total LS contribution 5.97 Total: 5.97 kcal
Total: -36.54 -10.53 -47.07 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001034715083.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.612 kcal
(2) G-P(sol) polarization free energy of solvation -36.543 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.069 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.528 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.072 kcal
(6) G-S(sol) free energy of system = (1) + (5) 27.540 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds