Wall clock time and date at job start Sat Apr 11 2020 06:39:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31614 * 1
3 3 Si 1.86803 * 119.99963 * 2 1
4 4 H 1.48497 * 109.47219 * 180.02562 * 3 2 1
5 5 H 1.48505 * 109.47003 * 299.99885 * 3 2 1
6 6 H 1.48496 * 109.47087 * 59.99485 * 3 2 1
7 7 C 1.38814 * 120.00154 * 179.97438 * 2 1 3
8 8 H 1.07997 * 119.99700 * 179.97438 * 7 2 1
9 9 N 1.36933 * 120.00104 * 0.02562 * 7 2 1
10 10 C 1.46496 * 120.00258 * 179.97438 * 9 7 2
11 11 H 1.09002 * 109.47021 * 34.99609 * 10 9 7
12 12 C 1.53005 * 109.47414 * 154.99497 * 10 9 7
13 13 C 1.52997 * 109.47452 * 180.02562 * 12 10 9
14 14 C 1.53002 * 109.46817 * 300.00239 * 13 12 10
15 15 H 1.08992 * 109.47063 * 299.99823 * 14 13 12
16 16 N 1.46499 * 109.46799 * 179.97438 * 14 13 12
17 17 C 1.34778 * 119.99771 * 85.00174 * 16 14 13
18 18 O 1.21279 * 120.00041 * 359.97438 * 17 16 14
19 19 C 1.50703 * 119.99935 * 179.97438 * 17 16 14
20 20 C 1.50699 * 109.47042 * 179.97438 * 19 17 16
21 21 C 1.34461 * 126.51628 * 264.68570 * 20 19 17
22 22 N 1.36667 * 109.96913 * 179.89556 * 21 20 19
23 23 H 0.97000 * 125.05158 * 180.16064 * 22 21 20
24 24 C 1.37549 * 109.89835 * 0.38202 * 22 21 20
25 25 C 1.38862 * 134.46800 * 179.77255 * 24 22 21
26 26 N 1.31737 * 120.27821 * 180.02562 * 25 24 22
27 27 C 1.32302 * 122.56782 * 359.97438 * 26 25 24
28 28 C 1.36639 * 121.32031 * 0.02562 * 27 26 25
29 29 C 1.39835 * 118.70245 * 0.02562 * 28 27 26
30 30 C 1.53000 * 109.47233 * 60.00194 * 14 13 12
31 31 C 1.52997 * 109.47060 * 299.99657 * 30 14 13
32 32 H 0.96996 * 120.00649 * 0.02562 * 1 2 3
33 33 H 0.97007 * 120.00049 * 359.97438 * 9 7 2
34 34 H 1.09002 * 109.46935 * 60.00059 * 12 10 9
35 35 H 1.09001 * 109.46812 * 300.00401 * 12 10 9
36 36 H 1.08993 * 109.47194 * 179.97438 * 13 12 10
37 37 H 1.09002 * 109.46695 * 59.99734 * 13 12 10
38 38 H 0.97006 * 120.00568 * 264.99947 * 16 14 13
39 39 H 1.08995 * 109.47091 * 300.00103 * 19 17 16
40 40 H 1.08999 * 109.47030 * 59.99811 * 19 17 16
41 41 H 1.08003 * 125.01422 * 0.02562 * 21 20 19
42 42 H 1.08007 * 119.86399 * 0.02562 * 25 24 22
43 43 H 1.08001 * 119.34165 * 180.02562 * 27 26 25
44 44 H 1.08004 * 120.64784 * 179.97438 * 28 27 26
45 45 H 1.09002 * 109.47398 * 59.99826 * 30 14 13
46 46 H 1.09001 * 109.47194 * 180.02562 * 30 14 13
47 47 H 1.08996 * 109.47853 * 180.02562 * 31 30 14
48 48 H 1.09002 * 109.47153 * 300.00319 * 31 30 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 3.7101 1.3465 -0.0006
5 1 1.8914 2.3965 -1.2126
6 1 1.8913 2.3965 1.2124
7 6 2.0102 -1.2021 0.0005
8 1 3.0902 -1.2021 0.0001
9 7 1.3256 -2.3881 0.0005
10 6 2.0581 -3.6567 0.0005
11 1 2.9688 -3.5505 0.5899
12 6 1.1810 -4.7522 0.6103
13 6 1.9462 -6.0770 0.6109
14 6 2.3105 -6.4561 -0.8260
15 1 1.4001 -6.5627 -1.4156
16 7 3.0438 -7.7244 -0.8253
17 6 2.3705 -8.8920 -0.8250
18 8 1.1577 -8.8927 -0.8248
19 6 3.1248 -10.1967 -0.8250
20 6 2.1461 -11.3426 -0.8240
21 6 1.7032 -12.0157 0.2525
22 7 0.8231 -12.9871 -0.1340
23 1 0.3701 -13.5995 0.4667
24 6 0.6786 -12.9707 -1.5017
25 6 -0.0616 -13.7151 -2.4107
26 7 0.0126 -13.4539 -3.6998
27 6 0.7773 -12.4912 -4.1885
28 6 1.5411 -11.7068 -3.3710
29 6 1.5043 -11.9379 -1.9923
30 6 3.1877 -5.3608 -1.4356
31 6 2.4225 -4.0359 -1.4362
32 1 -0.4851 0.8400 -0.0004
33 1 0.3556 -2.3881 0.0005
34 1 0.2702 -4.8584 0.0209
35 1 0.9218 -4.4822 1.6340
36 1 1.3215 -6.8572 1.0457
37 1 2.8568 -5.9703 1.2005
38 1 4.0138 -7.7239 -0.8252
39 1 3.7513 -10.2542 -1.7150
40 1 3.7516 -10.2539 0.0649
41 1 1.9979 -11.8165 1.2723
42 1 -0.7009 -14.5116 -2.0594
43 1 0.7983 -12.3219 -5.2549
44 1 2.1618 -10.9241 -3.7816
45 1 4.0983 -5.2542 -0.8460
46 1 3.4469 -5.6306 -2.4594
47 1 3.0471 -3.2556 -1.8710
48 1 1.5120 -4.1425 -2.0259
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001034715083.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:39:40
Heat of formation + Delta-G solvation = 1.856415 kcal
Electronic energy + Delta-G solvation = -28690.710296 eV
Core-core repulsion = 24744.285636 eV
Total energy + Delta-G solvation = -3946.424661 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-42.51169 -40.87918 -39.28041 -38.87739 -36.31224 -34.58981 -34.15051 -32.54921
-31.83124 -31.67119 -30.85147 -29.29956 -27.78345 -25.51796 -24.57461 -23.59237
-23.47054 -22.74534 -21.53160 -21.02182 -20.28919 -19.17423 -19.05413 -17.93036
-17.72434 -17.21035 -16.79741 -16.66616 -16.14936 -15.86848 -15.67654 -15.53105
-15.36563 -15.13636 -14.94190 -14.73743 -14.41905 -14.02707 -13.96022 -13.64902
-13.54505 -13.43835 -13.12742 -13.06099 -12.84377 -12.64250 -12.39361 -12.37441
-12.18093 -12.00963 -11.96164 -11.68770 -11.59531 -11.12561 -11.03939 -10.85292
-10.66248 -10.56011 -9.91625 -9.56290 -8.98781 -8.76317 -7.92398 -5.20925
0.02244 0.52925 1.47657 1.48608 1.58539 1.59446 1.82714 2.15938
2.44509 2.57896 2.98285 3.40778 3.58645 3.75700 3.77156 3.80181
3.85935 3.92283 3.97102 4.12968 4.20493 4.28256 4.40259 4.43218
4.43928 4.56729 4.59779 4.61964 4.63831 4.70208 4.71122 4.78291
4.89292 5.00255 5.03186 5.14706 5.18133 5.25529 5.27955 5.31440
5.50551 5.55756 5.56440 5.63673 5.65980 5.67623 5.98851 6.30037
6.62038 6.76714 7.10164 7.34954 7.47603 8.12719 8.35054 9.31805
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.025108 B = 0.001822 C = 0.001799
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1114.917109 B =15365.393729 C =15560.696833
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.974 5.974
2 C -0.083 4.083
3 Si 0.972 3.028
4 H -0.262 1.262
5 H -0.297 1.297
6 H -0.296 1.296
7 C -0.232 4.232
8 H 0.080 0.920
9 N -0.742 5.742
10 C 0.173 3.827
11 H 0.050 0.950
12 C -0.114 4.114
13 C -0.107 4.107
14 C 0.154 3.846
15 H 0.055 0.945
16 N -0.713 5.713
17 C 0.508 3.492
18 O -0.584 6.584
19 C -0.055 4.055
20 C -0.185 4.185
21 C 0.091 3.909
22 N -0.570 5.570
23 H 0.435 0.565
24 C 0.021 3.979
25 C 0.105 3.895
26 N -0.499 5.499
27 C 0.037 3.963
28 C -0.132 4.132
29 C -0.083 4.083
30 C -0.107 4.107
31 C -0.125 4.125
32 H 0.249 0.751
33 H 0.369 0.631
34 H 0.043 0.957
35 H 0.055 0.945
36 H 0.055 0.945
37 H 0.082 0.918
38 H 0.418 0.582
39 H 0.118 0.882
40 H 0.139 0.861
41 H 0.211 0.789
42 H 0.177 0.823
43 H 0.168 0.832
44 H 0.140 0.860
45 H 0.088 0.912
46 H 0.077 0.923
47 H 0.051 0.949
48 H 0.038 0.962
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.145 -31.483 0.188 33.398
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.625 5.625
2 C -0.275 4.275
3 Si 0.802 3.198
4 H -0.186 1.186
5 H -0.224 1.224
6 H -0.223 1.223
7 C -0.364 4.364
8 H 0.098 0.902
9 N -0.381 5.381
10 C 0.065 3.935
11 H 0.068 0.932
12 C -0.153 4.153
13 C -0.146 4.146
14 C 0.049 3.951
15 H 0.073 0.927
16 N -0.365 5.365
17 C 0.295 3.705
18 O -0.463 6.463
19 C -0.095 4.095
20 C -0.192 4.192
21 C -0.039 4.039
22 N -0.174 5.174
23 H 0.276 0.724
24 C -0.090 4.090
25 C -0.062 4.062
26 N -0.208 5.208
27 C -0.112 4.112
28 C -0.152 4.152
29 C -0.095 4.095
30 C -0.145 4.145
31 C -0.165 4.165
32 H 0.058 0.942
33 H 0.200 0.800
34 H 0.062 0.938
35 H 0.073 0.927
36 H 0.074 0.926
37 H 0.100 0.900
38 H 0.255 0.745
39 H 0.136 0.864
40 H 0.157 0.843
41 H 0.227 0.773
42 H 0.194 0.806
43 H 0.185 0.815
44 H 0.158 0.842
45 H 0.106 0.894
46 H 0.096 0.904
47 H 0.070 0.930
48 H 0.057 0.943
Dipole moment (debyes) X Y Z Total
from point charges 9.941 -31.913 -0.367 33.427
hybrid contribution -0.068 1.707 0.581 1.804
sum 9.872 -30.206 0.214 31.779
Atomic orbital electron populations
1.69838 1.06751 1.25808 1.60135 1.25600 0.96370 1.01232 1.04304
0.85074 0.78423 0.79873 0.76434 1.18603 1.22411 1.22299 1.19697
0.91524 0.85114 1.40052 0.90222 1.42726 1.05412 1.01303 1.88622
1.20490 0.94249 0.84528 0.94238 0.93190 1.21644 0.98428 0.94877
1.00322 1.21705 1.00592 0.95312 0.96987 1.20730 0.95233 0.83236
0.95944 0.92709 1.45964 1.11020 1.04489 1.75055 1.21378 0.87979
0.86440 0.74657 1.90724 1.16564 1.88214 1.50786 1.19995 0.95983
0.85990 1.07496 1.19795 1.06528 1.02016 0.90881 1.22362 0.91668
0.89476 1.00397 1.41635 1.39347 1.31858 1.04515 0.72438 1.19492
1.02581 1.01032 0.85867 1.22219 0.97924 0.99099 0.86984 1.67572
1.20021 1.18672 1.14546 1.22355 0.94752 0.92862 1.01191 1.21408
1.01024 1.00801 0.91997 1.19640 0.98747 0.96892 0.94223 1.21662
0.98544 0.92506 1.01797 1.22018 0.99277 0.96511 0.98739 0.94228
0.80001 0.93813 0.92659 0.92650 0.89957 0.74502 0.86373 0.84318
0.77258 0.80605 0.81483 0.84189 0.89363 0.90401 0.93011 0.94347
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -60.88 13.06 21.65 0.28 -60.59 16
2 C -0.08 -4.84 5.50 84.86 0.47 -4.37 16
3 Si 0.97 46.36 29.55 68.60 2.03 48.39 16
4 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16
5 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16
6 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16
7 C -0.23 -12.84 9.93 84.03 0.83 -12.01 16
8 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16
9 N -0.74 -37.86 5.12 -322.94 -1.65 -39.52 16
10 C 0.17 6.68 2.77 44.99 0.12 6.80 16
11 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16
12 C -0.11 -3.88 5.39 30.60 0.16 -3.71 16
13 C -0.11 -2.78 5.49 30.59 0.17 -2.62 16
14 C 0.15 3.69 2.45 44.99 0.11 3.80 16
15 H 0.05 1.70 7.58 -2.39 -0.02 1.68 16
16 N -0.71 -11.82 5.08 -442.54 -2.25 -14.07 16
17 C 0.51 10.12 7.79 87.66 0.68 10.81 16
18 O -0.58 -18.36 15.70 -3.03 -0.05 -18.40 16
19 C -0.05 -0.61 6.23 29.10 0.18 -0.43 16
20 C -0.19 -3.01 4.80 -18.72 -0.09 -3.10 16
21 C 0.09 1.06 11.74 83.08 0.97 2.03 16
22 N -0.57 -6.72 6.06 -187.58 -1.14 -7.86 16
23 H 0.44 2.03 8.96 -92.71 -0.83 1.19 16
24 C 0.02 0.38 7.33 39.08 0.29 0.67 16
25 C 0.11 1.99 11.25 84.86 0.95 2.95 16
26 N -0.50 -11.44 10.32 -196.33 -2.03 -13.47 16
27 C 0.04 0.79 11.11 84.25 0.94 1.72 16
28 C -0.13 -2.75 10.12 22.28 0.23 -2.53 16
29 C -0.08 -1.76 6.42 -20.20 -0.13 -1.89 16
30 C -0.11 -2.44 5.39 30.59 0.16 -2.28 16
31 C -0.12 -4.22 5.50 30.59 0.17 -4.05 16
32 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16
33 H 0.37 20.66 7.80 -92.70 -0.72 19.93 16
34 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16
35 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16
36 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16
37 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16
38 H 0.42 3.65 8.60 -92.70 -0.80 2.85 16
39 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16
40 H 0.14 0.50 8.14 -2.39 -0.02 0.48 16
41 H 0.21 0.75 8.06 -2.91 -0.02 0.72 16
42 H 0.18 2.13 8.06 -2.91 -0.02 2.10 16
43 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16
44 H 0.14 2.41 8.06 -2.91 -0.02 2.38 16
45 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16
46 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16
47 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16
48 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16
Total: -1.00 -82.99 396.23 0.07 -82.92
By element:
Atomic # 1 Polarization: 32.15 SS G_CDS: -1.35 Total: 30.80 kcal
Atomic # 6 Polarization: -14.42 SS G_CDS: 6.22 Total: -8.20 kcal
Atomic # 7 Polarization: -128.72 SS G_CDS: -6.78 Total: -135.50 kcal
Atomic # 8 Polarization: -18.36 SS G_CDS: -0.05 Total: -18.40 kcal
Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal
Total: -82.99 0.07 -82.92 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001034715083.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 84.776 kcal
(2) G-P(sol) polarization free energy of solvation -82.993 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.782 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.074 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.919 kcal
(6) G-S(sol) free energy of system = (1) + (5) 1.856 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds