Wall clock time and date at job start Sat Apr 11 2020 06:40:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46906 * 1
3 3 C 1.46903 * 110.99856 * 2 1
4 4 C 1.53000 * 109.47143 * 66.04773 * 3 2 1
5 5 C 1.52997 * 109.47273 * 179.97438 * 4 3 2
6 6 N 1.46499 * 109.47555 * 179.97438 * 5 4 3
7 7 C 1.34777 * 120.00199 * 180.02562 * 6 5 4
8 8 O 1.21283 * 119.99750 * 359.97438 * 7 6 5
9 9 C 1.50702 * 119.99928 * 180.27479 * 7 6 5
10 10 S 1.80999 * 109.46903 * 179.72354 * 9 7 6
11 11 C 1.76200 * 99.99730 * 179.97438 * 10 9 7
12 12 H 1.08001 * 120.00351 * 0.02562 * 11 10 9
13 13 C 1.38796 * 120.00095 * 179.97438 * 11 10 9
14 14 N 1.31630 * 120.00506 * 180.02562 * 13 11 10
15 15 Si 1.86809 * 119.99909 * 359.97438 * 13 11 10
16 16 H 1.48497 * 109.47104 * 90.00095 * 15 13 11
17 17 H 1.48502 * 109.46943 * 210.00235 * 15 13 11
18 18 H 1.48497 * 109.46910 * 330.00035 * 15 13 11
19 19 C 1.46897 * 111.00067 * 236.04471 * 2 1 3
20 20 C 1.53005 * 109.47073 * 293.95789 * 19 2 1
21 21 H 1.09004 * 115.56083 * 29.38205 * 20 19 2
22 22 C 1.53181 * 117.51785 * 243.60936 * 20 19 2
23 23 C 1.52133 * 59.77268 * 252.57761 * 22 20 19
24 24 C 1.54040 * 121.47348 * 249.14534 * 23 22 20
25 25 C 1.55181 * 101.82880 * 195.69955 * 24 23 22
26 26 O 1.44453 * 103.63152 * 36.32983 * 25 24 23
27 27 C 1.43988 * 107.04944 * 320.42891 * 26 25 24
28 28 H 1.09002 * 109.46656 * 59.99564 * 1 2 3
29 29 H 1.08996 * 109.47468 * 179.97438 * 1 2 3
30 30 H 1.09000 * 109.47184 * 300.00164 * 1 2 3
31 31 H 1.08992 * 109.47265 * 306.04647 * 3 2 1
32 32 H 1.08997 * 109.46940 * 186.04278 * 3 2 1
33 33 H 1.08998 * 109.47307 * 59.99379 * 4 3 2
34 34 H 1.09005 * 109.46653 * 299.99314 * 4 3 2
35 35 H 1.08998 * 109.47382 * 59.99521 * 5 4 3
36 36 H 1.09002 * 109.47216 * 299.99958 * 5 4 3
37 37 H 0.97000 * 119.99484 * 359.97438 * 6 5 4
38 38 H 1.09004 * 109.46965 * 299.72211 * 9 7 6
39 39 H 1.08994 * 109.46990 * 59.72065 * 9 7 6
40 40 H 0.97002 * 120.00159 * 180.02562 * 14 13 11
41 41 H 1.09006 * 109.47071 * 53.95497 * 19 2 1
42 42 H 1.09000 * 109.46924 * 173.95440 * 19 2 1
43 43 H 1.08997 * 117.52033 * 359.97438 * 22 20 19
44 44 H 1.09000 * 117.52048 * 145.10170 * 22 20 19
45 45 H 1.09005 * 110.95915 * 313.83512 * 24 23 22
46 46 H 1.09002 * 110.95961 * 77.56394 * 24 23 22
47 47 H 1.09000 * 110.59528 * 277.78951 * 25 24 23
48 48 H 1.09004 * 110.59012 * 154.86692 * 25 24 23
49 49 H 1.08997 * 109.97471 * 266.93889 * 27 26 25
50 50 H 1.09000 * 109.97203 * 145.66494 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4691 0.0000 0.0000
3 6 1.9955 1.3715 0.0000
4 6 1.6315 2.0575 1.3183
5 6 2.1803 3.4856 1.3186
6 7 1.8313 4.1427 2.5806
7 6 2.2127 5.4157 2.8056
8 8 2.8453 6.0170 1.9634
9 6 1.8590 6.0895 4.1063
10 16 2.5133 7.7771 4.1089
11 6 1.9695 8.3136 5.6967
12 1 1.4090 7.6426 6.3308
13 6 2.2624 9.5982 6.1331
14 7 1.8566 9.9988 7.3195
15 14 3.2338 10.7581 5.0374
16 1 2.2979 11.5299 4.1809
17 1 4.0193 11.6944 5.8810
18 1 4.1563 9.9721 4.1793
19 6 1.9955 -0.7660 -1.1375
20 6 1.6314 -2.2427 -0.9703
21 1 0.7101 -2.4408 -0.4225
22 6 2.7816 -3.2409 -0.8056
23 6 1.9929 -3.1887 -2.1055
24 6 1.0552 -4.3369 -2.5240
25 6 0.8291 -4.0308 -4.0284
26 8 2.1080 -3.5234 -4.4685
27 6 2.6156 -2.6856 -3.4132
28 1 -0.3633 0.5139 -0.8900
29 1 -0.3634 -1.0276 -0.0005
30 1 -0.3633 0.5139 0.8900
31 1 1.5612 1.9274 -0.8308
32 1 3.0797 1.3444 -0.1082
33 1 2.0658 1.5015 2.1492
34 1 0.5472 2.0845 1.4264
35 1 1.7464 4.0418 0.4876
36 1 3.2646 3.4582 1.2105
37 1 1.3251 3.6618 3.2539
38 1 0.7750 6.1199 4.2167
39 1 2.2931 5.5302 4.9350
40 1 2.0610 10.8968 7.6243
41 1 1.5612 -0.3872 -2.0628
42 1 3.0798 -0.6611 -1.1755
43 1 3.7972 -2.8454 -0.8169
44 1 2.6166 -4.0956 -0.1496
45 1 1.5400 -5.3042 -2.3915
46 1 0.1162 -4.2943 -1.9721
47 1 0.0533 -3.2754 -4.1536
48 1 0.5706 -4.9407 -4.5701
49 1 2.3266 -1.6495 -3.5887
50 1 3.7015 -2.7662 -3.3636
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001234154820.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:40:38
Heat of formation + Delta-G solvation = -59.154437 kcal
Electronic energy + Delta-G solvation = -26131.754464 eV
Core-core repulsion = 22285.835375 eV
Total energy + Delta-G solvation = -3845.919090 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-40.59431 -39.33444 -38.39132 -36.60939 -35.01619 -32.43997 -32.01266 -30.91842
-29.35701 -28.23024 -27.62882 -26.40617 -25.59413 -23.51463 -23.11202 -21.51118
-21.10861 -20.31145 -19.70015 -17.86028 -16.93269 -16.75559 -16.38973 -16.31061
-16.14929 -15.66202 -15.56923 -15.34318 -14.99283 -14.80436 -14.47801 -14.16091
-13.88949 -13.74619 -13.29559 -13.24582 -13.12728 -12.87430 -12.79580 -12.60699
-12.32201 -12.20080 -11.98555 -11.92452 -11.70060 -11.67856 -11.33389 -11.25900
-11.04167 -11.00118 -10.60387 -10.57516 -10.35680 -10.07487 -9.85617 -9.52876
-9.02087 -8.96148 -8.78879 -8.49964 -6.91709 -6.28849 -4.00610 2.75172
2.97456 2.98200 3.27232 3.33364 3.37885 3.49370 3.51035 3.70211
3.76370 4.14306 4.21291 4.33351 4.34348 4.55733 4.58868 4.64562
4.71531 4.75523 4.78560 4.84745 4.91339 5.00027 5.03405 5.10177
5.10608 5.14795 5.18163 5.19389 5.22752 5.27078 5.31528 5.32504
5.35486 5.39838 5.45594 5.49398 5.55921 5.69861 5.75623 5.85968
5.93533 6.01858 6.28984 6.50654 6.56020 6.60386 7.61535 7.94186
8.41667 8.49563 9.17424 10.80376
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.040765 B = 0.001315 C = 0.001297
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 686.696969 B =21289.551256 C =21590.378662
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.018 3.982
2 N -0.538 5.538
3 C 0.058 3.942
4 C -0.127 4.127
5 C 0.122 3.878
6 N -0.737 5.737
7 C 0.530 3.470
8 O -0.521 6.521
9 C -0.124 4.124
10 S -0.142 6.142
11 C -0.522 4.522
12 H 0.088 0.912
13 C 0.096 3.904
14 N -0.881 5.881
15 Si 0.856 3.144
16 H -0.267 1.267
17 H -0.274 1.274
18 H -0.235 1.235
19 C 0.083 3.917
20 C -0.123 4.123
21 H 0.112 0.888
22 C -0.150 4.150
23 C -0.167 4.167
24 C -0.119 4.119
25 C 0.048 3.952
26 O -0.378 6.378
27 C 0.083 3.917
28 H 0.026 0.974
29 H 0.068 0.932
30 H 0.073 0.927
31 H 0.039 0.961
32 H 0.079 0.921
33 H 0.079 0.921
34 H 0.070 0.930
35 H 0.064 0.936
36 H 0.066 0.934
37 H 0.400 0.600
38 H 0.097 0.903
39 H 0.098 0.902
40 H 0.271 0.729
41 H 0.039 0.961
42 H 0.078 0.922
43 H 0.099 0.901
44 H 0.098 0.902
45 H 0.081 0.919
46 H 0.080 0.920
47 H 0.061 0.939
48 H 0.093 0.907
49 H 0.063 0.937
50 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.303 -31.630 -19.499 37.304
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 N -0.261 5.261
3 C -0.070 4.070
4 C -0.165 4.165
5 C -0.002 4.002
6 N -0.391 5.391
7 C 0.316 3.684
8 O -0.395 6.395
9 C -0.275 4.275
10 S 0.084 5.916
11 C -0.669 4.669
12 H 0.106 0.894
13 C -0.112 4.112
14 N -0.517 5.517
15 Si 0.681 3.319
16 H -0.192 1.192
17 H -0.199 1.199
18 H -0.159 1.159
19 C -0.045 4.045
20 C -0.142 4.142
21 H 0.130 0.870
22 C -0.186 4.186
23 C -0.168 4.168
24 C -0.157 4.157
25 C -0.028 4.028
26 O -0.296 6.296
27 C 0.006 3.994
28 H 0.045 0.955
29 H 0.087 0.913
30 H 0.092 0.908
31 H 0.057 0.943
32 H 0.097 0.903
33 H 0.098 0.902
34 H 0.088 0.912
35 H 0.082 0.918
36 H 0.085 0.915
37 H 0.234 0.766
38 H 0.115 0.885
39 H 0.116 0.884
40 H 0.081 0.919
41 H 0.058 0.942
42 H 0.097 0.903
43 H 0.118 0.882
44 H 0.117 0.883
45 H 0.100 0.900
46 H 0.099 0.901
47 H 0.079 0.921
48 H 0.111 0.889
49 H 0.081 0.919
50 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges -1.983 -30.743 -20.555 37.035
hybrid contribution -1.115 0.133 0.645 1.296
sum -3.099 -30.610 -19.910 36.646
Atomic orbital electron populations
1.22510 0.87367 1.02076 1.01098 1.61911 1.08055 1.13545 1.42633
1.22019 1.00578 0.87610 0.96783 1.21774 1.01733 0.94482 0.98524
1.21199 1.00466 0.91827 0.86743 1.45939 1.59274 1.14118 1.19791
1.20286 0.78614 0.80942 0.88584 1.90698 1.38476 1.63929 1.46423
1.23281 1.05198 1.01915 0.97090 1.84787 1.73604 1.07448 1.25774
1.22322 1.41407 1.02775 1.00431 0.89387 1.24707 0.94677 0.97120
0.94741 1.69938 1.44677 1.19152 1.17952 0.86737 0.81747 0.81985
0.81402 1.19213 1.19923 1.15926 1.21674 1.00116 0.91096 0.91584
1.22342 1.00331 0.91355 1.00158 0.86969 1.23016 0.96658 1.01589
0.97374 1.22332 1.02796 1.00210 0.91446 1.22606 0.99069 0.97633
0.96367 1.23556 0.86457 0.99064 0.93726 1.88934 1.34563 1.66169
1.39980 1.22514 0.98809 0.94052 0.84022 0.95525 0.91305 0.90823
0.94315 0.90264 0.90218 0.91163 0.91798 0.91541 0.76632 0.88513
0.88421 0.91944 0.94247 0.90333 0.88244 0.88338 0.89999 0.90097
0.92075 0.88867 0.91941 0.89503
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.10 9.15 60.07 0.55 0.65 16
2 N -0.54 -3.60 4.76 -242.91 -1.16 -4.76 16
3 C 0.06 0.41 4.96 -3.82 -0.02 0.39 16
4 C -0.13 -0.94 5.25 -26.73 -0.14 -1.08 16
5 C 0.12 1.29 5.67 -4.04 -0.02 1.27 16
6 N -0.74 -9.16 5.56 -60.29 -0.33 -9.50 16
7 C 0.53 9.39 7.85 -10.98 -0.09 9.30 16
8 O -0.52 -11.28 15.86 5.55 0.09 -11.20 16
9 C -0.12 -2.39 6.16 36.01 0.22 -2.17 16
10 S -0.14 -3.62 18.55 -107.50 -1.99 -5.62 16
11 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16
12 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16
13 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16
14 N -0.88 -26.59 13.97 55.49 0.78 -25.81 16
15 Si 0.86 21.81 27.74 -169.99 -4.72 17.10 16
16 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16
17 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16
18 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16
19 C 0.08 0.49 4.43 -3.82 -0.02 0.47 16
20 C -0.12 -0.66 5.55 -90.96 -0.51 -1.17 16
21 H 0.11 0.61 6.36 -51.93 -0.33 0.28 16
22 C -0.15 -0.76 9.95 -27.08 -0.27 -1.03 16
23 C -0.17 -0.89 2.44 -154.68 -0.38 -1.27 16
24 C -0.12 -0.55 6.94 -25.03 -0.17 -0.73 16
25 C 0.05 0.26 7.73 38.31 0.30 0.56 16
26 O -0.38 -3.10 11.53 -35.23 -0.41 -3.51 16
27 C 0.08 0.52 7.12 37.33 0.27 0.79 16
28 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16
29 H 0.07 0.36 6.22 -51.93 -0.32 0.03 16
30 H 0.07 0.43 6.47 -51.93 -0.34 0.09 16
31 H 0.04 0.28 8.12 -51.93 -0.42 -0.15 16
32 H 0.08 0.54 7.93 -51.93 -0.41 0.13 16
33 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16
34 H 0.07 0.49 6.55 -51.93 -0.34 0.15 16
35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
37 H 0.40 3.81 8.47 -40.82 -0.35 3.47 16
38 H 0.10 1.73 8.14 -51.91 -0.42 1.30 16
39 H 0.10 1.75 8.14 -51.92 -0.42 1.32 16
40 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16
41 H 0.04 0.24 7.39 -51.93 -0.38 -0.14 16
42 H 0.08 0.45 7.67 -51.93 -0.40 0.05 16
43 H 0.10 0.48 8.04 -51.93 -0.42 0.07 16
44 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16
45 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16
46 H 0.08 0.30 8.13 -51.93 -0.42 -0.13 16
47 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16
48 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16
49 H 0.06 0.38 6.91 -51.93 -0.36 0.02 16
50 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16
LS Contribution 411.83 15.07 6.21 6.21
Total: -1.00 -34.64 411.83 -10.32 -44.95
By element:
Atomic # 1 Polarization: 6.90 SS G_CDS: -8.72 Total: -1.81 kcal
Atomic # 6 Polarization: -5.99 SS G_CDS: -0.06 Total: -6.05 kcal
Atomic # 7 Polarization: -39.35 SS G_CDS: -0.72 Total: -40.07 kcal
Atomic # 8 Polarization: -14.39 SS G_CDS: -0.32 Total: -14.71 kcal
Atomic # 14 Polarization: 21.81 SS G_CDS: -4.72 Total: 17.10 kcal
Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.62 kcal
Total LS contribution 6.21 Total: 6.21 kcal
Total: -34.64 -10.32 -44.95 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001234154820.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -14.200 kcal
(2) G-P(sol) polarization free energy of solvation -34.637 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.837 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.317 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.954 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.154 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds