Wall clock time and date at job start Sat Apr 11 2020 06:40:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46906 * 1
3 3 C 1.46903 * 110.99856 * 2 1
4 4 C 1.53000 * 109.47143 * 66.04773 * 3 2 1
5 5 C 1.52997 * 109.47273 * 179.97438 * 4 3 2
6 6 N 1.46499 * 109.47555 * 179.97438 * 5 4 3
7 7 C 1.34777 * 120.00199 * 180.02562 * 6 5 4
8 8 O 1.21283 * 119.99750 * 359.97438 * 7 6 5
9 9 C 1.50702 * 119.99928 * 180.27479 * 7 6 5
10 10 S 1.80999 * 109.46903 * 179.72354 * 9 7 6
11 11 C 1.76200 * 99.99730 * 179.97438 * 10 9 7
12 12 H 1.08001 * 120.00351 * 0.02562 * 11 10 9
13 13 C 1.38796 * 120.00095 * 179.97438 * 11 10 9
14 14 N 1.31630 * 120.00506 * 180.02562 * 13 11 10
15 15 Si 1.86809 * 119.99909 * 359.97438 * 13 11 10
16 16 H 1.48497 * 109.47104 * 90.00095 * 15 13 11
17 17 H 1.48502 * 109.46943 * 210.00235 * 15 13 11
18 18 H 1.48497 * 109.46910 * 330.00035 * 15 13 11
19 19 C 1.46897 * 111.00067 * 236.04471 * 2 1 3
20 20 C 1.53005 * 109.47073 * 293.95789 * 19 2 1
21 21 H 1.09004 * 115.56083 * 29.38205 * 20 19 2
22 22 C 1.53181 * 117.51785 * 243.60936 * 20 19 2
23 23 C 1.52133 * 59.77268 * 252.57761 * 22 20 19
24 24 C 1.54040 * 121.47348 * 249.14534 * 23 22 20
25 25 C 1.55181 * 101.82880 * 195.69955 * 24 23 22
26 26 O 1.44453 * 103.63152 * 36.32983 * 25 24 23
27 27 C 1.43988 * 107.04944 * 320.42891 * 26 25 24
28 28 H 1.09002 * 109.46656 * 59.99564 * 1 2 3
29 29 H 1.08996 * 109.47468 * 179.97438 * 1 2 3
30 30 H 1.09000 * 109.47184 * 300.00164 * 1 2 3
31 31 H 1.08992 * 109.47265 * 306.04647 * 3 2 1
32 32 H 1.08997 * 109.46940 * 186.04278 * 3 2 1
33 33 H 1.08998 * 109.47307 * 59.99379 * 4 3 2
34 34 H 1.09005 * 109.46653 * 299.99314 * 4 3 2
35 35 H 1.08998 * 109.47382 * 59.99521 * 5 4 3
36 36 H 1.09002 * 109.47216 * 299.99958 * 5 4 3
37 37 H 0.97000 * 119.99484 * 359.97438 * 6 5 4
38 38 H 1.09004 * 109.46965 * 299.72211 * 9 7 6
39 39 H 1.08994 * 109.46990 * 59.72065 * 9 7 6
40 40 H 0.97002 * 120.00159 * 180.02562 * 14 13 11
41 41 H 1.09006 * 109.47071 * 53.95497 * 19 2 1
42 42 H 1.09000 * 109.46924 * 173.95440 * 19 2 1
43 43 H 1.08997 * 117.52033 * 359.97438 * 22 20 19
44 44 H 1.09000 * 117.52048 * 145.10170 * 22 20 19
45 45 H 1.09005 * 110.95915 * 313.83512 * 24 23 22
46 46 H 1.09002 * 110.95961 * 77.56394 * 24 23 22
47 47 H 1.09000 * 110.59528 * 277.78951 * 25 24 23
48 48 H 1.09004 * 110.59012 * 154.86692 * 25 24 23
49 49 H 1.08997 * 109.97471 * 266.93889 * 27 26 25
50 50 H 1.09000 * 109.97203 * 145.66494 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4691 0.0000 0.0000
3 6 1.9955 1.3715 0.0000
4 6 1.6315 2.0575 1.3183
5 6 2.1803 3.4856 1.3186
6 7 1.8313 4.1427 2.5806
7 6 2.2127 5.4157 2.8056
8 8 2.8453 6.0170 1.9634
9 6 1.8590 6.0895 4.1063
10 16 2.5133 7.7771 4.1089
11 6 1.9695 8.3136 5.6967
12 1 1.4090 7.6426 6.3308
13 6 2.2624 9.5982 6.1331
14 7 1.8566 9.9988 7.3195
15 14 3.2338 10.7581 5.0374
16 1 2.2979 11.5299 4.1809
17 1 4.0193 11.6944 5.8810
18 1 4.1563 9.9721 4.1793
19 6 1.9955 -0.7660 -1.1375
20 6 1.6314 -2.2427 -0.9703
21 1 0.7101 -2.4408 -0.4225
22 6 2.7816 -3.2409 -0.8056
23 6 1.9929 -3.1887 -2.1055
24 6 1.0552 -4.3369 -2.5240
25 6 0.8291 -4.0308 -4.0284
26 8 2.1080 -3.5234 -4.4685
27 6 2.6156 -2.6856 -3.4132
28 1 -0.3633 0.5139 -0.8900
29 1 -0.3634 -1.0276 -0.0005
30 1 -0.3633 0.5139 0.8900
31 1 1.5612 1.9274 -0.8308
32 1 3.0797 1.3444 -0.1082
33 1 2.0658 1.5015 2.1492
34 1 0.5472 2.0845 1.4264
35 1 1.7464 4.0418 0.4876
36 1 3.2646 3.4582 1.2105
37 1 1.3251 3.6618 3.2539
38 1 0.7750 6.1199 4.2167
39 1 2.2931 5.5302 4.9350
40 1 2.0610 10.8968 7.6243
41 1 1.5612 -0.3872 -2.0628
42 1 3.0798 -0.6611 -1.1755
43 1 3.7972 -2.8454 -0.8169
44 1 2.6166 -4.0956 -0.1496
45 1 1.5400 -5.3042 -2.3915
46 1 0.1162 -4.2943 -1.9721
47 1 0.0533 -3.2754 -4.1536
48 1 0.5706 -4.9407 -4.5701
49 1 2.3266 -1.6495 -3.5887
50 1 3.7015 -2.7662 -3.3636
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001234154820.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:40:37
Heat of formation + Delta-G solvation = -83.601129 kcal
Electronic energy + Delta-G solvation = -26132.814552 eV
Core-core repulsion = 22285.835375 eV
Total energy + Delta-G solvation = -3846.979178 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-41.03340 -40.65032 -38.95970 -37.18218 -36.01512 -34.67010 -32.95539 -31.40722
-30.62179 -28.70508 -28.10409 -27.87470 -27.06746 -24.18650 -23.54676 -22.22679
-21.72005 -21.38043 -20.14259 -19.85191 -17.83038 -17.58418 -17.21190 -17.17098
-17.05563 -16.91844 -16.36736 -16.33076 -16.01632 -15.77868 -15.40129 -15.28182
-14.90807 -14.63840 -14.58899 -14.23779 -13.99057 -13.61600 -13.55786 -13.35611
-13.26704 -13.08339 -13.00445 -12.87740 -12.71389 -12.57543 -12.42835 -12.33729
-12.10551 -11.86495 -11.76149 -11.66745 -11.16878 -11.02293 -10.98111 -10.78822
-10.53476 -10.51720 -10.13354 -9.29645 -8.99497 -8.51325 -6.22250 0.99547
1.31650 1.47232 1.56267 1.56924 2.20762 2.26211 2.57409 2.72494
2.87078 2.94089 3.02834 3.34935 3.74175 3.78383 3.85894 3.93502
3.97600 4.09641 4.14780 4.21863 4.24195 4.30402 4.35765 4.47652
4.48077 4.51359 4.55813 4.59666 4.64255 4.68513 4.76126 4.76555
4.80869 4.81855 4.87000 4.94074 5.02522 5.05308 5.10092 5.16319
5.20818 5.30715 5.43860 5.70931 5.84548 6.06681 6.08538 6.11620
6.48106 6.94024 7.20106 8.61046
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.040765 B = 0.001315 C = 0.001297
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 686.696969 B =21289.551256 C =21590.378662
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.017 3.983
2 N -0.543 5.543
3 C 0.059 3.941
4 C -0.112 4.112
5 C 0.123 3.877
6 N -0.712 5.712
7 C 0.533 3.467
8 O -0.565 6.565
9 C -0.112 4.112
10 S -0.178 6.178
11 C -0.530 4.530
12 H 0.063 0.937
13 C 0.047 3.953
14 N -0.917 5.917
15 Si 0.914 3.086
16 H -0.262 1.262
17 H -0.259 1.259
18 H -0.237 1.237
19 C 0.085 3.915
20 C -0.121 4.121
21 H 0.115 0.885
22 C -0.149 4.149
23 C -0.168 4.168
24 C -0.116 4.116
25 C 0.042 3.958
26 O -0.405 6.405
27 C 0.079 3.921
28 H 0.023 0.977
29 H 0.076 0.924
30 H 0.076 0.924
31 H 0.036 0.964
32 H 0.079 0.921
33 H 0.084 0.916
34 H 0.080 0.920
35 H 0.057 0.943
36 H 0.060 0.940
37 H 0.417 0.583
38 H 0.114 0.886
39 H 0.115 0.885
40 H 0.277 0.723
41 H 0.036 0.964
42 H 0.078 0.922
43 H 0.100 0.900
44 H 0.104 0.896
45 H 0.083 0.917
46 H 0.093 0.907
47 H 0.064 0.936
48 H 0.104 0.896
49 H 0.062 0.938
50 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.616 -33.207 -20.122 38.996
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 N -0.266 5.266
3 C -0.069 4.069
4 C -0.150 4.150
5 C -0.002 4.002
6 N -0.365 5.365
7 C 0.319 3.681
8 O -0.444 6.444
9 C -0.263 4.263
10 S 0.049 5.951
11 C -0.677 4.677
12 H 0.081 0.919
13 C -0.158 4.158
14 N -0.555 5.555
15 Si 0.736 3.264
16 H -0.187 1.187
17 H -0.183 1.183
18 H -0.161 1.161
19 C -0.043 4.043
20 C -0.139 4.139
21 H 0.133 0.867
22 C -0.186 4.186
23 C -0.169 4.169
24 C -0.153 4.153
25 C -0.034 4.034
26 O -0.324 6.324
27 C 0.002 3.998
28 H 0.042 0.958
29 H 0.095 0.905
30 H 0.094 0.906
31 H 0.055 0.945
32 H 0.098 0.902
33 H 0.103 0.897
34 H 0.098 0.902
35 H 0.075 0.925
36 H 0.078 0.922
37 H 0.255 0.745
38 H 0.132 0.868
39 H 0.133 0.867
40 H 0.086 0.914
41 H 0.054 0.946
42 H 0.096 0.904
43 H 0.118 0.882
44 H 0.123 0.877
45 H 0.102 0.898
46 H 0.111 0.889
47 H 0.083 0.917
48 H 0.123 0.877
49 H 0.080 0.920
50 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges -2.326 -32.377 -21.161 38.748
hybrid contribution -1.090 0.450 0.817 1.435
sum -3.416 -31.927 -20.344 38.011
Atomic orbital electron populations
1.22546 0.86864 1.02652 1.01066 1.61919 1.08554 1.13189 1.42972
1.21976 1.00695 0.87896 0.96339 1.21635 1.02131 0.92209 0.98988
1.21322 1.00251 0.93311 0.85269 1.45730 1.57684 1.12292 1.20835
1.19974 0.78492 0.82259 0.87390 1.90689 1.40853 1.65352 1.47485
1.23278 1.06016 0.97957 0.99000 1.84721 1.74420 1.12502 1.23473
1.22468 1.40885 1.02683 1.01686 0.91911 1.25546 0.95614 0.98698
0.95975 1.70015 1.45989 1.20024 1.19466 0.85876 0.80579 0.80127
0.79847 1.18698 1.18301 1.16127 1.21659 1.00063 0.91381 0.91193
1.22298 1.00521 0.90960 1.00165 0.86741 1.23075 0.96647 1.01658
0.97175 1.22314 1.03029 1.00454 0.91064 1.22611 0.99476 0.97379
0.95859 1.23729 0.85566 0.99616 0.94450 1.88900 1.35830 1.66604
1.41088 1.22574 0.99013 0.93889 0.84285 0.95807 0.90509 0.90556
0.94541 0.90213 0.89737 0.90163 0.92474 0.92210 0.74545 0.86768
0.86727 0.91365 0.94600 0.90361 0.88161 0.87739 0.89803 0.88883
0.91735 0.87749 0.92021 0.89365
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.16 9.15 127.69 1.17 1.33 16
2 N -0.54 -6.21 4.76 -922.43 -4.39 -10.60 16
3 C 0.06 0.72 4.96 86.30 0.43 1.14 16
4 C -0.11 -1.37 5.25 30.59 0.16 -1.21 16
5 C 0.12 2.34 5.67 86.38 0.49 2.83 16
6 N -0.71 -15.98 5.56 -463.06 -2.57 -18.55 16
7 C 0.53 18.04 7.85 87.66 0.69 18.73 16
8 O -0.57 -24.09 15.86 -3.04 -0.05 -24.13 16
9 C -0.11 -4.14 6.16 71.24 0.44 -3.70 16
10 S -0.18 -8.97 18.55 -56.49 -1.05 -10.02 16
11 C -0.53 -30.80 10.04 67.95 0.68 -30.11 16
12 H 0.06 3.84 8.03 -2.91 -0.02 3.81 16
13 C 0.05 2.76 5.50 84.86 0.47 3.23 16
14 N -0.92 -55.76 13.97 21.65 0.30 -55.46 16
15 Si 0.91 44.97 27.74 68.60 1.90 46.88 16
16 H -0.26 -12.59 7.11 99.48 0.71 -11.89 16
17 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16
18 H -0.24 -11.68 6.74 99.48 0.67 -11.01 16
19 C 0.08 0.88 4.43 86.31 0.38 1.26 16
20 C -0.12 -1.10 5.55 -11.02 -0.06 -1.16 16
21 H 0.11 1.00 6.36 -2.38 -0.02 0.99 16
22 C -0.15 -1.28 9.95 30.37 0.30 -0.98 16
23 C -0.17 -1.59 2.44 -52.29 -0.13 -1.71 16
24 C -0.12 -0.91 6.94 31.69 0.22 -0.69 16
25 C 0.04 0.42 7.73 72.73 0.56 0.98 16
26 O -0.40 -6.49 11.53 -148.98 -1.72 -8.21 16
27 C 0.08 0.96 7.12 72.09 0.51 1.47 16
28 H 0.02 0.25 8.14 -2.39 -0.02 0.23 16
29 H 0.08 0.63 6.22 -2.39 -0.01 0.61 16
30 H 0.08 0.70 6.47 -2.39 -0.02 0.68 16
31 H 0.04 0.46 8.12 -2.39 -0.02 0.44 16
32 H 0.08 0.96 7.93 -2.39 -0.02 0.94 16
33 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16
34 H 0.08 0.87 6.55 -2.38 -0.02 0.86 16
35 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16
36 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16
37 H 0.42 6.59 8.47 -92.71 -0.79 5.81 16
38 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16
39 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16
40 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16
41 H 0.04 0.40 7.39 -2.38 -0.02 0.38 16
42 H 0.08 0.81 7.67 -2.39 -0.02 0.79 16
43 H 0.10 0.84 8.04 -2.39 -0.02 0.82 16
44 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16
45 H 0.08 0.62 8.14 -2.38 -0.02 0.61 16
46 H 0.09 0.50 8.13 -2.39 -0.02 0.48 16
47 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16
48 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16
49 H 0.06 0.72 6.91 -2.39 -0.02 0.71 16
50 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16
Total: -1.00 -74.56 411.83 -1.16 -75.72
By element:
Atomic # 1 Polarization: 12.87 SS G_CDS: 0.10 Total: 12.97 kcal
Atomic # 6 Polarization: -14.91 SS G_CDS: 6.31 Total: -8.59 kcal
Atomic # 7 Polarization: -77.94 SS G_CDS: -6.66 Total: -84.60 kcal
Atomic # 8 Polarization: -30.58 SS G_CDS: -1.77 Total: -32.34 kcal
Atomic # 14 Polarization: 44.97 SS G_CDS: 1.90 Total: 46.88 kcal
Atomic # 16 Polarization: -8.97 SS G_CDS: -1.05 Total: -10.02 kcal
Total: -74.56 -1.16 -75.72 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001234154820.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -7.884 kcal
(2) G-P(sol) polarization free energy of solvation -74.556 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.440 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.161 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.717 kcal
(6) G-S(sol) free energy of system = (1) + (5) -83.601 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds