Wall clock time and date at job start Sat Apr 11 2020 06:40:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31505 * 1
3 3 Si 1.86796 * 120.00159 * 2 1
4 4 H 1.48503 * 109.47109 * 180.02562 * 3 2 1
5 5 H 1.48505 * 109.47066 * 299.99962 * 3 2 1
6 6 H 1.48493 * 109.47409 * 59.99911 * 3 2 1
7 7 C 1.37879 * 119.99983 * 179.97438 * 2 1 3
8 8 H 1.08003 * 120.00453 * 179.97438 * 7 2 1
9 9 C 1.50701 * 119.99954 * 0.02562 * 7 2 1
10 10 C 1.53000 * 109.47289 * 180.02562 * 9 7 2
11 11 C 1.53003 * 109.47286 * 180.02562 * 10 9 7
12 12 H 1.08994 * 109.47413 * 54.99514 * 11 10 9
13 13 N 1.46899 * 109.46642 * 294.99406 * 11 10 9
14 14 C 1.50698 * 109.47045 * 174.99954 * 11 10 9
15 15 O 1.21283 * 120.00472 * 99.99838 * 14 11 10
16 16 N 1.34777 * 119.99538 * 279.99176 * 14 11 10
17 17 C 1.46499 * 119.99665 * 179.72653 * 16 14 11
18 18 C 1.50703 * 109.47138 * 180.28062 * 17 16 14
19 19 C 1.38233 * 119.99680 * 269.72871 * 18 17 16
20 20 C 1.38240 * 120.00155 * 179.76981 * 19 18 17
21 21 C 1.38240 * 119.99333 * 0.50004 * 20 19 18
22 22 C 1.50704 * 119.99554 * 179.72940 * 21 20 19
23 23 N 1.46497 * 109.46954 * 270.01988 * 22 21 20
24 24 C 1.36881 * 126.39635 * 90.00693 * 23 22 21
25 25 C 1.34666 * 106.82072 * 180.02562 * 24 23 22
26 26 N 1.34127 * 108.01865 * 359.97438 * 25 24 23
27 27 C 1.30504 * 109.25611 * 359.73279 * 26 25 24
28 28 C 1.38232 * 120.00255 * 359.74814 * 21 20 19
29 29 C 1.38231 * 120.00146 * 89.99859 * 18 17 16
30 30 H 0.96998 * 120.00408 * 0.02562 * 1 2 3
31 31 H 1.08994 * 109.47379 * 59.99622 * 9 7 2
32 32 H 1.09004 * 109.47137 * 299.99805 * 9 7 2
33 33 H 1.08994 * 109.47393 * 59.99417 * 10 9 7
34 34 H 1.09004 * 109.46697 * 299.99860 * 10 9 7
35 35 H 1.00900 * 110.99932 * 176.04558 * 13 11 10
36 36 H 1.00903 * 111.00374 * 300.00267 * 13 11 10
37 37 H 0.97001 * 120.00485 * 0.02562 * 16 14 11
38 38 H 1.09009 * 109.47454 * 300.27637 * 17 16 14
39 39 H 1.08998 * 109.47492 * 60.27932 * 17 16 14
40 40 H 1.08005 * 120.00115 * 359.97438 * 19 18 17
41 41 H 1.07997 * 120.00418 * 180.23080 * 20 19 18
42 42 H 1.08999 * 109.47084 * 30.02434 * 22 21 20
43 43 H 1.08996 * 109.46701 * 150.01972 * 22 21 20
44 44 H 1.08001 * 126.58975 * 0.02562 * 24 23 22
45 45 H 1.08004 * 125.99129 * 180.02562 * 25 24 23
46 46 H 1.08000 * 125.64925 * 180.29281 * 27 26 25
47 47 H 1.08005 * 119.99795 * 179.97438 * 28 21 20
48 48 H 1.07994 * 120.00283 * 0.02562 * 29 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.7091 1.3463 -0.0006
5 1 1.8903 2.3964 -1.2126
6 1 1.8904 2.3964 1.2124
7 6 2.0044 -1.1941 0.0005
8 1 3.0845 -1.1942 0.0001
9 6 1.2509 -2.4992 0.0005
10 6 2.2451 -3.6621 0.0018
11 6 1.4801 -4.9872 0.0012
12 1 0.7889 -5.0072 -0.8413
13 7 0.7271 -5.1183 1.2557
14 6 2.4548 -6.1299 -0.1214
15 8 2.7856 -6.7533 0.8649
16 7 2.9589 -6.4592 -1.3272
17 6 3.9110 -7.5662 -1.4455
18 6 4.3233 -7.7224 -2.8867
19 6 3.6087 -8.5595 -3.7230
20 6 3.9839 -8.6992 -5.0462
21 6 5.0799 -8.0097 -5.5302
22 6 5.4926 -8.1666 -6.9711
23 7 6.4447 -9.2738 -7.0885
24 6 6.1379 -10.5881 -7.3165
25 6 7.3043 -11.2603 -7.3509
26 7 8.2964 -10.3803 -7.1500
27 6 7.7893 -9.1874 -6.9980
28 6 5.7975 -7.1765 -4.6925
29 6 5.4192 -7.0329 -3.3707
30 1 -0.4850 0.8400 -0.0004
31 1 0.6246 -2.5571 -0.8896
32 1 0.6239 -2.5567 0.8903
33 1 2.8712 -3.6040 0.8921
34 1 2.8724 -3.6048 -0.8878
35 1 0.1627 -5.9547 1.2529
36 1 1.3461 -5.1025 2.0524
37 1 2.6946 -5.9604 -2.1161
38 1 4.7906 -7.3557 -0.8369
39 1 3.4420 -8.4875 -1.0999
40 1 2.7553 -9.1019 -3.3436
41 1 3.4234 -9.3503 -5.7006
42 1 4.6134 -8.3773 -7.5800
43 1 5.9619 -7.2456 -7.3170
44 1 5.1502 -11.0059 -7.4442
45 1 7.4206 -12.3218 -7.5128
46 1 8.3517 -8.2816 -6.8256
47 1 6.6541 -6.6381 -5.0707
48 1 5.9803 -6.3826 -2.7161
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000424145946.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:40:03
Heat of formation + Delta-G solvation = 38.676315 kcal
Electronic energy + Delta-G solvation = -27842.240871 eV
Core-core repulsion = 23897.412841 eV
Total energy + Delta-G solvation = -3944.828030 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-42.40499 -40.24809 -39.48269 -35.96623 -35.18625 -34.33163 -32.82775 -31.69032
-31.46989 -30.13209 -29.79755 -28.28538 -26.44136 -25.03531 -23.33387 -23.30760
-21.72328 -21.58436 -21.08650 -20.72266 -19.86685 -17.97285 -17.48871 -16.82410
-16.41011 -16.19640 -16.11587 -15.51671 -15.37802 -15.02909 -14.82925 -14.53570
-14.41971 -14.30177 -14.02087 -13.93017 -13.68532 -13.51909 -13.26777 -13.08932
-12.79081 -12.58220 -12.34822 -12.05251 -11.75155 -11.57431 -11.48841 -10.94020
-10.72654 -10.56059 -10.36253 -10.21710 -10.04188 -9.84306 -9.42646 -9.41139
-9.30122 -9.16019 -9.01231 -8.87983 -8.37946 -8.23376 -5.96816 -3.98987
0.57756 0.92206 1.69636 2.40572 2.71498 2.85195 3.09477 3.31244
3.39068 3.42563 3.54442 3.99500 4.02386 4.32504 4.36278 4.44152
4.45770 4.47335 4.51856 4.74906 4.84550 4.94338 4.96172 5.05713
5.08185 5.24954 5.32583 5.35377 5.38835 5.49217 5.53481 5.57271
5.79204 5.81204 5.84359 6.00506 6.13415 6.30793 6.37041 6.40138
6.44929 6.61443 6.78041 7.05025 7.32584 7.53738 7.72578 7.73105
7.76334 7.93020 8.09944 8.24584 8.45332 9.09197 9.64308 11.14082
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.013239 B = 0.001882 C = 0.001717
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2114.496398 B =14874.017041 C =16307.014938
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.892 5.892
2 C 0.057 3.943
3 Si 0.888 3.112
4 H -0.274 1.274
5 H -0.285 1.285
6 H -0.284 1.284
7 C -0.522 4.522
8 H 0.052 0.948
9 C 0.030 3.970
10 C -0.095 4.095
11 C 0.079 3.921
12 H 0.098 0.902
13 N -0.807 5.807
14 C 0.483 3.517
15 O -0.553 6.553
16 N -0.727 5.727
17 C 0.157 3.843
18 C -0.092 4.092
19 C -0.101 4.101
20 C -0.099 4.099
21 C -0.114 4.114
22 C 0.146 3.854
23 N -0.454 5.454
24 C -0.054 4.054
25 C -0.032 4.032
26 N -0.497 5.497
27 C 0.184 3.816
28 C -0.098 4.098
29 C -0.098 4.098
30 H 0.259 0.741
31 H 0.013 0.987
32 H 0.035 0.965
33 H 0.053 0.947
34 H 0.053 0.947
35 H 0.334 0.666
36 H 0.348 0.652
37 H 0.404 0.596
38 H 0.075 0.925
39 H 0.074 0.926
40 H 0.127 0.873
41 H 0.124 0.876
42 H 0.101 0.899
43 H 0.104 0.896
44 H 0.172 0.828
45 H 0.168 0.832
46 H 0.202 0.798
47 H 0.126 0.874
48 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.137 -21.140 -15.896 27.984
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.531 5.531
2 C -0.144 4.144
3 Si 0.717 3.283
4 H -0.199 1.199
5 H -0.211 1.211
6 H -0.210 1.210
7 C -0.560 4.560
8 H 0.071 0.929
9 C -0.007 4.007
10 C -0.133 4.133
11 C -0.037 4.037
12 H 0.116 0.884
13 N -0.334 5.334
14 C 0.269 3.731
15 O -0.431 6.431
16 N -0.380 5.380
17 C 0.033 3.967
18 C -0.092 4.092
19 C -0.119 4.119
20 C -0.118 4.118
21 C -0.115 4.115
22 C 0.024 3.976
23 N -0.137 5.137
24 C -0.187 4.187
25 C -0.179 4.179
26 N -0.215 5.215
27 C -0.099 4.099
28 C -0.117 4.117
29 C -0.116 4.116
30 H 0.069 0.931
31 H 0.031 0.969
32 H 0.054 0.946
33 H 0.072 0.928
34 H 0.071 0.929
35 H 0.145 0.855
36 H 0.162 0.838
37 H 0.239 0.761
38 H 0.093 0.907
39 H 0.092 0.908
40 H 0.145 0.855
41 H 0.142 0.858
42 H 0.120 0.880
43 H 0.123 0.877
44 H 0.189 0.811
45 H 0.185 0.815
46 H 0.219 0.781
47 H 0.144 0.856
48 H 0.148 0.852
Dipole moment (debyes) X Y Z Total
from point charges 9.603 -20.863 -15.337 27.617
hybrid contribution 0.020 0.437 -0.302 0.531
sum 9.623 -20.426 -15.639 27.466
Atomic orbital electron populations
1.69978 1.05943 1.26318 1.50885 1.24993 0.94811 0.99074 0.95486
0.86598 0.80091 0.84097 0.77550 1.19872 1.21111 1.21030 1.21312
0.92925 0.91305 1.50503 0.92943 1.19025 0.93573 0.89840 0.98227
1.21658 0.98852 0.92161 1.00660 1.21844 0.93480 0.93203 0.95132
0.88430 1.58999 1.26894 1.44271 1.03278 1.22830 0.82187 0.85703
0.82370 1.90653 1.61156 1.54247 1.37040 1.46230 1.46300 1.34865
1.10605 1.20178 0.93655 0.91105 0.91737 1.20009 0.96102 0.97548
0.95578 1.21105 0.99423 0.98122 0.93288 1.20994 0.96401 0.98686
0.95707 1.19915 0.97115 0.99299 0.95208 1.20761 0.93316 0.89408
0.94079 1.45634 1.07682 1.07734 1.52607 1.22722 1.01262 0.83660
1.11067 1.22308 0.88262 0.99752 1.07616 1.70305 1.32609 0.99512
1.19035 1.25005 0.80658 0.98828 1.05381 1.21038 0.99163 0.97946
0.93546 1.21161 0.96385 0.98529 0.95572 0.93144 0.96877 0.94631
0.92822 0.92870 0.85450 0.83789 0.76127 0.90668 0.90803 0.85467
0.85832 0.88021 0.87729 0.81099 0.81484 0.78119 0.85597 0.85212
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.61 13.28 55.43 0.74 -25.87 16
2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16
3 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16
4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16
5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16
6 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16
7 C -0.52 -14.56 9.11 -34.44 -0.31 -14.88 16
8 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16
9 C 0.03 0.76 4.86 -27.88 -0.14 0.63 16
10 C -0.09 -1.86 4.78 -26.73 -0.13 -1.99 16
11 C 0.08 1.28 3.15 -68.86 -0.22 1.06 16
12 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16
13 N -0.81 -13.27 8.44 -5.66 -0.05 -13.32 16
14 C 0.48 7.25 7.07 -10.99 -0.08 7.17 16
15 O -0.55 -9.87 16.25 5.55 0.09 -9.78 16
16 N -0.73 -8.46 5.55 -61.47 -0.34 -8.80 16
17 C 0.16 1.61 5.80 -5.19 -0.03 1.58 16
18 C -0.09 -0.78 5.25 -104.62 -0.55 -1.33 16
19 C -0.10 -0.76 9.70 -39.58 -0.38 -1.14 16
20 C -0.10 -0.64 9.70 -39.58 -0.38 -1.02 16
21 C -0.11 -0.70 5.46 -104.62 -0.57 -1.27 16
22 C 0.15 0.62 6.28 -5.19 -0.03 0.59 16
23 N -0.45 -2.96 2.73 -119.87 -0.33 -3.29 16
24 C -0.05 -0.37 11.58 -16.56 -0.19 -0.57 16
25 C -0.03 -0.28 11.87 -17.81 -0.21 -0.49 16
26 N -0.50 -5.28 11.25 -14.66 -0.16 -5.45 16
27 C 0.18 1.46 12.56 -90.37 -1.14 0.32 16
28 C -0.10 -0.67 9.70 -39.58 -0.38 -1.05 16
29 C -0.10 -0.79 9.70 -39.58 -0.38 -1.18 16
30 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16
31 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16
32 H 0.04 0.97 7.75 -51.93 -0.40 0.57 16
33 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16
34 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16
35 H 0.33 4.74 9.06 -39.29 -0.36 4.38 16
36 H 0.35 5.84 8.58 -39.29 -0.34 5.50 16
37 H 0.40 4.13 8.46 -40.82 -0.35 3.78 16
38 H 0.08 0.84 8.09 -51.92 -0.42 0.42 16
39 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16
40 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16
41 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16
42 H 0.10 0.28 8.09 -51.93 -0.42 -0.14 16
43 H 0.10 0.28 8.09 -51.93 -0.42 -0.14 16
44 H 0.17 0.70 8.06 -52.49 -0.42 0.27 16
45 H 0.17 1.11 8.06 -52.48 -0.42 0.69 16
46 H 0.20 0.98 8.06 -52.49 -0.42 0.56 16
47 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16
48 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16
LS Contribution 411.62 15.07 6.20 6.20
Total: -1.00 -35.64 411.62 -11.41 -47.05
By element:
Atomic # 1 Polarization: 16.12 SS G_CDS: -7.31 Total: 8.81 kcal
Atomic # 6 Polarization: -6.79 SS G_CDS: -5.23 Total: -12.02 kcal
Atomic # 7 Polarization: -56.59 SS G_CDS: -0.15 Total: -56.74 kcal
Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.78 kcal
Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal
Total LS contribution 6.20 Total: 6.20 kcal
Total: -35.64 -11.41 -47.05 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000424145946.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 85.727 kcal
(2) G-P(sol) polarization free energy of solvation -35.638 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.089 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.413 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.051 kcal
(6) G-S(sol) free energy of system = (1) + (5) 38.676 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds