Wall clock time and date at job start Sat Apr 11 2020 06:40:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31505 * 1
3 3 Si 1.86796 * 120.00159 * 2 1
4 4 H 1.48503 * 109.47109 * 180.02562 * 3 2 1
5 5 H 1.48505 * 109.47066 * 299.99962 * 3 2 1
6 6 H 1.48493 * 109.47409 * 59.99911 * 3 2 1
7 7 C 1.37879 * 119.99983 * 179.97438 * 2 1 3
8 8 H 1.08003 * 120.00453 * 179.97438 * 7 2 1
9 9 C 1.50701 * 119.99954 * 0.02562 * 7 2 1
10 10 C 1.53000 * 109.47289 * 180.02562 * 9 7 2
11 11 C 1.53003 * 109.47286 * 180.02562 * 10 9 7
12 12 H 1.08994 * 109.47413 * 54.99514 * 11 10 9
13 13 N 1.46899 * 109.46642 * 294.99406 * 11 10 9
14 14 C 1.50698 * 109.47045 * 174.99954 * 11 10 9
15 15 O 1.21283 * 120.00472 * 99.99838 * 14 11 10
16 16 N 1.34777 * 119.99538 * 279.99176 * 14 11 10
17 17 C 1.46499 * 119.99665 * 179.72653 * 16 14 11
18 18 C 1.50703 * 109.47138 * 180.28062 * 17 16 14
19 19 C 1.38233 * 119.99680 * 269.72871 * 18 17 16
20 20 C 1.38240 * 120.00155 * 179.76981 * 19 18 17
21 21 C 1.38240 * 119.99333 * 0.50004 * 20 19 18
22 22 C 1.50704 * 119.99554 * 179.72940 * 21 20 19
23 23 N 1.46497 * 109.46954 * 270.01988 * 22 21 20
24 24 C 1.36881 * 126.39635 * 90.00693 * 23 22 21
25 25 C 1.34666 * 106.82072 * 180.02562 * 24 23 22
26 26 N 1.34127 * 108.01865 * 359.97438 * 25 24 23
27 27 C 1.30504 * 109.25611 * 359.73279 * 26 25 24
28 28 C 1.38232 * 120.00255 * 359.74814 * 21 20 19
29 29 C 1.38231 * 120.00146 * 89.99859 * 18 17 16
30 30 H 0.96998 * 120.00408 * 0.02562 * 1 2 3
31 31 H 1.08994 * 109.47379 * 59.99622 * 9 7 2
32 32 H 1.09004 * 109.47137 * 299.99805 * 9 7 2
33 33 H 1.08994 * 109.47393 * 59.99417 * 10 9 7
34 34 H 1.09004 * 109.46697 * 299.99860 * 10 9 7
35 35 H 1.00900 * 110.99932 * 176.04558 * 13 11 10
36 36 H 1.00903 * 111.00374 * 300.00267 * 13 11 10
37 37 H 0.97001 * 120.00485 * 0.02562 * 16 14 11
38 38 H 1.09009 * 109.47454 * 300.27637 * 17 16 14
39 39 H 1.08998 * 109.47492 * 60.27932 * 17 16 14
40 40 H 1.08005 * 120.00115 * 359.97438 * 19 18 17
41 41 H 1.07997 * 120.00418 * 180.23080 * 20 19 18
42 42 H 1.08999 * 109.47084 * 30.02434 * 22 21 20
43 43 H 1.08996 * 109.46701 * 150.01972 * 22 21 20
44 44 H 1.08001 * 126.58975 * 0.02562 * 24 23 22
45 45 H 1.08004 * 125.99129 * 180.02562 * 25 24 23
46 46 H 1.08000 * 125.64925 * 180.29281 * 27 26 25
47 47 H 1.08005 * 119.99795 * 179.97438 * 28 21 20
48 48 H 1.07994 * 120.00283 * 0.02562 * 29 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.7091 1.3463 -0.0006
5 1 1.8903 2.3964 -1.2126
6 1 1.8904 2.3964 1.2124
7 6 2.0044 -1.1941 0.0005
8 1 3.0845 -1.1942 0.0001
9 6 1.2509 -2.4992 0.0005
10 6 2.2451 -3.6621 0.0018
11 6 1.4801 -4.9872 0.0012
12 1 0.7889 -5.0072 -0.8413
13 7 0.7271 -5.1183 1.2557
14 6 2.4548 -6.1299 -0.1214
15 8 2.7856 -6.7533 0.8649
16 7 2.9589 -6.4592 -1.3272
17 6 3.9110 -7.5662 -1.4455
18 6 4.3233 -7.7224 -2.8867
19 6 3.6087 -8.5595 -3.7230
20 6 3.9839 -8.6992 -5.0462
21 6 5.0799 -8.0097 -5.5302
22 6 5.4926 -8.1666 -6.9711
23 7 6.4447 -9.2738 -7.0885
24 6 6.1379 -10.5881 -7.3165
25 6 7.3043 -11.2603 -7.3509
26 7 8.2964 -10.3803 -7.1500
27 6 7.7893 -9.1874 -6.9980
28 6 5.7975 -7.1765 -4.6925
29 6 5.4192 -7.0329 -3.3707
30 1 -0.4850 0.8400 -0.0004
31 1 0.6246 -2.5571 -0.8896
32 1 0.6239 -2.5567 0.8903
33 1 2.8712 -3.6040 0.8921
34 1 2.8724 -3.6048 -0.8878
35 1 0.1627 -5.9547 1.2529
36 1 1.3461 -5.1025 2.0524
37 1 2.6946 -5.9604 -2.1161
38 1 4.7906 -7.3557 -0.8369
39 1 3.4420 -8.4875 -1.0999
40 1 2.7553 -9.1019 -3.3436
41 1 3.4234 -9.3503 -5.7006
42 1 4.6134 -8.3773 -7.5800
43 1 5.9619 -7.2456 -7.3170
44 1 5.1502 -11.0059 -7.4442
45 1 7.4206 -12.3218 -7.5128
46 1 8.3517 -8.2816 -6.8256
47 1 6.6541 -6.6381 -5.0707
48 1 5.9803 -6.3826 -2.7161
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000424145946.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:40:02
Heat of formation + Delta-G solvation = 16.114835 kcal
Electronic energy + Delta-G solvation = -27843.219210 eV
Core-core repulsion = 23897.412841 eV
Total energy + Delta-G solvation = -3945.806369 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 1.14 seconds
Orbital eigenvalues (eV)
-42.91688 -41.19475 -40.29949 -36.98208 -36.47483 -35.07744 -34.80909 -32.37336
-31.97974 -31.91986 -30.33380 -29.11100 -27.85444 -26.08636 -24.72690 -23.84384
-22.44203 -22.22445 -22.12592 -21.59949 -21.18223 -18.81372 -18.41312 -18.10239
-17.67375 -17.10601 -16.94747 -16.68799 -16.45591 -16.10549 -15.76673 -15.56834
-15.25619 -15.13077 -14.91070 -14.79622 -14.43397 -14.28708 -14.19465 -13.96155
-13.85718 -13.72233 -13.41450 -13.34633 -13.08104 -12.82590 -12.51901 -12.35365
-12.24149 -11.99476 -11.78057 -11.66496 -11.25842 -11.00851 -10.94021 -10.58618
-10.49504 -10.21266 -9.93935 -9.92429 -9.54724 -9.41122 -8.13771 -6.23783
0.02940 0.40187 1.19089 1.41215 1.42502 1.48678 1.54853 1.92099
2.25325 2.26435 2.44676 2.86237 3.19401 3.50679 3.57773 3.66291
3.74465 3.88043 3.90332 3.93557 4.01995 4.10643 4.11315 4.31198
4.33972 4.39814 4.53840 4.59139 4.60542 4.68811 4.78168 4.81581
4.90700 4.94570 5.05118 5.25284 5.29808 5.29983 5.32478 5.51856
5.55519 5.57854 5.85079 5.86068 5.93051 5.99186 6.09579 6.30783
6.31118 6.42169 6.53181 6.95166 7.10388 7.18415 7.44326 8.97539
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.013239 B = 0.001882 C = 0.001717
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2114.496398 B =14874.017041 C =16307.014938
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.929 5.929
2 C 0.001 3.999
3 Si 0.959 3.041
4 H -0.264 1.264
5 H -0.277 1.277
6 H -0.282 1.282
7 C -0.542 4.542
8 H 0.055 0.945
9 C 0.038 3.962
10 C -0.081 4.081
11 C 0.086 3.914
12 H 0.111 0.889
13 N -0.819 5.819
14 C 0.490 3.510
15 O -0.583 6.583
16 N -0.710 5.710
17 C 0.161 3.839
18 C -0.103 4.103
19 C -0.108 4.108
20 C -0.101 4.101
21 C -0.111 4.111
22 C 0.146 3.854
23 N -0.451 5.451
24 C -0.046 4.046
25 C -0.065 4.065
26 N -0.543 5.543
27 C 0.175 3.825
28 C -0.104 4.104
29 C -0.112 4.112
30 H 0.262 0.738
31 H -0.005 1.005
32 H 0.006 0.994
33 H 0.042 0.958
34 H 0.067 0.933
35 H 0.347 0.653
36 H 0.345 0.655
37 H 0.413 0.587
38 H 0.064 0.936
39 H 0.072 0.928
40 H 0.134 0.866
41 H 0.146 0.854
42 H 0.123 0.877
43 H 0.124 0.876
44 H 0.200 0.800
45 H 0.175 0.825
46 H 0.224 0.776
47 H 0.144 0.856
48 H 0.127 0.873
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.594 -21.104 -17.768 29.209
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.569 5.569
2 C -0.196 4.196
3 Si 0.784 3.216
4 H -0.188 1.188
5 H -0.203 1.203
6 H -0.208 1.208
7 C -0.580 4.580
8 H 0.074 0.926
9 C 0.001 3.999
10 C -0.120 4.120
11 C -0.029 4.029
12 H 0.129 0.871
13 N -0.348 5.348
14 C 0.275 3.725
15 O -0.463 6.463
16 N -0.362 5.362
17 C 0.037 3.963
18 C -0.103 4.103
19 C -0.127 4.127
20 C -0.120 4.120
21 C -0.112 4.112
22 C 0.025 3.975
23 N -0.132 5.132
24 C -0.180 4.180
25 C -0.211 4.211
26 N -0.262 5.262
27 C -0.108 4.108
28 C -0.122 4.122
29 C -0.131 4.131
30 H 0.070 0.930
31 H 0.014 0.986
32 H 0.024 0.976
33 H 0.060 0.940
34 H 0.086 0.914
35 H 0.160 0.840
36 H 0.159 0.841
37 H 0.249 0.751
38 H 0.083 0.917
39 H 0.091 0.909
40 H 0.152 0.848
41 H 0.164 0.836
42 H 0.141 0.859
43 H 0.142 0.858
44 H 0.217 0.783
45 H 0.192 0.808
46 H 0.241 0.759
47 H 0.162 0.838
48 H 0.145 0.855
Dipole moment (debyes) X Y Z Total
from point charges 10.062 -20.839 -17.249 28.862
hybrid contribution -0.135 0.387 0.235 0.472
sum 9.926 -20.452 -17.014 28.395
Atomic orbital electron populations
1.70104 1.07597 1.27419 1.51816 1.25893 0.95703 1.03002 0.95048
0.85494 0.79078 0.79335 0.77684 1.18812 1.20267 1.20787 1.21761
0.93355 0.92727 1.50200 0.92627 1.18840 0.93907 0.91333 0.95822
1.21387 0.97719 0.92101 1.00773 1.21636 0.93696 0.92019 0.95578
0.87122 1.58976 1.27225 1.45312 1.03297 1.22397 0.81930 0.85263
0.82910 1.90646 1.62125 1.55273 1.38233 1.46112 1.45495 1.34821
1.09818 1.20176 0.92680 0.90210 0.93196 1.19851 0.97017 0.98920
0.94562 1.21256 0.99614 0.97975 0.93843 1.21296 0.96549 0.98655
0.95474 1.20148 0.96585 0.98392 0.96099 1.20987 0.93862 0.89560
0.93079 1.45753 1.07551 1.08134 1.51810 1.23152 1.01845 0.83672
1.09313 1.22634 0.88940 1.00421 1.09125 1.70245 1.34258 1.00984
1.20719 1.25461 0.81545 0.98908 1.04854 1.21301 0.99734 0.98140
0.93055 1.21259 0.96530 0.98890 0.96426 0.92956 0.98649 0.97595
0.93964 0.91423 0.83997 0.84139 0.75061 0.91731 0.90931 0.84797
0.83606 0.85879 0.85766 0.78296 0.80820 0.75923 0.83837 0.85515
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -56.02 13.28 21.45 0.28 -55.74 16
2 C 0.00 0.08 5.46 84.66 0.46 0.54 16
3 Si 0.96 43.91 29.54 68.60 2.03 45.94 16
4 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16
5 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16
6 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16
7 C -0.54 -30.38 9.11 25.60 0.23 -30.15 16
8 H 0.06 3.00 7.74 -2.91 -0.02 2.98 16
9 C 0.04 1.95 4.86 29.85 0.15 2.09 16
10 C -0.08 -3.19 4.78 30.60 0.15 -3.04 16
11 C 0.09 2.76 3.15 44.17 0.14 2.90 16
12 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16
13 N -0.82 -27.08 8.44 -171.81 -1.45 -28.53 16
14 C 0.49 14.37 7.07 87.66 0.62 14.99 16
15 O -0.58 -20.64 16.25 -3.04 -0.05 -20.69 16
16 N -0.71 -15.80 5.55 -466.78 -2.59 -18.39 16
17 C 0.16 3.20 5.80 85.63 0.50 3.69 16
18 C -0.10 -1.63 5.25 -19.87 -0.10 -1.73 16
19 C -0.11 -1.42 9.70 22.27 0.22 -1.20 16
20 C -0.10 -1.00 9.70 22.27 0.22 -0.79 16
21 C -0.11 -1.03 5.46 -19.86 -0.11 -1.14 16
22 C 0.15 0.71 6.28 85.64 0.54 1.25 16
23 N -0.45 -4.69 2.73 -533.15 -1.46 -6.15 16
24 C -0.05 -0.53 11.58 83.09 0.96 0.43 16
25 C -0.06 -1.08 11.87 83.52 0.99 -0.09 16
26 N -0.54 -11.33 11.25 -200.31 -2.25 -13.58 16
27 C 0.17 2.50 12.56 180.26 2.26 4.77 16
28 C -0.10 -1.17 9.70 22.27 0.22 -0.96 16
29 C -0.11 -1.68 9.70 22.27 0.22 -1.46 16
30 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16
31 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16
32 H 0.01 0.32 7.75 -2.38 -0.02 0.30 16
33 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16
34 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16
35 H 0.35 9.76 9.06 -89.69 -0.81 8.94 16
36 H 0.35 11.74 8.58 -89.69 -0.77 10.97 16
37 H 0.41 7.80 8.46 -92.71 -0.78 7.02 16
38 H 0.06 1.44 8.09 -2.38 -0.02 1.42 16
39 H 0.07 1.48 8.08 -2.39 -0.02 1.46 16
40 H 0.13 1.50 8.06 -2.91 -0.02 1.48 16
41 H 0.15 0.76 8.06 -2.91 -0.02 0.73 16
42 H 0.12 0.13 8.09 -2.39 -0.02 0.11 16
43 H 0.12 0.16 8.09 -2.39 -0.02 0.14 16
44 H 0.20 0.95 8.06 -2.91 -0.02 0.93 16
45 H 0.17 2.32 8.06 -2.91 -0.02 2.29 16
46 H 0.22 1.75 8.06 -2.91 -0.02 1.73 16
47 H 0.14 1.03 8.06 -2.91 -0.02 1.01 16
48 H 0.13 1.88 8.06 -2.91 -0.02 1.85 16
Total: -1.00 -77.77 411.62 0.78 -76.99
By element:
Atomic # 1 Polarization: 31.42 SS G_CDS: -1.38 Total: 30.05 kcal
Atomic # 6 Polarization: -17.55 SS G_CDS: 7.65 Total: -9.90 kcal
Atomic # 7 Polarization: -114.92 SS G_CDS: -7.47 Total: -122.38 kcal
Atomic # 8 Polarization: -20.64 SS G_CDS: -0.05 Total: -20.69 kcal
Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal
Total: -77.77 0.78 -76.99 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000424145946.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 93.107 kcal
(2) G-P(sol) polarization free energy of solvation -77.774 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.332 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.782 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.992 kcal
(6) G-S(sol) free energy of system = (1) + (5) 16.115 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.14 seconds