Wall clock time and date at job start Sat Apr 11 2020 06:40:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86800 * 119.99911 * 2 1
4 4 H 1.48497 * 109.47050 * 240.00009 * 3 2 1
5 5 H 1.48496 * 109.47289 * 0.02562 * 3 2 1
6 6 H 1.48504 * 109.46492 * 119.99983 * 3 2 1
7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3
8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1
9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1
10 10 C 1.52998 * 109.47348 * 179.72505 * 9 7 2
11 11 C 1.52996 * 109.46929 * 179.97438 * 10 9 7
12 12 H 1.09006 * 109.47486 * 304.99942 * 11 10 9
13 13 N 1.46899 * 109.47415 * 65.00517 * 11 10 9
14 14 C 1.50700 * 109.47032 * 185.00304 * 11 10 9
15 15 O 1.21287 * 120.00103 * 260.00250 * 14 11 10
16 16 N 1.34778 * 120.00347 * 79.99627 * 14 11 10
17 17 C 1.47426 * 125.64836 * 359.69877 * 16 14 11
18 18 C 1.55121 * 104.72475 * 155.81306 * 17 16 14
19 19 C 1.55155 * 101.48844 * 37.29419 * 18 17 16
20 20 H 1.08999 * 110.72040 * 82.69163 * 19 18 17
21 21 N 1.46500 * 110.87646 * 205.89718 * 19 18 17
22 22 N 1.39877 * 125.45705 * 53.63387 * 21 19 18
23 23 C 1.30244 * 110.08512 * 179.97438 * 22 21 19
24 24 C 1.45931 * 107.78185 * 0.02562 * 23 22 21
25 25 C 1.39950 * 134.03237 * 180.02562 * 24 23 22
26 26 C 1.36467 * 119.63535 * 179.97438 * 25 24 23
27 27 C 1.38971 * 120.62893 * 0.02562 * 26 25 24
28 28 C 1.36583 * 120.81634 * 359.95646 * 27 26 25
29 29 C 1.37031 * 125.46249 * 233.32777 * 21 19 18
30 30 C 1.47022 * 125.65148 * 180.02562 * 16 14 11
31 31 H 0.97004 * 120.00247 * 359.97438 * 1 2 3
32 32 H 1.09001 * 109.46564 * 299.72974 * 9 7 2
33 33 H 1.08998 * 109.47012 * 59.72028 * 9 7 2
34 34 H 1.09000 * 109.46986 * 300.00089 * 10 9 7
35 35 H 1.09002 * 109.46857 * 60.00224 * 10 9 7
36 36 H 1.00897 * 111.00222 * 59.99157 * 13 11 10
37 37 H 1.00891 * 111.00353 * 183.95337 * 13 11 10
38 38 H 1.08998 * 110.36467 * 274.74507 * 17 16 14
39 39 H 1.09001 * 110.36356 * 37.06399 * 17 16 14
40 40 H 1.09006 * 111.19294 * 279.19390 * 18 17 16
41 41 H 1.09004 * 110.90897 * 155.27326 * 18 17 16
42 42 H 1.07998 * 126.11235 * 180.02562 * 23 22 21
43 43 H 1.07995 * 120.18345 * 359.92596 * 25 24 23
44 44 H 1.07995 * 119.68572 * 179.97438 * 26 25 24
45 45 H 1.08005 * 119.58978 * 179.97438 * 27 26 25
46 46 H 1.07993 * 120.07889 * 180.02562 * 28 27 26
47 47 H 1.09006 * 109.87813 * 300.44560 * 30 16 14
48 48 H 1.08999 * 109.88357 * 61.60504 * 30 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.1028 1.6964 -1.2125
5 1 1.2842 2.7464 0.0006
6 1 3.1028 1.6963 1.2126
7 6 2.0044 -1.1940 -0.0005
8 1 3.0844 -1.1941 -0.0050
9 6 1.2509 -2.4992 -0.0005
10 6 2.2451 -3.6621 -0.0081
11 6 1.4801 -4.9871 -0.0075
12 1 0.7920 -5.0090 0.8377
13 7 0.7223 -5.1156 -1.2593
14 6 2.4552 -6.1301 0.1090
15 8 2.7823 -6.7514 -0.8799
16 7 2.9640 -6.4620 1.3121
17 6 2.6592 -5.7907 2.5888
18 6 2.9476 -6.8597 3.6751
19 6 4.1951 -7.5699 3.0863
20 1 5.1024 -7.0135 3.3211
21 7 4.2921 -8.9469 3.5770
22 7 3.2807 -9.9099 3.4973
23 6 3.6868 -11.0297 4.0240
24 6 5.0538 -10.8309 4.4946
25 6 5.9924 -11.6510 5.1311
26 6 7.2215 -11.1499 5.4480
27 6 7.5491 -9.8338 5.1451
28 6 6.6503 -9.0142 4.5239
29 6 5.3902 -9.4996 4.1823
30 6 3.9202 -7.5492 1.5678
31 1 -0.4851 0.8401 0.0004
32 1 0.6283 -2.5592 0.8921
33 1 0.6202 -2.5546 -0.8878
34 1 2.8677 -3.6020 -0.9008
35 1 2.8758 -3.6067 0.8792
36 1 1.3382 -5.0980 -2.0583
37 1 0.1579 -5.9519 -1.2562
38 1 3.3056 -4.9237 2.7253
39 1 1.6113 -5.4922 2.6196
40 1 2.1137 -7.5544 3.7756
41 1 3.1803 -6.3901 4.6309
42 1 3.1143 -11.9423 4.0991
43 1 5.7450 -12.6745 5.3709
44 1 7.9462 -11.7819 5.9396
45 1 8.5267 -9.4544 5.4039
46 1 6.9176 -7.9935 4.2937
47 1 3.4909 -8.5013 1.2559
48 1 4.8472 -7.3628 1.0256
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000424178567.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:40:26
Heat of formation + Delta-G solvation = 54.464424 kcal
Electronic energy + Delta-G solvation = -29048.559021 eV
Core-core repulsion = 25104.415615 eV
Total energy + Delta-G solvation = -3944.143406 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 1.15 seconds
Orbital eigenvalues (eV)
-41.70071 -40.16157 -38.07299 -37.19691 -35.23832 -33.65649 -32.81011 -31.45621
-30.26508 -30.11465 -29.88438 -28.57227 -26.35615 -24.50500 -23.42641 -22.78292
-22.63269 -22.33997 -20.38941 -20.05183 -19.15902 -17.99938 -17.35628 -16.97511
-16.38394 -16.03197 -15.61750 -15.61248 -15.33569 -15.21016 -14.59124 -14.48343
-14.40066 -14.03003 -13.84961 -13.79377 -13.51280 -12.93778 -12.66906 -12.59811
-12.38119 -12.30730 -12.03301 -11.99606 -11.84635 -11.65035 -11.46365 -11.35308
-10.94325 -10.88399 -10.68323 -10.58236 -10.38748 -10.14741 -9.80134 -9.39044
-9.04891 -9.03062 -8.75134 -8.39219 -8.26722 -8.20374 -5.95035 -3.97424
0.58772 1.13715 1.88280 2.16377 2.72377 2.96998 3.34558 3.39477
3.41595 3.42262 3.92181 4.04669 4.10453 4.28189 4.42968 4.48432
4.56533 4.60684 4.76992 4.80953 4.88476 4.97270 4.99348 5.05124
5.25725 5.31923 5.35021 5.39963 5.41438 5.51645 5.56296 5.59446
5.64676 5.79912 5.82256 5.96933 6.08792 6.14548 6.15244 6.41268
6.44926 6.63467 6.68804 7.05403 7.28850 7.33670 7.50509 7.73786
7.77552 7.94353 8.11583 8.21062 8.46645 9.10208 9.65656 11.15736
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.017618 B = 0.002142 C = 0.002002
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1588.859271 B =13071.573491 C =13979.823396
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.892 5.892
2 C 0.058 3.942
3 Si 0.889 3.111
4 H -0.278 1.278
5 H -0.288 1.288
6 H -0.278 1.278
7 C -0.523 4.523
8 H 0.051 0.949
9 C 0.032 3.968
10 C -0.095 4.095
11 C 0.083 3.917
12 H 0.098 0.902
13 N -0.806 5.806
14 C 0.500 3.500
15 O -0.551 6.551
16 N -0.615 5.615
17 C 0.099 3.901
18 C -0.138 4.138
19 C 0.158 3.842
20 H 0.118 0.882
21 N -0.396 5.396
22 N -0.243 5.243
23 C 0.071 3.929
24 C -0.182 4.182
25 C -0.040 4.040
26 C -0.162 4.162
27 C -0.070 4.070
28 C -0.141 4.141
29 C 0.130 3.870
30 C 0.100 3.900
31 H 0.260 0.740
32 H 0.013 0.987
33 H 0.035 0.965
34 H 0.053 0.947
35 H 0.053 0.947
36 H 0.348 0.652
37 H 0.334 0.666
38 H 0.083 0.917
39 H 0.091 0.909
40 H 0.092 0.908
41 H 0.092 0.908
42 H 0.197 0.803
43 H 0.127 0.873
44 H 0.125 0.875
45 H 0.129 0.871
46 H 0.125 0.875
47 H 0.078 0.922
48 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.865 -23.861 14.001 30.103
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.531 5.531
2 C -0.143 4.143
3 Si 0.717 3.283
4 H -0.203 1.203
5 H -0.213 1.213
6 H -0.204 1.204
7 C -0.561 4.561
8 H 0.069 0.931
9 C -0.005 4.005
10 C -0.133 4.133
11 C -0.032 4.032
12 H 0.116 0.884
13 N -0.334 5.334
14 C 0.289 3.711
15 O -0.428 6.428
16 N -0.351 5.351
17 C -0.024 4.024
18 C -0.177 4.177
19 C 0.055 3.945
20 H 0.136 0.864
21 N -0.183 5.183
22 N -0.054 5.054
23 C -0.127 4.127
24 C -0.190 4.190
25 C -0.060 4.060
26 C -0.182 4.182
27 C -0.090 4.090
28 C -0.163 4.163
29 C 0.016 3.984
30 C -0.024 4.024
31 H 0.070 0.930
32 H 0.031 0.969
33 H 0.054 0.946
34 H 0.071 0.929
35 H 0.072 0.928
36 H 0.162 0.838
37 H 0.146 0.854
38 H 0.101 0.899
39 H 0.110 0.890
40 H 0.111 0.889
41 H 0.111 0.889
42 H 0.213 0.787
43 H 0.145 0.855
44 H 0.143 0.857
45 H 0.147 0.853
46 H 0.143 0.857
47 H 0.096 0.904
48 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges 10.464 -22.559 12.915 28.021
hybrid contribution 1.776 -0.369 0.315 1.841
sum 12.239 -22.928 13.229 29.163
Atomic orbital electron populations
1.69963 1.05932 1.26541 1.50673 1.24991 0.94814 0.99038 0.95482
0.86711 0.79608 0.83442 0.78511 1.20327 1.21329 1.20385 1.21224
0.92821 0.91296 1.50778 0.93075 1.19006 0.93521 0.89746 0.98199
1.21656 0.98892 0.92074 1.00671 1.21838 0.93258 0.93012 0.95119
0.88412 1.59023 1.26786 1.44288 1.03278 1.22618 0.81943 0.85738
0.80824 1.90660 1.61516 1.54676 1.35993 1.48550 1.45389 1.33322
1.07864 1.22484 1.03204 0.95217 0.81505 1.23230 0.97567 0.98092
0.98807 1.22222 1.01042 0.77425 0.93823 0.86440 1.48250 1.08585
1.09937 1.51555 1.76622 1.12329 0.97912 1.18544 1.25126 0.93150
0.97077 0.97320 1.19958 0.95934 0.94311 1.08818 1.20360 0.92013
0.98724 0.94904 1.20681 0.97182 0.96103 1.04243 1.20742 0.98750
0.93570 0.95968 1.19872 0.91129 1.00869 1.04413 1.18861 0.89984
0.93289 0.96268 1.22121 0.94076 0.92621 0.93580 0.93028 0.96901
0.94647 0.92853 0.92840 0.83789 0.85392 0.89900 0.89025 0.88908
0.88921 0.78666 0.85470 0.85653 0.85333 0.85728 0.90391 0.90933
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16
2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16
3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16
4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16
6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16
8 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16
9 C 0.03 0.82 4.86 -27.88 -0.14 0.68 16
10 C -0.09 -1.91 4.77 -26.73 -0.13 -2.03 16
11 C 0.08 1.43 2.56 -68.87 -0.18 1.26 16
12 H 0.10 1.59 6.92 -51.93 -0.36 1.23 16
13 N -0.81 -13.96 8.44 -5.65 -0.05 -14.01 16
14 C 0.50 8.38 7.09 -10.98 -0.08 8.30 16
15 O -0.55 -10.82 16.58 5.55 0.09 -10.73 16
16 N -0.62 -8.42 3.32 -170.38 -0.57 -8.98 16
17 C 0.10 1.07 6.23 -2.41 -0.02 1.06 16
18 C -0.14 -1.26 6.74 -24.47 -0.16 -1.43 16
19 C 0.16 1.53 3.77 -66.10 -0.25 1.28 16
20 H 0.12 0.91 7.52 -51.93 -0.39 0.52 16
21 N -0.40 -4.22 3.44 -50.47 -0.17 -4.40 16
22 N -0.24 -2.75 11.70 31.87 0.37 -2.38 16
23 C 0.07 0.63 12.28 -15.15 -0.19 0.44 16
24 C -0.18 -1.67 6.37 -105.20 -0.67 -2.34 16
25 C -0.04 -0.28 10.07 -39.58 -0.40 -0.68 16
26 C -0.16 -1.04 9.97 -39.95 -0.40 -1.43 16
27 C -0.07 -0.47 9.96 -39.91 -0.40 -0.86 16
28 C -0.14 -1.14 9.81 -39.79 -0.39 -1.54 16
29 C 0.13 1.30 6.87 -84.17 -0.58 0.73 16
30 C 0.10 1.25 6.60 -3.06 -0.02 1.23 16
31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16
32 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16
33 H 0.04 0.98 7.75 -51.93 -0.40 0.57 16
34 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16
35 H 0.05 1.00 7.38 -51.93 -0.38 0.62 16
36 H 0.35 6.11 8.58 -39.29 -0.34 5.78 16
37 H 0.33 5.09 9.06 -39.30 -0.36 4.73 16
38 H 0.08 0.86 7.86 -51.93 -0.41 0.45 16
39 H 0.09 0.99 6.92 -51.93 -0.36 0.63 16
40 H 0.09 0.96 7.81 -51.93 -0.41 0.56 16
41 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16
42 H 0.20 1.00 8.06 -52.49 -0.42 0.57 16
43 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16
44 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16
45 H 0.13 0.56 8.06 -52.48 -0.42 0.13 16
46 H 0.12 0.81 7.67 -52.49 -0.40 0.41 16
47 H 0.08 1.12 7.77 -51.93 -0.40 0.72 16
48 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16
LS Contribution 396.24 15.07 5.97 5.97
Total: -1.00 -34.91 396.24 -10.16 -45.08
By element:
Atomic # 1 Polarization: 14.71 SS G_CDS: -7.13 Total: 7.57 kcal
Atomic # 6 Polarization: -4.31 SS G_CDS: -4.40 Total: -8.71 kcal
Atomic # 7 Polarization: -56.08 SS G_CDS: 0.32 Total: -55.76 kcal
Atomic # 8 Polarization: -10.82 SS G_CDS: 0.09 Total: -10.73 kcal
Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal
Total LS contribution 5.97 Total: 5.97 kcal
Total: -34.91 -10.16 -45.08 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000424178567.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 99.540 kcal
(2) G-P(sol) polarization free energy of solvation -34.911 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.629 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.165 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.076 kcal
(6) G-S(sol) free energy of system = (1) + (5) 54.464 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.16 seconds