Wall clock time and date at job start Sat Apr 11 2020 06:40:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86800 * 119.99911 * 2 1
4 4 H 1.48497 * 109.47050 * 240.00009 * 3 2 1
5 5 H 1.48496 * 109.47289 * 0.02562 * 3 2 1
6 6 H 1.48504 * 109.46492 * 119.99983 * 3 2 1
7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3
8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1
9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1
10 10 C 1.52998 * 109.47348 * 179.72505 * 9 7 2
11 11 C 1.52996 * 109.46929 * 179.97438 * 10 9 7
12 12 H 1.09006 * 109.47486 * 304.99942 * 11 10 9
13 13 N 1.46899 * 109.47415 * 65.00517 * 11 10 9
14 14 C 1.50700 * 109.47032 * 185.00304 * 11 10 9
15 15 O 1.21287 * 120.00103 * 260.00250 * 14 11 10
16 16 N 1.34778 * 120.00347 * 79.99627 * 14 11 10
17 17 C 1.47426 * 125.64836 * 359.69877 * 16 14 11
18 18 C 1.55121 * 104.72475 * 155.81306 * 17 16 14
19 19 C 1.55155 * 101.48844 * 37.29419 * 18 17 16
20 20 H 1.08999 * 110.72040 * 82.69163 * 19 18 17
21 21 N 1.46500 * 110.87646 * 205.89718 * 19 18 17
22 22 N 1.39877 * 125.45705 * 53.63387 * 21 19 18
23 23 C 1.30244 * 110.08512 * 179.97438 * 22 21 19
24 24 C 1.45931 * 107.78185 * 0.02562 * 23 22 21
25 25 C 1.39950 * 134.03237 * 180.02562 * 24 23 22
26 26 C 1.36467 * 119.63535 * 179.97438 * 25 24 23
27 27 C 1.38971 * 120.62893 * 0.02562 * 26 25 24
28 28 C 1.36583 * 120.81634 * 359.95646 * 27 26 25
29 29 C 1.37031 * 125.46249 * 233.32777 * 21 19 18
30 30 C 1.47022 * 125.65148 * 180.02562 * 16 14 11
31 31 H 0.97004 * 120.00247 * 359.97438 * 1 2 3
32 32 H 1.09001 * 109.46564 * 299.72974 * 9 7 2
33 33 H 1.08998 * 109.47012 * 59.72028 * 9 7 2
34 34 H 1.09000 * 109.46986 * 300.00089 * 10 9 7
35 35 H 1.09002 * 109.46857 * 60.00224 * 10 9 7
36 36 H 1.00897 * 111.00222 * 59.99157 * 13 11 10
37 37 H 1.00891 * 111.00353 * 183.95337 * 13 11 10
38 38 H 1.08998 * 110.36467 * 274.74507 * 17 16 14
39 39 H 1.09001 * 110.36356 * 37.06399 * 17 16 14
40 40 H 1.09006 * 111.19294 * 279.19390 * 18 17 16
41 41 H 1.09004 * 110.90897 * 155.27326 * 18 17 16
42 42 H 1.07998 * 126.11235 * 180.02562 * 23 22 21
43 43 H 1.07995 * 120.18345 * 359.92596 * 25 24 23
44 44 H 1.07995 * 119.68572 * 179.97438 * 26 25 24
45 45 H 1.08005 * 119.58978 * 179.97438 * 27 26 25
46 46 H 1.07993 * 120.07889 * 180.02562 * 28 27 26
47 47 H 1.09006 * 109.87813 * 300.44560 * 30 16 14
48 48 H 1.08999 * 109.88357 * 61.60504 * 30 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.1028 1.6964 -1.2125
5 1 1.2842 2.7464 0.0006
6 1 3.1028 1.6963 1.2126
7 6 2.0044 -1.1940 -0.0005
8 1 3.0844 -1.1941 -0.0050
9 6 1.2509 -2.4992 -0.0005
10 6 2.2451 -3.6621 -0.0081
11 6 1.4801 -4.9871 -0.0075
12 1 0.7920 -5.0090 0.8377
13 7 0.7223 -5.1156 -1.2593
14 6 2.4552 -6.1301 0.1090
15 8 2.7823 -6.7514 -0.8799
16 7 2.9640 -6.4620 1.3121
17 6 2.6592 -5.7907 2.5888
18 6 2.9476 -6.8597 3.6751
19 6 4.1951 -7.5699 3.0863
20 1 5.1024 -7.0135 3.3211
21 7 4.2921 -8.9469 3.5770
22 7 3.2807 -9.9099 3.4973
23 6 3.6868 -11.0297 4.0240
24 6 5.0538 -10.8309 4.4946
25 6 5.9924 -11.6510 5.1311
26 6 7.2215 -11.1499 5.4480
27 6 7.5491 -9.8338 5.1451
28 6 6.6503 -9.0142 4.5239
29 6 5.3902 -9.4996 4.1823
30 6 3.9202 -7.5492 1.5678
31 1 -0.4851 0.8401 0.0004
32 1 0.6283 -2.5592 0.8921
33 1 0.6202 -2.5546 -0.8878
34 1 2.8677 -3.6020 -0.9008
35 1 2.8758 -3.6067 0.8792
36 1 1.3382 -5.0980 -2.0583
37 1 0.1579 -5.9519 -1.2562
38 1 3.3056 -4.9237 2.7253
39 1 1.6113 -5.4922 2.6196
40 1 2.1137 -7.5544 3.7756
41 1 3.1803 -6.3901 4.6309
42 1 3.1143 -11.9423 4.0991
43 1 5.7450 -12.6745 5.3709
44 1 7.9462 -11.7819 5.9396
45 1 8.5267 -9.4544 5.4039
46 1 6.9176 -7.9935 4.2937
47 1 3.4909 -8.5013 1.2559
48 1 4.8472 -7.3628 1.0256
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000424178567.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:40:25
Heat of formation + Delta-G solvation = 31.573127 kcal
Electronic energy + Delta-G solvation = -29049.551662 eV
Core-core repulsion = 25104.415615 eV
Total energy + Delta-G solvation = -3945.136047 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 1.02 seconds
Orbital eigenvalues (eV)
-42.35651 -41.34733 -39.03760 -37.88989 -36.85967 -34.84456 -34.45116 -32.23954
-31.93770 -30.88166 -30.64852 -29.50536 -27.95791 -25.94583 -24.21331 -23.99415
-23.40052 -22.92520 -22.12172 -20.78118 -20.40452 -18.82532 -18.55069 -18.16811
-17.69249 -17.21102 -16.97622 -16.63971 -16.36410 -16.11337 -15.94735 -15.43372
-15.30915 -15.21157 -14.92868 -14.47957 -14.34519 -14.30217 -14.16280 -13.70781
-13.66656 -13.46211 -13.24536 -13.00725 -12.77877 -12.72667 -12.56554 -12.50761
-12.35704 -12.21689 -11.88480 -11.79084 -11.67157 -11.60763 -11.28054 -11.04963
-11.01440 -10.48009 -9.90119 -9.72790 -9.64202 -8.85844 -8.12817 -6.23107
0.02550 0.57307 1.17232 1.38144 1.42875 1.45201 1.52875 1.53506
1.87393 2.45129 2.87123 3.14774 3.20152 3.21071 3.43565 3.49964
3.65352 3.69063 3.82190 3.85608 3.98197 4.08425 4.12912 4.17025
4.25258 4.34222 4.43721 4.50993 4.59184 4.61711 4.71911 4.73888
4.78097 4.90179 4.93325 5.03971 5.07026 5.12339 5.22647 5.45135
5.57372 5.57579 5.64053 5.83697 5.91054 5.98312 6.01540 6.08921
6.25471 6.30406 6.43674 6.63275 6.90661 6.94881 7.44828 8.98090
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.017618 B = 0.002142 C = 0.002002
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1588.859271 B =13071.573491 C =13979.823396
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.929 5.929
2 C 0.001 3.999
3 Si 0.959 3.041
4 H -0.272 1.272
5 H -0.285 1.285
6 H -0.264 1.264
7 C -0.542 4.542
8 H 0.056 0.944
9 C 0.041 3.959
10 C -0.079 4.079
11 C 0.092 3.908
12 H 0.109 0.891
13 N -0.817 5.817
14 C 0.502 3.498
15 O -0.585 6.585
16 N -0.610 5.610
17 C 0.092 3.908
18 C -0.125 4.125
19 C 0.165 3.835
20 H 0.141 0.859
21 N -0.406 5.406
22 N -0.285 5.285
23 C 0.076 3.924
24 C -0.203 4.203
25 C -0.043 4.043
26 C -0.165 4.165
27 C -0.068 4.068
28 C -0.158 4.158
29 C 0.108 3.892
30 C 0.102 3.898
31 H 0.262 0.738
32 H -0.004 1.004
33 H 0.004 0.996
34 H 0.041 0.959
35 H 0.070 0.930
36 H 0.346 0.654
37 H 0.346 0.654
38 H 0.096 0.904
39 H 0.093 0.907
40 H 0.079 0.921
41 H 0.118 0.882
42 H 0.226 0.774
43 H 0.152 0.848
44 H 0.151 0.849
45 H 0.154 0.846
46 H 0.136 0.864
47 H 0.054 0.946
48 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.107 -24.331 16.129 32.421
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.569 5.569
2 C -0.196 4.196
3 Si 0.784 3.216
4 H -0.197 1.197
5 H -0.211 1.211
6 H -0.189 1.189
7 C -0.580 4.580
8 H 0.075 0.925
9 C 0.004 3.996
10 C -0.118 4.118
11 C -0.023 4.023
12 H 0.127 0.873
13 N -0.345 5.345
14 C 0.290 3.710
15 O -0.466 6.466
16 N -0.344 5.344
17 C -0.030 4.030
18 C -0.163 4.163
19 C 0.062 3.938
20 H 0.159 0.841
21 N -0.195 5.195
22 N -0.096 5.096
23 C -0.122 4.122
24 C -0.211 4.211
25 C -0.064 4.064
26 C -0.184 4.184
27 C -0.088 4.088
28 C -0.180 4.180
29 C -0.005 4.005
30 C -0.022 4.022
31 H 0.070 0.930
32 H 0.014 0.986
33 H 0.023 0.977
34 H 0.060 0.940
35 H 0.088 0.912
36 H 0.159 0.841
37 H 0.159 0.841
38 H 0.114 0.886
39 H 0.111 0.889
40 H 0.097 0.903
41 H 0.136 0.864
42 H 0.242 0.758
43 H 0.169 0.831
44 H 0.169 0.831
45 H 0.171 0.829
46 H 0.154 0.846
47 H 0.072 0.928
48 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges 12.722 -23.049 15.091 30.346
hybrid contribution 1.122 -0.340 -0.288 1.208
sum 13.845 -23.389 14.803 30.949
Atomic orbital electron populations
1.70101 1.07619 1.27550 1.51657 1.25900 0.95701 1.03015 0.95033
0.85596 0.78321 0.78618 0.79058 1.19743 1.21065 1.18901 1.21671
0.93335 0.92580 1.50426 0.92549 1.18807 0.93784 0.91189 0.95801
1.21380 0.97789 0.91742 1.00868 1.21627 0.93316 0.91881 0.95504
0.87316 1.59017 1.27046 1.45172 1.03301 1.22309 0.81851 0.85506
0.81350 1.90641 1.62665 1.55849 1.37409 1.48539 1.44608 1.33323
1.07948 1.22733 1.03647 0.96036 0.80541 1.23151 0.96883 0.97145
0.99171 1.22223 1.02193 0.77915 0.91452 0.84142 1.48224 1.08886
1.09979 1.52370 1.76569 1.13578 0.99012 1.20416 1.25707 0.93445
0.97342 0.95679 1.20284 0.96457 0.94614 1.09697 1.20714 0.91821
0.99686 0.94135 1.21079 0.97416 0.96360 1.03565 1.21137 0.99435
0.93620 0.94629 1.20148 0.90810 1.01894 1.05114 1.19251 0.90472
0.93966 0.96825 1.22141 0.93137 0.90912 0.95995 0.92960 0.98567
0.97738 0.94023 0.91158 0.84078 0.84120 0.88587 0.88915 0.90262
0.86397 0.75808 0.83067 0.83081 0.82864 0.84595 0.92758 0.91291
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -56.36 13.29 21.45 0.28 -56.07 16
2 C 0.00 0.08 5.46 84.65 0.46 0.54 16
3 Si 0.96 44.03 29.54 68.60 2.03 46.06 16
4 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16
5 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16
6 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16
7 C -0.54 -30.42 9.11 25.60 0.23 -30.19 16
8 H 0.06 3.03 7.74 -2.91 -0.02 3.01 16
9 C 0.04 2.14 4.86 29.85 0.15 2.28 16
10 C -0.08 -3.21 4.77 30.59 0.15 -3.07 16
11 C 0.09 3.20 2.56 44.17 0.11 3.31 16
12 H 0.11 3.52 6.92 -2.38 -0.02 3.50 16
13 N -0.82 -28.96 8.44 -171.80 -1.45 -30.41 16
14 C 0.50 16.94 7.09 87.66 0.62 17.56 16
15 O -0.59 -23.48 16.58 -3.05 -0.05 -23.53 16
16 N -0.61 -16.56 3.32 -811.35 -2.70 -19.26 16
17 C 0.09 1.89 6.23 86.93 0.54 2.44 16
18 C -0.12 -2.12 6.74 32.06 0.22 -1.91 16
19 C 0.17 3.07 3.77 46.18 0.17 3.24 16
20 H 0.14 1.91 7.52 -2.39 -0.02 1.89 16
21 N -0.41 -8.51 3.44 -313.59 -1.08 -9.59 16
22 N -0.28 -6.47 11.70 -53.09 -0.62 -7.09 16
23 C 0.08 1.30 12.28 86.92 1.07 2.36 16
24 C -0.20 -3.48 6.37 -20.24 -0.13 -3.61 16
25 C -0.04 -0.51 10.07 22.27 0.22 -0.29 16
26 C -0.16 -1.63 9.97 22.03 0.22 -1.41 16
27 C -0.07 -0.73 9.96 22.06 0.22 -0.51 16
28 C -0.16 -2.30 9.81 22.14 0.22 -2.08 16
29 C 0.11 2.07 6.87 39.22 0.27 2.34 16
30 C 0.10 2.57 6.60 86.73 0.57 3.14 16
31 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16
32 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16
33 H 0.00 0.24 7.75 -2.39 -0.02 0.22 16
34 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16
35 H 0.07 2.58 7.38 -2.39 -0.02 2.56 16
36 H 0.35 12.52 8.58 -89.70 -0.77 11.75 16
37 H 0.35 10.74 9.06 -89.70 -0.81 9.93 16
38 H 0.10 1.77 7.86 -2.39 -0.02 1.76 16
39 H 0.09 1.90 6.92 -2.39 -0.02 1.89 16
40 H 0.08 1.60 7.81 -2.38 -0.02 1.59 16
41 H 0.12 1.44 8.14 -2.38 -0.02 1.42 16
42 H 0.23 2.01 8.06 -2.91 -0.02 1.99 16
43 H 0.15 0.93 8.06 -2.91 -0.02 0.90 16
44 H 0.15 0.67 8.06 -2.91 -0.02 0.65 16
45 H 0.15 0.81 8.06 -2.91 -0.02 0.79 16
46 H 0.14 1.52 7.67 -2.91 -0.02 1.50 16
47 H 0.05 1.63 7.77 -2.38 -0.02 1.61 16
48 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16
Total: -1.00 -76.86 396.24 1.14 -75.72
By element:
Atomic # 1 Polarization: 30.61 SS G_CDS: -0.59 Total: 30.02 kcal
Atomic # 6 Polarization: -11.16 SS G_CDS: 5.31 Total: -5.85 kcal
Atomic # 7 Polarization: -116.86 SS G_CDS: -5.56 Total: -122.43 kcal
Atomic # 8 Polarization: -23.48 SS G_CDS: -0.05 Total: -23.53 kcal
Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal
Total: -76.86 1.14 -75.72 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000424178567.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 107.297 kcal
(2) G-P(sol) polarization free energy of solvation -76.860 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.437 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.136 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.724 kcal
(6) G-S(sol) free energy of system = (1) + (5) 31.573 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds