Wall clock time and date at job start Sat Apr 11 2020 06:39:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31616 * 1
3 3 Si 1.86802 * 120.00045 * 2 1
4 4 H 1.48501 * 109.46748 * 269.99544 * 3 2 1
5 5 H 1.48495 * 109.47433 * 29.99024 * 3 2 1
6 6 H 1.48496 * 109.47243 * 149.99864 * 3 2 1
7 7 C 1.38812 * 120.00142 * 179.97438 * 2 1 3
8 8 H 1.08003 * 119.99624 * 0.02562 * 7 2 1
9 9 N 1.36933 * 120.00269 * 180.02562 * 7 2 1
10 10 C 1.46495 * 120.00261 * 180.02562 * 9 7 2
11 11 H 1.08997 * 109.52574 * 325.08046 * 10 9 7
12 12 C 1.53039 * 109.50019 * 204.99517 * 10 9 7
13 13 C 1.53046 * 109.52798 * 178.68853 * 12 10 9
14 14 C 1.53159 * 109.32667 * 61.37318 * 13 12 10
15 15 N 1.46928 * 108.76987 * 305.35456 * 14 13 12
16 16 C 1.34771 * 120.63178 * 233.63011 * 15 14 13
17 17 O 1.21284 * 119.99847 * 179.97438 * 16 15 14
18 18 C 1.50699 * 120.00350 * 359.97438 * 16 15 14
19 19 C 1.52994 * 109.47537 * 179.97438 * 18 16 15
20 20 N 1.46505 * 109.47097 * 179.97438 * 19 18 16
21 21 C 1.36035 * 126.34767 * 265.02475 * 20 19 18
22 22 N 1.30113 * 110.09847 * 180.02562 * 21 20 19
23 23 C 1.35781 * 109.64137 * 359.97438 * 22 21 20
24 24 C 1.39742 * 133.59388 * 180.02562 * 23 22 21
25 25 C 1.36609 * 119.88428 * 179.97438 * 24 23 22
26 26 C 1.38783 * 120.66587 * 359.97438 * 25 24 23
27 27 C 1.37855 * 120.45125 * 0.02562 * 26 25 24
28 28 C 1.38055 * 126.34799 * 84.71419 * 20 19 18
29 29 C 1.46931 * 118.73792 * 53.61250 * 15 14 13
30 30 H 0.97008 * 119.99867 * 0.02562 * 1 2 3
31 31 H 0.97001 * 119.99807 * 359.97438 * 9 7 2
32 32 H 1.09002 * 109.46050 * 298.70439 * 12 10 9
33 33 H 1.09004 * 109.46034 * 58.67655 * 12 10 9
34 34 H 1.08996 * 109.49379 * 181.30938 * 13 12 10
35 35 H 1.08994 * 109.49581 * 301.40708 * 13 12 10
36 36 H 1.08999 * 109.58991 * 185.56748 * 14 13 12
37 37 H 1.09002 * 109.70860 * 65.20753 * 14 13 12
38 38 H 1.09005 * 109.47033 * 300.00164 * 18 16 15
39 39 H 1.09001 * 109.47321 * 59.99201 * 18 16 15
40 40 H 1.09000 * 109.47197 * 299.99714 * 19 18 16
41 41 H 1.08995 * 109.47365 * 59.99829 * 19 18 16
42 42 H 1.07999 * 124.95006 * 0.02562 * 21 20 19
43 43 H 1.07999 * 120.06140 * 359.92730 * 24 23 22
44 44 H 1.07994 * 119.66582 * 179.97438 * 25 24 23
45 45 H 1.08002 * 119.77210 * 180.02562 * 26 25 24
46 46 H 1.08003 * 120.15492 * 180.02562 * 27 26 25
47 47 H 1.08998 * 109.58425 * 186.61021 * 29 15 14
48 48 H 1.08995 * 109.70793 * 66.24640 * 29 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4977 2.0463 -1.4001
5 1 1.4476 2.6528 0.6998
6 1 3.5477 1.4402 0.7000
7 6 2.0103 -1.2021 0.0005
8 1 1.4702 -2.1374 0.0005
9 7 3.3796 -1.2022 0.0011
10 6 4.1121 -2.4708 0.0011
11 1 3.5646 -3.2076 0.5887
12 6 5.4996 -2.2596 0.6112
13 6 6.2533 -3.5913 0.6415
14 6 6.4283 -4.1073 -0.7899
15 7 5.1088 -4.1755 -1.4325
16 6 4.6825 -5.3183 -2.0058
17 8 3.5910 -5.3619 -2.5327
18 6 5.5620 -6.5420 -1.9922
19 6 4.8465 -7.6924 -2.7030
20 7 5.7018 -8.8817 -2.6903
21 6 6.5501 -9.2754 -3.6782
22 7 7.1535 -10.3765 -3.3369
23 6 6.7335 -10.7643 -2.1053
24 6 7.0459 -11.8454 -1.2769
25 6 6.4405 -11.9664 -0.0583
26 6 5.5154 -11.0243 0.3691
27 6 5.1919 -9.9496 -0.4314
28 6 5.8008 -9.8075 -1.6709
29 6 4.2627 -2.9743 -1.4380
30 1 -0.4850 0.8401 -0.0004
31 1 3.8646 -0.3621 0.0007
32 1 6.0557 -1.5412 0.0088
33 1 5.3954 -1.8782 1.6270
34 1 7.2324 -3.4448 1.0974
35 1 5.6856 -4.3174 1.2232
36 1 6.8760 -5.1009 -0.7680
37 1 7.0724 -3.4286 -1.3491
38 1 6.4978 -6.3226 -2.5064
39 1 5.7722 -6.8269 -0.9613
40 1 3.9110 -7.9117 -2.1884
41 1 4.6360 -7.4077 -3.7339
42 1 6.7007 -8.7506 -4.6100
43 1 7.7642 -12.5846 -1.5998
44 1 6.6843 -12.8035 0.5789
45 1 5.0458 -11.1338 1.3355
46 1 4.4716 -9.2190 -0.0939
47 1 3.2814 -3.2204 -1.8435
48 1 4.7271 -2.2004 -2.0491
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000999644009.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:39:43
Heat of formation + Delta-G solvation = 54.947784 kcal
Electronic energy + Delta-G solvation = -29174.842022 eV
Core-core repulsion = 25230.719575 eV
Total energy + Delta-G solvation = -3944.122446 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-42.41361 -40.20317 -37.78976 -37.48211 -35.11397 -34.73146 -32.49569 -31.73170
-31.34757 -30.06826 -29.57416 -28.75947 -25.91181 -24.38594 -23.66072 -23.50717
-22.29267 -21.85034 -20.83578 -20.35312 -18.96147 -17.83451 -17.62227 -17.51634
-16.53795 -16.17379 -16.07098 -15.87489 -15.33867 -14.81167 -14.56738 -14.39139
-14.33874 -14.11069 -13.87711 -13.66129 -13.61193 -13.25664 -12.93502 -12.71548
-12.68987 -12.49546 -12.28677 -11.94632 -11.77460 -11.69441 -11.66817 -11.31458
-11.00690 -10.83668 -10.76686 -10.67011 -10.35481 -10.20614 -9.99483 -9.83858
-9.64538 -9.19691 -8.63895 -8.53460 -8.37576 -7.37153 -5.83193 -3.21184
0.69926 1.25705 2.23288 2.52748 2.56465 3.05100 3.31462 3.33891
3.40270 3.63256 4.00469 4.19996 4.31471 4.33642 4.47047 4.52081
4.67321 4.75122 4.79202 4.88123 4.94592 5.01285 5.05180 5.15557
5.17749 5.26571 5.34668 5.35440 5.39740 5.41508 5.49796 5.61619
5.69417 5.78892 5.88585 5.91828 5.97600 6.12894 6.16582 6.25988
6.26931 6.27835 6.50506 6.59872 6.62350 6.78980 6.83296 7.43665
7.59604 7.91553 8.14257 8.35265 9.12012 9.83695 10.01770 11.34632
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.020024 B = 0.002148 C = 0.002143
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1397.963762 B =13030.271095 C =13063.409381
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.929 5.929
2 C 0.008 3.992
3 Si 0.885 3.115
4 H -0.284 1.284
5 H -0.290 1.290
6 H -0.277 1.277
7 C -0.250 4.250
8 H 0.091 0.909
9 N -0.742 5.742
10 C 0.173 3.827
11 H 0.059 0.941
12 C -0.130 4.130
13 C -0.130 4.130
14 C 0.105 3.895
15 N -0.604 5.604
16 C 0.515 3.485
17 O -0.538 6.538
18 C -0.157 4.157
19 C 0.126 3.874
20 N -0.490 5.490
21 C 0.262 3.738
22 N -0.499 5.499
23 C 0.043 3.957
24 C -0.066 4.066
25 C -0.129 4.129
26 C -0.103 4.103
27 C -0.108 4.108
28 C 0.048 3.952
29 C 0.092 3.908
30 H 0.260 0.740
31 H 0.363 0.637
32 H 0.060 0.940
33 H 0.069 0.931
34 H 0.073 0.927
35 H 0.068 0.932
36 H 0.079 0.921
37 H 0.069 0.931
38 H 0.099 0.901
39 H 0.099 0.901
40 H 0.100 0.900
41 H 0.107 0.893
42 H 0.213 0.787
43 H 0.127 0.873
44 H 0.128 0.872
45 H 0.130 0.870
46 H 0.123 0.877
47 H 0.096 0.904
48 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.575 -19.521 -1.721 27.001
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.576 5.576
2 C -0.189 4.189
3 Si 0.715 3.285
4 H -0.210 1.210
5 H -0.216 1.216
6 H -0.203 1.203
7 C -0.380 4.380
8 H 0.109 0.891
9 N -0.384 5.384
10 C 0.063 3.937
11 H 0.077 0.923
12 C -0.169 4.169
13 C -0.169 4.169
14 C -0.018 4.018
15 N -0.337 5.337
16 C 0.301 3.699
17 O -0.416 6.416
18 C -0.198 4.198
19 C 0.004 3.996
20 N -0.180 5.180
21 C -0.024 4.024
22 N -0.218 5.218
23 C -0.075 4.075
24 C -0.086 4.086
25 C -0.150 4.150
26 C -0.123 4.123
27 C -0.129 4.129
28 C -0.061 4.061
29 C -0.033 4.033
30 H 0.071 0.929
31 H 0.196 0.804
32 H 0.079 0.921
33 H 0.088 0.912
34 H 0.092 0.908
35 H 0.086 0.914
36 H 0.097 0.903
37 H 0.088 0.912
38 H 0.117 0.883
39 H 0.117 0.883
40 H 0.118 0.882
41 H 0.125 0.875
42 H 0.230 0.770
43 H 0.145 0.855
44 H 0.146 0.854
45 H 0.147 0.853
46 H 0.141 0.859
47 H 0.114 0.886
48 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges 18.216 -19.908 -2.476 27.098
hybrid contribution 0.032 1.940 0.401 1.982
sum 18.248 -17.968 -2.074 25.693
Atomic orbital electron populations
1.69706 1.05126 1.25926 1.56879 1.24692 0.95237 0.97241 1.01688
0.86557 0.79187 0.84988 0.77806 1.21014 1.21647 1.20319 1.19080
0.80340 0.94851 1.43715 0.89082 1.42721 1.04159 1.01695 1.89844
1.20450 0.90950 0.89565 0.92767 0.92290 1.21874 0.96700 0.96380
1.01901 1.21864 1.00912 0.98242 0.95832 1.21765 0.84330 1.01731
0.93952 1.48246 1.18130 1.11851 1.55522 1.20202 0.86989 0.84001
0.78685 1.90759 1.21736 1.83966 1.45122 1.22041 1.00228 0.93776
1.03753 1.21580 0.92582 0.81271 1.04170 1.45558 1.36211 1.21387
1.14821 1.25394 0.89064 0.93304 0.94630 1.70474 1.26469 1.12189
1.12683 1.19089 0.98420 0.97031 0.93007 1.20017 0.99829 0.95836
0.92909 1.20657 0.98124 0.99964 0.96229 1.20919 0.98050 0.93818
0.99484 1.20047 1.01284 0.99943 0.91638 1.18934 1.01973 0.92850
0.92366 1.22737 0.95642 0.84182 1.00698 0.92942 0.80433 0.92102
0.91240 0.90816 0.91360 0.90299 0.91236 0.88314 0.88316 0.88156
0.87521 0.77049 0.85531 0.85439 0.85251 0.85889 0.88569 0.92060
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -28.93 13.97 55.49 0.78 -28.16 16
2 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16
3 Si 0.88 21.55 27.74 -169.99 -4.71 16.84 16
4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16
5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16
6 H -0.28 -6.27 6.52 56.52 0.37 -5.90 16
7 C -0.25 -6.91 10.41 -15.06 -0.16 -7.07 16
8 H 0.09 2.75 8.06 -52.48 -0.42 2.32 16
9 N -0.74 -16.77 4.93 -53.31 -0.26 -17.03 16
10 C 0.17 3.13 2.92 -67.81 -0.20 2.93 16
11 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16
12 C -0.13 -1.78 5.36 -26.69 -0.14 -1.92 16
13 C -0.13 -1.31 6.08 -26.63 -0.16 -1.47 16
14 C 0.11 0.99 6.34 -3.73 -0.02 0.97 16
15 N -0.60 -7.92 2.97 -172.78 -0.51 -8.43 16
16 C 0.51 6.73 7.70 -10.99 -0.08 6.65 16
17 O -0.54 -9.32 15.40 5.55 0.09 -9.24 16
18 C -0.16 -1.34 4.37 -27.89 -0.12 -1.46 16
19 C 0.13 1.09 5.45 -4.04 -0.02 1.07 16
20 N -0.49 -4.55 2.81 -115.80 -0.32 -4.87 16
21 C 0.26 2.34 12.49 -89.78 -1.12 1.22 16
22 N -0.50 -5.85 11.27 -12.05 -0.14 -5.99 16
23 C 0.04 0.49 7.23 -84.70 -0.61 -0.12 16
24 C -0.07 -0.64 10.05 -39.61 -0.40 -1.04 16
25 C -0.13 -1.03 9.96 -39.97 -0.40 -1.43 16
26 C -0.10 -0.83 10.03 -39.52 -0.40 -1.23 16
27 C -0.11 -1.02 10.05 -39.50 -0.40 -1.41 16
28 C 0.05 0.51 6.87 -83.99 -0.58 -0.07 16
29 C 0.09 1.56 6.02 -3.70 -0.02 1.54 16
30 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16
31 H 0.36 7.98 5.66 -40.82 -0.23 7.75 16
32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16
34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16
35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16
36 H 0.08 0.55 5.93 -51.93 -0.31 0.24 16
37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16
38 H 0.10 0.67 7.94 -51.93 -0.41 0.26 16
39 H 0.10 0.78 7.69 -51.93 -0.40 0.38 16
40 H 0.10 0.97 8.10 -51.93 -0.42 0.55 16
41 H 0.11 0.85 8.09 -51.93 -0.42 0.43 16
42 H 0.21 1.02 8.06 -52.49 -0.42 0.60 16
43 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16
44 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16
45 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16
46 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16
47 H 0.10 1.99 7.00 -51.93 -0.36 1.63 16
48 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16
LS Contribution 390.66 15.07 5.89 5.89
Total: -1.00 -35.29 390.66 -11.35 -46.64
By element:
Atomic # 1 Polarization: 14.28 SS G_CDS: -7.22 Total: 7.06 kcal
Atomic # 6 Polarization: 2.22 SS G_CDS: -4.93 Total: -2.72 kcal
Atomic # 7 Polarization: -64.02 SS G_CDS: -0.46 Total: -64.48 kcal
Atomic # 8 Polarization: -9.32 SS G_CDS: 0.09 Total: -9.24 kcal
Atomic # 14 Polarization: 21.55 SS G_CDS: -4.71 Total: 16.84 kcal
Total LS contribution 5.89 Total: 5.89 kcal
Total: -35.29 -11.35 -46.64 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000999644009.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 101.592 kcal
(2) G-P(sol) polarization free energy of solvation -35.292 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.300 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.352 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.644 kcal
(6) G-S(sol) free energy of system = (1) + (5) 54.948 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds