Wall clock time and date at job start Sat Apr 11 2020 06:39:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31616 * 1
3 3 Si 1.86802 * 120.00045 * 2 1
4 4 H 1.48501 * 109.46748 * 269.99544 * 3 2 1
5 5 H 1.48495 * 109.47433 * 29.99024 * 3 2 1
6 6 H 1.48496 * 109.47243 * 149.99864 * 3 2 1
7 7 C 1.38812 * 120.00142 * 179.97438 * 2 1 3
8 8 H 1.08003 * 119.99624 * 0.02562 * 7 2 1
9 9 N 1.36933 * 120.00269 * 180.02562 * 7 2 1
10 10 C 1.46495 * 120.00261 * 180.02562 * 9 7 2
11 11 H 1.08997 * 109.52574 * 325.08046 * 10 9 7
12 12 C 1.53039 * 109.50019 * 204.99517 * 10 9 7
13 13 C 1.53046 * 109.52798 * 178.68853 * 12 10 9
14 14 C 1.53159 * 109.32667 * 61.37318 * 13 12 10
15 15 N 1.46928 * 108.76987 * 305.35456 * 14 13 12
16 16 C 1.34771 * 120.63178 * 233.63011 * 15 14 13
17 17 O 1.21284 * 119.99847 * 179.97438 * 16 15 14
18 18 C 1.50699 * 120.00350 * 359.97438 * 16 15 14
19 19 C 1.52994 * 109.47537 * 179.97438 * 18 16 15
20 20 N 1.46505 * 109.47097 * 179.97438 * 19 18 16
21 21 C 1.36035 * 126.34767 * 265.02475 * 20 19 18
22 22 N 1.30113 * 110.09847 * 180.02562 * 21 20 19
23 23 C 1.35781 * 109.64137 * 359.97438 * 22 21 20
24 24 C 1.39742 * 133.59388 * 180.02562 * 23 22 21
25 25 C 1.36609 * 119.88428 * 179.97438 * 24 23 22
26 26 C 1.38783 * 120.66587 * 359.97438 * 25 24 23
27 27 C 1.37855 * 120.45125 * 0.02562 * 26 25 24
28 28 C 1.38055 * 126.34799 * 84.71419 * 20 19 18
29 29 C 1.46931 * 118.73792 * 53.61250 * 15 14 13
30 30 H 0.97008 * 119.99867 * 0.02562 * 1 2 3
31 31 H 0.97001 * 119.99807 * 359.97438 * 9 7 2
32 32 H 1.09002 * 109.46050 * 298.70439 * 12 10 9
33 33 H 1.09004 * 109.46034 * 58.67655 * 12 10 9
34 34 H 1.08996 * 109.49379 * 181.30938 * 13 12 10
35 35 H 1.08994 * 109.49581 * 301.40708 * 13 12 10
36 36 H 1.08999 * 109.58991 * 185.56748 * 14 13 12
37 37 H 1.09002 * 109.70860 * 65.20753 * 14 13 12
38 38 H 1.09005 * 109.47033 * 300.00164 * 18 16 15
39 39 H 1.09001 * 109.47321 * 59.99201 * 18 16 15
40 40 H 1.09000 * 109.47197 * 299.99714 * 19 18 16
41 41 H 1.08995 * 109.47365 * 59.99829 * 19 18 16
42 42 H 1.07999 * 124.95006 * 0.02562 * 21 20 19
43 43 H 1.07999 * 120.06140 * 359.92730 * 24 23 22
44 44 H 1.07994 * 119.66582 * 179.97438 * 25 24 23
45 45 H 1.08002 * 119.77210 * 180.02562 * 26 25 24
46 46 H 1.08003 * 120.15492 * 180.02562 * 27 26 25
47 47 H 1.08998 * 109.58425 * 186.61021 * 29 15 14
48 48 H 1.08995 * 109.70793 * 66.24640 * 29 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4977 2.0463 -1.4001
5 1 1.4476 2.6528 0.6998
6 1 3.5477 1.4402 0.7000
7 6 2.0103 -1.2021 0.0005
8 1 1.4702 -2.1374 0.0005
9 7 3.3796 -1.2022 0.0011
10 6 4.1121 -2.4708 0.0011
11 1 3.5646 -3.2076 0.5887
12 6 5.4996 -2.2596 0.6112
13 6 6.2533 -3.5913 0.6415
14 6 6.4283 -4.1073 -0.7899
15 7 5.1088 -4.1755 -1.4325
16 6 4.6825 -5.3183 -2.0058
17 8 3.5910 -5.3619 -2.5327
18 6 5.5620 -6.5420 -1.9922
19 6 4.8465 -7.6924 -2.7030
20 7 5.7018 -8.8817 -2.6903
21 6 6.5501 -9.2754 -3.6782
22 7 7.1535 -10.3765 -3.3369
23 6 6.7335 -10.7643 -2.1053
24 6 7.0459 -11.8454 -1.2769
25 6 6.4405 -11.9664 -0.0583
26 6 5.5154 -11.0243 0.3691
27 6 5.1919 -9.9496 -0.4314
28 6 5.8008 -9.8075 -1.6709
29 6 4.2627 -2.9743 -1.4380
30 1 -0.4850 0.8401 -0.0004
31 1 3.8646 -0.3621 0.0007
32 1 6.0557 -1.5412 0.0088
33 1 5.3954 -1.8782 1.6270
34 1 7.2324 -3.4448 1.0974
35 1 5.6856 -4.3174 1.2232
36 1 6.8760 -5.1009 -0.7680
37 1 7.0724 -3.4286 -1.3491
38 1 6.4978 -6.3226 -2.5064
39 1 5.7722 -6.8269 -0.9613
40 1 3.9110 -7.9117 -2.1884
41 1 4.6360 -7.4077 -3.7339
42 1 6.7007 -8.7506 -4.6100
43 1 7.7642 -12.5846 -1.5998
44 1 6.6843 -12.8035 0.5789
45 1 5.0458 -11.1338 1.3355
46 1 4.4716 -9.2190 -0.0939
47 1 3.2814 -3.2204 -1.8435
48 1 4.7271 -2.2004 -2.0491
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000999644009.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:39:42
Heat of formation + Delta-G solvation = 33.249953 kcal
Electronic energy + Delta-G solvation = -29175.782910 eV
Core-core repulsion = 25230.719575 eV
Total energy + Delta-G solvation = -3945.063335 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-43.10422 -41.29133 -38.91958 -38.23191 -36.35159 -35.87073 -34.05301 -32.93619
-32.44756 -30.98624 -30.24570 -30.09179 -26.92147 -25.73722 -24.94115 -24.16296
-23.14983 -22.98296 -21.91472 -21.35838 -20.08349 -19.53181 -18.68148 -18.17372
-17.46106 -17.11335 -16.91795 -16.66668 -16.59830 -16.17342 -15.90101 -15.53287
-15.14493 -15.05883 -14.94377 -14.63229 -14.56873 -14.41770 -14.22373 -13.96006
-13.77661 -13.65726 -13.26139 -12.98668 -12.89311 -12.60871 -12.58545 -12.43927
-12.33061 -12.10631 -11.95903 -11.88131 -11.81022 -11.41969 -11.37573 -11.16822
-10.94401 -10.88490 -9.85752 -9.32298 -9.27825 -9.07046 -8.06129 -5.42324
0.03460 0.57672 1.35325 1.40348 1.47187 1.49221 1.54455 1.83932
2.07668 2.45578 2.94076 3.24603 3.34062 3.45762 3.50163 3.62016
3.65386 3.75747 3.96070 4.02952 4.07788 4.12572 4.23070 4.26143
4.31088 4.33215 4.35178 4.52117 4.53376 4.59572 4.69230 4.71503
4.75631 4.84435 4.88018 4.90072 5.00057 5.12084 5.24994 5.34816
5.42152 5.46056 5.48581 5.60116 5.61400 5.72605 5.97424 6.17478
6.17998 6.40498 6.89749 7.02695 7.10400 7.76140 7.97326 9.15486
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.020024 B = 0.002148 C = 0.002143
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1397.963762 B =13030.271095 C =13063.409381
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.985 5.985
2 C -0.066 4.066
3 Si 0.962 3.038
4 H -0.278 1.278
5 H -0.296 1.296
6 H -0.244 1.244
7 C -0.237 4.237
8 H 0.045 0.955
9 N -0.745 5.745
10 C 0.169 3.831
11 H 0.030 0.970
12 C -0.122 4.122
13 C -0.123 4.123
14 C 0.101 3.899
15 N -0.604 5.604
16 C 0.510 3.490
17 O -0.591 6.591
18 C -0.138 4.138
19 C 0.132 3.868
20 N -0.488 5.488
21 C 0.267 3.733
22 N -0.534 5.534
23 C 0.015 3.985
24 C -0.084 4.084
25 C -0.124 4.124
26 C -0.103 4.103
27 C -0.122 4.122
28 C 0.030 3.970
29 C 0.105 3.895
30 H 0.259 0.741
31 H 0.370 0.630
32 H 0.076 0.924
33 H 0.065 0.935
34 H 0.111 0.889
35 H 0.061 0.939
36 H 0.113 0.887
37 H 0.090 0.910
38 H 0.130 0.870
39 H 0.112 0.888
40 H 0.084 0.916
41 H 0.114 0.886
42 H 0.249 0.751
43 H 0.134 0.866
44 H 0.155 0.845
45 H 0.153 0.847
46 H 0.128 0.872
47 H 0.045 0.955
48 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 22.763 -19.573 -1.108 30.042
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.634 5.634
2 C -0.257 4.257
3 Si 0.788 3.212
4 H -0.204 1.204
5 H -0.223 1.223
6 H -0.168 1.168
7 C -0.368 4.368
8 H 0.063 0.937
9 N -0.388 5.388
10 C 0.060 3.940
11 H 0.048 0.952
12 C -0.161 4.161
13 C -0.162 4.162
14 C -0.020 4.020
15 N -0.337 5.337
16 C 0.299 3.701
17 O -0.472 6.472
18 C -0.178 4.178
19 C 0.009 3.991
20 N -0.178 5.178
21 C -0.018 4.018
22 N -0.253 5.253
23 C -0.103 4.103
24 C -0.104 4.104
25 C -0.144 4.144
26 C -0.122 4.122
27 C -0.143 4.143
28 C -0.079 4.079
29 C -0.021 4.021
30 H 0.067 0.933
31 H 0.204 0.796
32 H 0.095 0.905
33 H 0.084 0.916
34 H 0.130 0.870
35 H 0.080 0.920
36 H 0.131 0.869
37 H 0.108 0.892
38 H 0.148 0.852
39 H 0.131 0.869
40 H 0.102 0.898
41 H 0.132 0.868
42 H 0.265 0.735
43 H 0.152 0.848
44 H 0.173 0.827
45 H 0.171 0.829
46 H 0.146 0.854
47 H 0.064 0.936
48 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges 22.500 -20.009 -1.842 30.166
hybrid contribution -1.318 1.793 0.226 2.236
sum 21.182 -18.216 -1.616 27.984
Atomic orbital electron populations
1.69914 1.07424 1.26868 1.59228 1.25622 0.96194 1.01687 1.02196
0.85315 0.78805 0.78868 0.78179 1.20379 1.22285 1.16796 1.18944
0.82728 0.93111 1.41975 0.93662 1.42663 1.02335 1.03807 1.89988
1.20644 0.93043 0.86998 0.93321 0.95203 1.21807 0.93773 0.99180
1.01311 1.21872 1.02059 0.95697 0.96564 1.22131 0.82254 1.04395
0.93247 1.48295 1.19103 1.10513 1.55769 1.21007 0.86741 0.84959
0.77395 1.90745 1.24277 1.84816 1.47326 1.21944 0.99978 0.90933
1.04985 1.21487 0.91934 0.81202 1.04460 1.45555 1.36284 1.21226
1.14721 1.26114 0.87829 0.92621 0.95280 1.70452 1.28003 1.13643
1.13236 1.19472 0.99276 0.98041 0.93504 1.20292 1.00596 0.95894
0.93569 1.20997 0.97161 1.00451 0.95810 1.21280 0.97641 0.93115
1.00179 1.20269 1.01602 1.00764 0.91652 1.19170 1.02341 0.93274
0.93087 1.22157 0.94325 0.86149 0.99425 0.93255 0.79594 0.90519
0.91594 0.87024 0.92035 0.86861 0.89159 0.85247 0.86942 0.89778
0.86830 0.73529 0.84832 0.82715 0.82890 0.85429 0.93606 0.91367
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.98 -64.06 13.97 21.65 0.30 -63.75 16
2 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16
3 Si 0.96 44.78 27.74 68.60 1.90 46.69 16
4 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16
5 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16
6 H -0.24 -9.90 6.52 99.48 0.65 -9.26 16
7 C -0.24 -13.66 10.41 84.03 0.88 -12.79 16
8 H 0.05 2.96 8.06 -2.91 -0.02 2.94 16
9 N -0.74 -33.89 4.93 -322.57 -1.59 -35.48 16
10 C 0.17 6.13 2.92 45.07 0.13 6.26 16
11 H 0.03 1.24 8.08 -2.39 -0.02 1.22 16
12 C -0.12 -3.01 5.36 30.62 0.16 -2.84 16
13 C -0.12 -1.98 6.08 30.66 0.19 -1.79 16
14 C 0.10 1.45 6.34 86.35 0.55 2.00 16
15 N -0.60 -14.96 2.97 -818.95 -2.43 -17.40 16
16 C 0.51 12.97 7.70 87.66 0.67 13.64 16
17 O -0.59 -21.32 15.40 -3.04 -0.05 -21.36 16
18 C -0.14 -2.00 4.37 29.85 0.13 -1.87 16
19 C 0.13 2.12 5.45 86.38 0.47 2.59 16
20 N -0.49 -8.36 2.81 -520.27 -1.46 -9.82 16
21 C 0.27 4.32 12.49 180.06 2.25 6.56 16
22 N -0.53 -12.07 11.27 -192.04 -2.17 -14.23 16
23 C 0.01 0.33 7.23 39.45 0.29 0.61 16
24 C -0.08 -1.55 10.05 22.25 0.22 -1.33 16
25 C -0.12 -1.74 9.96 22.02 0.22 -1.52 16
26 C -0.10 -1.47 10.03 22.31 0.22 -1.25 16
27 C -0.12 -2.16 10.05 22.32 0.22 -1.94 16
28 C 0.03 0.61 6.87 38.86 0.27 0.88 16
29 C 0.11 3.64 6.02 86.36 0.52 4.16 16
30 H 0.26 15.95 8.31 -92.70 -0.77 15.18 16
31 H 0.37 15.67 5.66 -92.71 -0.52 15.15 16
32 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16
33 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16
34 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16
35 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16
36 H 0.11 0.94 5.93 -2.39 -0.01 0.92 16
37 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16
38 H 0.13 1.17 7.94 -2.38 -0.02 1.15 16
39 H 0.11 1.41 7.69 -2.39 -0.02 1.39 16
40 H 0.08 1.65 8.10 -2.39 -0.02 1.63 16
41 H 0.11 1.68 8.09 -2.39 -0.02 1.66 16
42 H 0.25 1.71 8.06 -2.91 -0.02 1.69 16
43 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16
44 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16
45 H 0.15 1.38 8.06 -2.91 -0.02 1.35 16
46 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16
47 H 0.05 2.04 7.00 -2.39 -0.02 2.02 16
48 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16
Total: -1.00 -84.30 390.66 2.75 -81.54
By element:
Atomic # 1 Polarization: 25.47 SS G_CDS: 0.38 Total: 25.85 kcal
Atomic # 6 Polarization: 0.10 SS G_CDS: 7.86 Total: 7.96 kcal
Atomic # 7 Polarization: -133.34 SS G_CDS: -7.35 Total: -140.68 kcal
Atomic # 8 Polarization: -21.32 SS G_CDS: -0.05 Total: -21.36 kcal
Atomic # 14 Polarization: 44.78 SS G_CDS: 1.90 Total: 46.69 kcal
Total: -84.30 2.75 -81.54 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000999644009.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 114.793 kcal
(2) G-P(sol) polarization free energy of solvation -84.297 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.496 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.754 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.543 kcal
(6) G-S(sol) free energy of system = (1) + (5) 33.250 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds