Wall clock time and date at job start Sat Apr 11 2020 06:41:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31620 * 1
3 3 Si 1.86801 * 119.99818 * 2 1
4 4 H 1.48498 * 109.46655 * 269.99401 * 3 2 1
5 5 H 1.48493 * 109.47402 * 29.99524 * 3 2 1
6 6 H 1.48497 * 109.46980 * 149.99836 * 3 2 1
7 7 C 1.38816 * 120.00010 * 179.97438 * 2 1 3
8 8 H 1.07998 * 120.00027 * 195.71420 * 7 2 1
9 9 N 1.36936 * 120.00147 * 15.71271 * 7 2 1
10 10 C 1.47583 * 118.62322 * 26.50043 * 9 7 2
11 11 C 1.53947 * 112.12229 * 137.87312 * 10 9 7
12 12 C 1.50887 * 110.09355 * 319.45195 * 11 10 9
13 13 C 1.52565 * 109.36473 * 91.88556 * 12 11 10
14 14 C 1.47089 * 114.32525 * 274.98993 * 13 12 11
15 15 H 1.09003 * 109.33020 * 302.54013 * 14 13 12
16 16 N 1.46493 * 109.33307 * 183.06026 * 14 13 12
17 17 C 1.34780 * 120.00441 * 154.12845 * 16 14 13
18 18 O 1.21277 * 119.99643 * 359.97438 * 17 16 14
19 19 C 1.50701 * 119.99992 * 180.02562 * 17 16 14
20 20 N 1.46502 * 109.47095 * 179.97438 * 19 17 16
21 21 C 1.33982 * 125.02052 * 124.99938 * 20 19 17
22 22 C 1.38256 * 107.90668 * 179.97438 * 21 20 19
23 23 C 1.41118 * 134.81599 * 180.02562 * 22 21 20
24 24 C 1.35661 * 119.53548 * 179.97438 * 23 22 21
25 25 C 1.39679 * 121.72287 * 0.02562 * 24 23 22
26 26 C 1.35641 * 121.81952 * 359.97438 * 25 24 23
27 27 C 1.41150 * 119.59252 * 0.02562 * 26 25 24
28 28 N 1.32069 * 134.67686 * 180.36069 * 27 26 25
29 29 C 1.44576 * 118.64501 * 206.54702 * 9 7 2
30 30 H 0.97000 * 120.00099 * 0.02562 * 1 2 3
31 31 H 1.09004 * 108.94507 * 17.20076 * 10 9 7
32 32 H 1.08993 * 108.96478 * 258.56047 * 10 9 7
33 33 H 1.08996 * 109.36790 * 199.25789 * 11 10 9
34 34 H 1.08996 * 109.26467 * 79.57356 * 11 10 9
35 35 H 1.09002 * 109.48795 * 331.91435 * 12 11 10
36 36 H 1.09004 * 109.50475 * 211.86626 * 12 11 10
37 37 H 1.08996 * 108.51511 * 153.73249 * 13 12 11
38 38 H 1.08999 * 108.51181 * 36.23621 * 13 12 11
39 39 H 0.97006 * 120.00117 * 334.13153 * 16 14 13
40 40 H 1.08994 * 109.47130 * 299.99702 * 19 17 16
41 41 H 1.09000 * 109.47126 * 60.00180 * 19 17 16
42 42 H 1.07998 * 126.05228 * 0.02562 * 21 20 19
43 43 H 1.08001 * 120.23909 * 359.95579 * 23 22 21
44 44 H 1.07991 * 119.13601 * 179.97438 * 24 23 22
45 45 H 1.08000 * 119.09149 * 179.97438 * 25 24 23
46 46 H 1.08003 * 120.20366 * 180.02562 * 26 25 24
47 47 H 1.08998 * 109.44873 * 150.68597 * 29 9 7
48 48 H 1.09000 * 109.44670 * 30.74451 * 29 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 2.4977 2.0463 -1.4001
5 1 1.4476 2.6527 0.6999
6 1 3.5477 1.4402 0.7001
7 6 2.0103 -1.2022 0.0005
8 1 3.0600 -1.2195 0.2539
9 7 1.3640 -2.3661 -0.3201
10 6 0.1806 -2.2986 -1.1994
11 6 0.1735 -3.4245 -2.2493
12 6 1.5653 -3.6358 -2.7922
13 6 2.2725 -4.7074 -1.9680
14 6 2.9231 -4.2030 -0.7490
15 1 3.6421 -3.4290 -1.0176
16 7 3.6259 -5.3029 -0.0839
17 6 4.6847 -5.0445 0.7092
18 8 5.0558 -3.9014 0.8717
19 6 5.4079 -6.1760 1.3929
20 7 6.5128 -5.6382 2.1906
21 6 6.6967 -5.8617 3.4988
22 6 7.8403 -5.1895 3.8883
23 6 8.5401 -5.0391 5.1045
24 6 9.6668 -4.2843 5.1388
25 6 10.1584 -3.6462 3.9976
26 6 9.5358 -3.7484 2.7969
27 6 8.3575 -4.5177 2.6859
28 7 7.5351 -4.8193 1.6975
29 6 1.8685 -3.6097 0.2175
30 1 -0.4850 0.8400 -0.0004
31 1 0.1750 -1.3366 -1.7119
32 1 -0.7190 -2.3779 -0.5892
33 1 -0.4957 -3.1531 -3.0657
34 1 -0.1774 -4.3463 -1.7856
35 1 2.1248 -2.7023 -2.7319
36 1 1.5055 -3.9573 -3.8320
37 1 3.0289 -5.1818 -2.5931
38 1 1.5409 -5.4632 -1.6823
39 1 3.3294 -6.2172 -0.2142
40 1 4.7153 -6.7092 2.0440
41 1 5.8021 -6.8614 0.6426
42 1 6.0640 -6.4616 4.1362
43 1 8.1812 -5.5212 6.0018
44 1 10.1971 -4.1732 6.0730
45 1 11.0592 -3.0552 4.0734
46 1 9.9391 -3.2443 1.9311
47 1 1.0457 -4.3150 0.3342
48 1 2.3288 -3.4253 1.1882
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001034490894.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:41:03
Heat of formation + Delta-G solvation = 93.650820 kcal
Electronic energy + Delta-G solvation = -29721.519536 eV
Core-core repulsion = 25779.075380 eV
Total energy + Delta-G solvation = -3942.444157 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-41.36124 -39.70294 -37.85193 -37.10211 -34.62414 -33.29704 -32.92423 -31.83054
-30.94148 -30.22044 -28.81260 -27.80222 -25.96239 -24.37144 -23.51641 -22.74606
-21.99353 -20.68553 -20.39120 -20.12436 -19.19287 -17.54123 -17.15095 -16.96200
-16.60758 -16.09209 -15.69316 -15.35296 -15.02309 -14.58213 -14.37676 -14.07310
-14.00993 -13.65541 -13.58156 -13.20532 -13.13832 -12.76637 -12.67430 -12.51730
-12.14049 -11.93959 -11.67340 -11.55198 -11.49564 -11.05259 -10.94152 -10.77239
-10.57619 -10.31711 -10.23205 -10.16359 -10.11265 -9.75736 -9.70420 -9.64069
-9.59696 -8.89861 -8.62672 -8.32044 -7.62655 -6.64296 -5.74067 -3.17855
0.59270 1.82979 2.08514 2.44395 2.70073 3.22036 3.43834 3.50133
3.55623 3.87079 4.10823 4.41792 4.55378 4.65989 4.68574 4.75468
4.93732 5.05913 5.20739 5.28638 5.33106 5.38932 5.42791 5.52003
5.52449 5.66201 5.70584 5.95163 6.00035 6.07657 6.10079 6.25895
6.35420 6.44296 6.50000 6.56654 6.57321 6.58379 6.63064 6.66805
6.72914 6.79953 6.89647 6.90178 7.06574 7.44203 7.64208 7.65168
7.72204 7.93563 8.37862 8.52498 9.29163 9.93748 10.36834 11.33505
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.011699 B = 0.002973 C = 0.002524
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2392.740995 B = 9414.797400 C =11088.933456
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.906 5.906
2 C 0.006 3.994
3 Si 0.899 3.101
4 H -0.287 1.287
5 H -0.291 1.291
6 H -0.278 1.278
7 C -0.257 4.257
8 H 0.069 0.931
9 N -0.583 5.583
10 C 0.176 3.824
11 C -0.143 4.143
12 C -0.101 4.101
13 C -0.111 4.111
14 C 0.115 3.885
15 H 0.088 0.912
16 N -0.721 5.721
17 C 0.493 3.507
18 O -0.494 6.494
19 C 0.103 3.897
20 N -0.306 5.306
21 C 0.073 3.927
22 C -0.206 4.206
23 C -0.043 4.043
24 C -0.159 4.159
25 C -0.086 4.086
26 C -0.096 4.096
27 C 0.094 3.906
28 N -0.270 5.270
29 C 0.160 3.840
30 H 0.252 0.748
31 H 0.076 0.924
32 H 0.025 0.975
33 H 0.053 0.947
34 H 0.044 0.956
35 H 0.077 0.923
36 H 0.048 0.952
37 H 0.047 0.953
38 H 0.053 0.947
39 H 0.392 0.608
40 H 0.128 0.872
41 H 0.119 0.881
42 H 0.184 0.816
43 H 0.121 0.879
44 H 0.119 0.881
45 H 0.123 0.877
46 H 0.126 0.874
47 H 0.031 0.969
48 H 0.046 0.954
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.421 -18.136 4.478 21.895
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.551 5.551
2 C -0.192 4.192
3 Si 0.729 3.271
4 H -0.214 1.214
5 H -0.218 1.218
6 H -0.203 1.203
7 C -0.386 4.386
8 H 0.087 0.913
9 N -0.304 5.304
10 C 0.051 3.949
11 C -0.182 4.182
12 C -0.139 4.139
13 C -0.149 4.149
14 C 0.009 3.991
15 H 0.106 0.894
16 N -0.373 5.373
17 C 0.275 3.725
18 O -0.366 6.366
19 C -0.022 4.022
20 N -0.080 5.080
21 C -0.082 4.082
22 C -0.216 4.216
23 C -0.064 4.064
24 C -0.179 4.179
25 C -0.108 4.108
26 C -0.117 4.117
27 C -0.061 4.061
28 N -0.096 5.096
29 C 0.030 3.970
30 H 0.062 0.938
31 H 0.094 0.906
32 H 0.043 0.957
33 H 0.071 0.929
34 H 0.063 0.937
35 H 0.095 0.905
36 H 0.067 0.933
37 H 0.066 0.934
38 H 0.072 0.928
39 H 0.225 0.775
40 H 0.146 0.854
41 H 0.137 0.863
42 H 0.201 0.799
43 H 0.139 0.861
44 H 0.137 0.863
45 H 0.141 0.859
46 H 0.144 0.856
47 H 0.049 0.951
48 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges 11.145 -17.021 3.208 20.597
hybrid contribution 0.231 0.226 0.733 0.801
sum 11.376 -16.795 3.942 20.664
Atomic orbital electron populations
1.70077 1.05174 1.25369 1.54468 1.25001 0.95247 0.98325 1.00661
0.86321 0.79374 0.83676 0.77733 1.21418 1.21787 1.20288 1.19323
0.92721 0.84769 1.41828 0.91328 1.43577 1.32177 1.01536 1.53112
1.21057 0.88397 0.95858 0.89577 1.22080 0.95863 1.00615 0.99661
1.20831 0.97084 0.99441 0.96569 1.20562 0.99208 0.98942 0.96173
1.21318 0.96031 0.87900 0.93827 0.89371 1.46085 1.31264 1.10796
1.49189 1.20201 0.81274 0.90222 0.80838 1.90890 1.64354 1.21385
1.59942 1.21759 0.87186 0.96010 0.97259 1.48018 1.18959 1.34500
1.06562 1.22582 0.98359 1.01491 0.85752 1.19545 0.99027 1.06954
0.96092 1.20187 0.94076 0.97298 0.94804 1.20474 0.97988 1.00975
0.98445 1.20601 0.99410 0.98644 0.92182 1.19904 0.93284 0.99978
0.98512 1.21007 0.95863 0.98087 0.91123 1.77896 0.99178 1.12657
1.19848 1.20886 0.93270 0.88543 0.94342 0.93765 0.90614 0.95723
0.92869 0.93711 0.90456 0.93344 0.93404 0.92818 0.77519 0.85392
0.86319 0.79866 0.86145 0.86314 0.85894 0.85615 0.95080 0.93541
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -26.56 11.01 55.49 0.61 -25.95 16
2 C 0.01 0.17 4.87 -17.43 -0.08 0.08 16
3 Si 0.90 22.84 29.58 -169.99 -5.03 17.82 16
4 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16
5 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16
6 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16
7 C -0.26 -7.27 9.44 -15.06 -0.14 -7.41 16
8 H 0.07 2.04 7.88 -52.49 -0.41 1.63 16
9 N -0.58 -14.47 2.27 -172.11 -0.39 -14.86 16
10 C 0.18 4.13 4.67 -2.96 -0.01 4.12 16
11 C -0.14 -2.58 5.71 -27.30 -0.16 -2.73 16
12 C -0.10 -1.70 5.51 -28.01 -0.15 -1.85 16
13 C -0.11 -1.64 4.55 -29.79 -0.14 -1.78 16
14 C 0.12 2.00 2.35 -69.79 -0.16 1.84 16
15 H 0.09 1.91 7.55 -51.93 -0.39 1.52 16
16 N -0.72 -9.41 5.05 -55.63 -0.28 -9.69 16
17 C 0.49 7.33 7.81 -10.98 -0.09 7.24 16
18 O -0.49 -10.54 15.32 5.56 0.09 -10.46 16
19 C 0.10 0.99 6.93 -5.19 -0.04 0.96 16
20 N -0.31 -4.07 3.35 -62.00 -0.21 -4.28 16
21 C 0.07 0.81 11.45 -16.61 -0.19 0.62 16
22 C -0.21 -2.72 6.33 -105.19 -0.67 -3.38 16
23 C -0.04 -0.47 10.09 -39.41 -0.40 -0.86 16
24 C -0.16 -1.63 9.90 -39.97 -0.40 -2.03 16
25 C -0.09 -0.94 9.89 -39.97 -0.40 -1.33 16
26 C -0.10 -1.29 10.08 -39.41 -0.40 -1.69 16
27 C 0.09 1.48 7.49 -83.05 -0.62 0.85 16
28 N -0.27 -4.62 11.56 33.25 0.38 -4.23 16
29 C 0.16 3.34 5.24 -4.09 -0.02 3.32 16
30 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16
31 H 0.08 2.00 6.33 -51.93 -0.33 1.67 16
32 H 0.02 0.63 8.03 -51.93 -0.42 0.21 16
33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16
34 H 0.04 0.74 7.32 -51.93 -0.38 0.36 16
35 H 0.08 1.55 7.48 -51.93 -0.39 1.16 16
36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16
37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16
38 H 0.05 0.71 7.36 -51.93 -0.38 0.33 16
39 H 0.39 3.37 8.58 -40.82 -0.35 3.02 16
40 H 0.13 0.65 8.04 -51.93 -0.42 0.24 16
41 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16
42 H 0.18 1.15 8.06 -52.49 -0.42 0.73 16
43 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16
44 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16
45 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16
46 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16
47 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16
48 H 0.05 1.09 7.98 -51.93 -0.41 0.67 16
LS Contribution 387.55 15.07 5.84 5.84
Total: -1.00 -37.54 387.55 -10.29 -47.83
By element:
Atomic # 1 Polarization: 9.27 SS G_CDS: -7.24 Total: 2.03 kcal
Atomic # 6 Polarization: 0.02 SS G_CDS: -4.06 Total: -4.04 kcal
Atomic # 7 Polarization: -59.14 SS G_CDS: 0.12 Total: -59.02 kcal
Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.46 kcal
Atomic # 14 Polarization: 22.84 SS G_CDS: -5.03 Total: 17.82 kcal
Total LS contribution 5.84 Total: 5.84 kcal
Total: -37.54 -10.29 -47.83 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001034490894.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 141.484 kcal
(2) G-P(sol) polarization free energy of solvation -37.545 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.939 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.288 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.833 kcal
(6) G-S(sol) free energy of system = (1) + (5) 93.651 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds