Wall clock time and date at job start Sat Apr 11 2020 06:41:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31620 * 1
3 3 Si 1.86801 * 119.99818 * 2 1
4 4 H 1.48498 * 109.46655 * 269.99401 * 3 2 1
5 5 H 1.48493 * 109.47402 * 29.99524 * 3 2 1
6 6 H 1.48497 * 109.46980 * 149.99836 * 3 2 1
7 7 C 1.38816 * 120.00010 * 179.97438 * 2 1 3
8 8 H 1.07998 * 120.00027 * 195.71420 * 7 2 1
9 9 N 1.36936 * 120.00147 * 15.71271 * 7 2 1
10 10 C 1.47583 * 118.62322 * 26.50043 * 9 7 2
11 11 C 1.53947 * 112.12229 * 137.87312 * 10 9 7
12 12 C 1.50887 * 110.09355 * 319.45195 * 11 10 9
13 13 C 1.52565 * 109.36473 * 91.88556 * 12 11 10
14 14 C 1.47089 * 114.32525 * 274.98993 * 13 12 11
15 15 H 1.09003 * 109.33020 * 302.54013 * 14 13 12
16 16 N 1.46493 * 109.33307 * 183.06026 * 14 13 12
17 17 C 1.34780 * 120.00441 * 154.12845 * 16 14 13
18 18 O 1.21277 * 119.99643 * 359.97438 * 17 16 14
19 19 C 1.50701 * 119.99992 * 180.02562 * 17 16 14
20 20 N 1.46502 * 109.47095 * 179.97438 * 19 17 16
21 21 C 1.33982 * 125.02052 * 124.99938 * 20 19 17
22 22 C 1.38256 * 107.90668 * 179.97438 * 21 20 19
23 23 C 1.41118 * 134.81599 * 180.02562 * 22 21 20
24 24 C 1.35661 * 119.53548 * 179.97438 * 23 22 21
25 25 C 1.39679 * 121.72287 * 0.02562 * 24 23 22
26 26 C 1.35641 * 121.81952 * 359.97438 * 25 24 23
27 27 C 1.41150 * 119.59252 * 0.02562 * 26 25 24
28 28 N 1.32069 * 134.67686 * 180.36069 * 27 26 25
29 29 C 1.44576 * 118.64501 * 206.54702 * 9 7 2
30 30 H 0.97000 * 120.00099 * 0.02562 * 1 2 3
31 31 H 1.09004 * 108.94507 * 17.20076 * 10 9 7
32 32 H 1.08993 * 108.96478 * 258.56047 * 10 9 7
33 33 H 1.08996 * 109.36790 * 199.25789 * 11 10 9
34 34 H 1.08996 * 109.26467 * 79.57356 * 11 10 9
35 35 H 1.09002 * 109.48795 * 331.91435 * 12 11 10
36 36 H 1.09004 * 109.50475 * 211.86626 * 12 11 10
37 37 H 1.08996 * 108.51511 * 153.73249 * 13 12 11
38 38 H 1.08999 * 108.51181 * 36.23621 * 13 12 11
39 39 H 0.97006 * 120.00117 * 334.13153 * 16 14 13
40 40 H 1.08994 * 109.47130 * 299.99702 * 19 17 16
41 41 H 1.09000 * 109.47126 * 60.00180 * 19 17 16
42 42 H 1.07998 * 126.05228 * 0.02562 * 21 20 19
43 43 H 1.08001 * 120.23909 * 359.95579 * 23 22 21
44 44 H 1.07991 * 119.13601 * 179.97438 * 24 23 22
45 45 H 1.08000 * 119.09149 * 179.97438 * 25 24 23
46 46 H 1.08003 * 120.20366 * 180.02562 * 26 25 24
47 47 H 1.08998 * 109.44873 * 150.68597 * 29 9 7
48 48 H 1.09000 * 109.44670 * 30.74451 * 29 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 2.4977 2.0463 -1.4001
5 1 1.4476 2.6527 0.6999
6 1 3.5477 1.4402 0.7001
7 6 2.0103 -1.2022 0.0005
8 1 3.0600 -1.2195 0.2539
9 7 1.3640 -2.3661 -0.3201
10 6 0.1806 -2.2986 -1.1994
11 6 0.1735 -3.4245 -2.2493
12 6 1.5653 -3.6358 -2.7922
13 6 2.2725 -4.7074 -1.9680
14 6 2.9231 -4.2030 -0.7490
15 1 3.6421 -3.4290 -1.0176
16 7 3.6259 -5.3029 -0.0839
17 6 4.6847 -5.0445 0.7092
18 8 5.0558 -3.9014 0.8717
19 6 5.4079 -6.1760 1.3929
20 7 6.5128 -5.6382 2.1906
21 6 6.6967 -5.8617 3.4988
22 6 7.8403 -5.1895 3.8883
23 6 8.5401 -5.0391 5.1045
24 6 9.6668 -4.2843 5.1388
25 6 10.1584 -3.6462 3.9976
26 6 9.5358 -3.7484 2.7969
27 6 8.3575 -4.5177 2.6859
28 7 7.5351 -4.8193 1.6975
29 6 1.8685 -3.6097 0.2175
30 1 -0.4850 0.8400 -0.0004
31 1 0.1750 -1.3366 -1.7119
32 1 -0.7190 -2.3779 -0.5892
33 1 -0.4957 -3.1531 -3.0657
34 1 -0.1774 -4.3463 -1.7856
35 1 2.1248 -2.7023 -2.7319
36 1 1.5055 -3.9573 -3.8320
37 1 3.0289 -5.1818 -2.5931
38 1 1.5409 -5.4632 -1.6823
39 1 3.3294 -6.2172 -0.2142
40 1 4.7153 -6.7092 2.0440
41 1 5.8021 -6.8614 0.6426
42 1 6.0640 -6.4616 4.1362
43 1 8.1812 -5.5212 6.0018
44 1 10.1971 -4.1732 6.0730
45 1 11.0592 -3.0552 4.0734
46 1 9.9391 -3.2443 1.9311
47 1 1.0457 -4.3150 0.3342
48 1 2.3288 -3.4253 1.1882
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001034490894.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:41:02
Heat of formation + Delta-G solvation = 67.457311 kcal
Electronic energy + Delta-G solvation = -29722.655372 eV
Core-core repulsion = 25779.075380 eV
Total energy + Delta-G solvation = -3943.579992 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-42.27902 -40.97940 -39.29837 -38.05825 -36.26561 -34.88229 -33.89134 -32.94330
-32.70214 -31.64655 -29.70562 -28.79802 -27.84468 -25.90783 -25.05552 -23.99698
-22.88027 -21.74345 -21.65510 -21.35982 -20.85438 -18.65555 -18.58213 -18.13156
-17.86968 -17.31437 -16.81498 -16.50994 -16.39361 -16.31412 -15.71969 -15.47597
-15.06538 -14.94531 -14.81660 -14.61589 -14.28909 -14.12164 -13.94821 -13.85039
-13.62381 -13.13970 -13.05520 -12.88327 -12.75937 -12.53014 -12.47590 -12.36263
-12.35293 -12.10217 -11.68163 -11.50414 -11.41487 -11.28955 -11.16932 -11.15355
-10.92251 -10.56071 -10.17350 -9.55397 -8.68431 -8.53775 -7.93691 -5.38923
-0.26384 0.94497 1.26078 1.35289 1.36270 1.46729 1.54695 1.58297
2.13725 2.45268 2.97534 3.18421 3.26172 3.56851 3.71795 3.80058
3.90202 3.99848 4.07585 4.12277 4.19149 4.24893 4.27004 4.40036
4.44337 4.49412 4.57196 4.68222 4.69824 4.74291 4.89085 4.97520
5.02273 5.09570 5.20648 5.22889 5.25685 5.33592 5.40110 5.57830
5.57990 5.61830 5.63678 5.68476 5.71974 5.80404 5.87287 6.10908
6.35295 6.59061 6.70407 7.13357 7.32619 7.90870 8.23405 9.10035
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.011699 B = 0.002973 C = 0.002524
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2392.740995 B = 9414.797400 C =11088.933456
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.927 5.927
2 C -0.038 4.038
3 Si 0.952 3.048
4 H -0.280 1.280
5 H -0.284 1.284
6 H -0.287 1.287
7 C -0.262 4.262
8 H 0.040 0.960
9 N -0.597 5.597
10 C 0.183 3.817
11 C -0.129 4.129
12 C -0.100 4.100
13 C -0.107 4.107
14 C 0.136 3.864
15 H 0.034 0.966
16 N -0.701 5.701
17 C 0.486 3.514
18 O -0.570 6.570
19 C 0.108 3.892
20 N -0.316 5.316
21 C 0.094 3.906
22 C -0.238 4.238
23 C -0.038 4.038
24 C -0.174 4.174
25 C -0.070 4.070
26 C -0.144 4.144
27 C 0.065 3.935
28 N -0.340 5.340
29 C 0.161 3.839
30 H 0.251 0.749
31 H 0.037 0.963
32 H -0.002 1.002
33 H 0.070 0.930
34 H 0.071 0.929
35 H 0.032 0.968
36 H 0.083 0.917
37 H 0.074 0.926
38 H 0.088 0.912
39 H 0.421 0.579
40 H 0.187 0.813
41 H 0.153 0.847
42 H 0.240 0.760
43 H 0.156 0.844
44 H 0.151 0.849
45 H 0.149 0.851
46 H 0.117 0.883
47 H 0.056 0.944
48 H 0.010 0.990
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.997 -22.084 5.368 25.248
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.573 5.573
2 C -0.234 4.234
3 Si 0.781 3.219
4 H -0.207 1.207
5 H -0.210 1.210
6 H -0.213 1.213
7 C -0.393 4.393
8 H 0.058 0.942
9 N -0.319 5.319
10 C 0.059 3.941
11 C -0.168 4.168
12 C -0.138 4.138
13 C -0.145 4.145
14 C 0.029 3.971
15 H 0.052 0.948
16 N -0.355 5.355
17 C 0.271 3.729
18 O -0.447 6.447
19 C -0.015 4.015
20 N -0.090 5.090
21 C -0.062 4.062
22 C -0.247 4.247
23 C -0.058 4.058
24 C -0.194 4.194
25 C -0.092 4.092
26 C -0.166 4.166
27 C -0.089 4.089
28 N -0.166 5.166
29 C 0.033 3.967
30 H 0.061 0.939
31 H 0.055 0.945
32 H 0.016 0.984
33 H 0.089 0.911
34 H 0.089 0.911
35 H 0.051 0.949
36 H 0.101 0.899
37 H 0.093 0.907
38 H 0.107 0.893
39 H 0.259 0.741
40 H 0.204 0.796
41 H 0.171 0.829
42 H 0.256 0.744
43 H 0.174 0.826
44 H 0.169 0.831
45 H 0.167 0.833
46 H 0.135 0.865
47 H 0.075 0.925
48 H 0.028 0.972
Dipole moment (debyes) X Y Z Total
from point charges 10.716 -21.054 4.071 23.973
hybrid contribution 0.374 1.408 0.554 1.559
sum 11.091 -19.646 4.626 23.030
Atomic orbital electron populations
1.70187 1.05918 1.25709 1.55449 1.25553 0.96032 1.00668 1.01145
0.85504 0.77823 0.80732 0.77836 1.20656 1.20964 1.21313 1.19260
0.91719 0.86830 1.41519 0.94228 1.43706 1.32367 1.01818 1.54023
1.20878 0.86634 0.96607 0.89990 1.21935 0.97326 0.99159 0.98375
1.20822 0.95722 0.98281 0.99013 1.20503 1.00463 0.98836 0.94717
1.20665 0.93896 0.88239 0.94331 0.94799 1.45766 1.30459 1.11161
1.48135 1.21236 0.80927 0.90688 0.80004 1.90880 1.66389 1.24997
1.62427 1.22144 0.86891 0.93676 0.98834 1.48286 1.18897 1.34151
1.07687 1.23500 0.97631 0.99830 0.85206 1.20080 1.00424 1.07919
0.96310 1.20655 0.93547 0.96535 0.95074 1.20895 0.98387 1.00820
0.99259 1.21001 0.99382 0.97327 0.91487 1.20091 0.94491 1.02284
0.99701 1.21474 0.96363 0.98643 0.92393 1.77770 1.01336 1.15733
1.21795 1.20979 0.94540 0.87688 0.93516 0.93940 0.94469 0.98409
0.91113 0.91075 0.94864 0.89869 0.90711 0.89350 0.74067 0.79607
0.82948 0.74421 0.82614 0.83132 0.83346 0.86513 0.92533 0.97167
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -56.45 11.01 21.65 0.24 -56.22 16
2 C -0.04 -2.27 4.87 84.86 0.41 -1.86 16
3 Si 0.95 49.16 29.58 68.60 2.03 51.19 16
4 H -0.28 -14.03 7.11 99.48 0.71 -13.32 16
5 H -0.28 -14.21 7.11 99.48 0.71 -13.51 16
6 H -0.29 -15.14 7.11 99.48 0.71 -14.44 16
7 C -0.26 -15.81 9.44 84.03 0.79 -15.02 16
8 H 0.04 2.58 7.88 -2.91 -0.02 2.55 16
9 N -0.60 -30.90 2.27 -698.44 -1.58 -32.49 16
10 C 0.18 8.83 4.67 86.49 0.40 9.23 16
11 C -0.13 -4.40 5.71 30.23 0.17 -4.22 16
12 C -0.10 -3.17 5.51 29.76 0.16 -3.01 16
13 C -0.11 -2.85 4.55 28.61 0.13 -2.72 16
14 C 0.14 4.70 2.35 43.79 0.10 4.81 16
15 H 0.03 1.56 7.55 -2.39 -0.02 1.54 16
16 N -0.70 -16.92 5.05 -448.29 -2.26 -19.19 16
17 C 0.49 14.21 7.81 87.66 0.68 14.90 16
18 O -0.57 -25.87 15.32 -3.02 -0.05 -25.92 16
19 C 0.11 1.75 6.93 85.63 0.59 2.34 16
20 N -0.32 -8.06 3.35 -350.06 -1.17 -9.24 16
21 C 0.09 1.85 11.45 84.37 0.97 2.82 16
22 C -0.24 -6.04 6.33 -20.23 -0.13 -6.17 16
23 C -0.04 -0.74 10.09 22.38 0.23 -0.51 16
24 C -0.17 -3.26 9.90 22.02 0.22 -3.04 16
25 C -0.07 -1.53 9.89 22.02 0.22 -1.31 16
26 C -0.14 -4.22 10.08 22.38 0.23 -4.00 16
27 C 0.06 2.15 7.49 42.16 0.32 2.47 16
28 N -0.34 -12.25 11.56 -48.70 -0.56 -12.81 16
29 C 0.16 6.85 5.24 87.37 0.46 7.31 16
30 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16
31 H 0.04 2.04 6.33 -2.38 -0.02 2.03 16
32 H 0.00 -0.12 8.03 -2.39 -0.02 -0.13 16
33 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16
34 H 0.07 2.08 7.32 -2.39 -0.02 2.06 16
35 H 0.03 1.35 7.48 -2.39 -0.02 1.33 16
36 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16
37 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16
38 H 0.09 1.82 7.36 -2.39 -0.02 1.81 16
39 H 0.42 5.33 8.58 -92.70 -0.80 4.54 16
40 H 0.19 0.80 8.04 -2.39 -0.02 0.78 16
41 H 0.15 1.48 8.14 -2.39 -0.02 1.46 16
42 H 0.24 1.67 8.06 -2.91 -0.02 1.64 16
43 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16
44 H 0.15 1.79 8.06 -2.92 -0.02 1.76 16
45 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16
46 H 0.12 3.34 8.06 -2.91 -0.02 3.31 16
47 H 0.06 2.10 8.07 -2.39 -0.02 2.08 16
48 H 0.01 0.49 7.98 -2.39 -0.02 0.47 16
Total: -1.00 -95.55 387.55 2.77 -92.78
By element:
Atomic # 1 Polarization: 9.70 SS G_CDS: 0.17 Total: 9.87 kcal
Atomic # 6 Polarization: -3.94 SS G_CDS: 5.96 Total: 2.02 kcal
Atomic # 7 Polarization: -124.59 SS G_CDS: -5.35 Total: -129.94 kcal
Atomic # 8 Polarization: -25.87 SS G_CDS: -0.05 Total: -25.92 kcal
Atomic # 14 Polarization: 49.16 SS G_CDS: 2.03 Total: 51.19 kcal
Total: -95.55 2.77 -92.78 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001034490894.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 160.239 kcal
(2) G-P(sol) polarization free energy of solvation -95.548 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.691 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.766 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.781 kcal
(6) G-S(sol) free energy of system = (1) + (5) 67.457 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds