Wall clock time and date at job start Sat Apr 11 2020 06:40:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31620 * 1
3 3 Si 1.86793 * 119.99923 * 2 1
4 4 H 1.48501 * 109.47275 * 270.00243 * 3 2 1
5 5 H 1.48504 * 109.47301 * 30.00380 * 3 2 1
6 6 H 1.48503 * 109.46992 * 149.99968 * 3 2 1
7 7 C 1.38810 * 119.99874 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00220 * 359.97438 * 7 2 1
9 9 N 1.36937 * 119.99724 * 179.97438 * 7 2 1
10 10 C 1.46507 * 119.99604 * 173.82948 * 9 7 2
11 11 C 1.52998 * 109.47451 * 63.19752 * 10 9 7
12 12 N 1.46502 * 109.46898 * 54.59448 * 11 10 9
13 13 C 1.34772 * 119.99805 * 176.13027 * 12 11 10
14 14 O 1.21597 * 120.00407 * 0.02562 * 13 12 11
15 15 C 1.47516 * 120.00195 * 179.97438 * 13 12 11
16 16 C 1.41043 * 119.39277 * 0.02562 * 15 13 12
17 17 C 1.35190 * 121.65834 * 179.97438 * 16 15 13
18 18 C 1.41374 * 119.92882 * 359.97438 * 17 16 15
19 19 N 1.31931 * 134.39227 * 180.02562 * 18 17 16
20 20 N 1.39926 * 109.06101 * 179.97438 * 19 18 17
21 21 H 0.96998 * 124.98350 * 179.97438 * 20 19 18
22 22 C 1.33820 * 110.02537 * 0.02562 * 20 19 18
23 23 C 1.38542 * 107.83942 * 0.02562 * 22 20 19
24 24 C 1.38220 * 119.39701 * 179.97438 * 15 13 12
25 25 C 1.53001 * 109.46539 * 183.19805 * 10 9 7
26 26 C 1.52999 * 109.47600 * 60.00073 * 25 10 9
27 27 C 1.52998 * 109.47097 * 59.99469 * 26 25 10
28 28 C 1.52999 * 109.47572 * 300.00398 * 27 26 25
29 29 C 1.52998 * 109.47053 * 303.19658 * 10 9 7
30 30 H 0.96997 * 120.00010 * 359.97438 * 1 2 3
31 31 H 0.96998 * 120.00177 * 353.82651 * 9 7 2
32 32 H 1.09006 * 109.47111 * 294.59808 * 11 10 9
33 33 H 1.08991 * 109.47321 * 174.59456 * 11 10 9
34 34 H 0.97003 * 120.00431 * 356.12783 * 12 11 10
35 35 H 1.08003 * 119.17068 * 0.02562 * 16 15 13
36 36 H 1.08002 * 120.03386 * 180.27026 * 17 16 15
37 37 H 1.08001 * 126.07782 * 180.02562 * 22 20 19
38 38 H 1.07993 * 120.32420 * 0.02867 * 24 15 13
39 39 H 1.09006 * 109.46827 * 179.97438 * 25 10 9
40 40 H 1.08993 * 109.47147 * 299.99653 * 25 10 9
41 41 H 1.09000 * 109.46710 * 300.00195 * 26 25 10
42 42 H 1.08994 * 109.47332 * 179.97438 * 26 25 10
43 43 H 1.09004 * 109.47383 * 180.02562 * 27 26 25
44 44 H 1.08997 * 109.47207 * 60.00154 * 27 26 25
45 45 H 1.09006 * 109.46950 * 300.00154 * 28 27 26
46 46 H 1.09001 * 109.47566 * 179.97438 * 28 27 26
47 47 H 1.08994 * 109.47225 * 60.00237 * 29 10 9
48 48 H 1.09000 * 109.46749 * 180.02562 * 29 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6177 0.0000
4 1 2.4976 2.0464 -1.4001
5 1 1.4476 2.6526 0.7001
6 1 3.5477 1.4401 0.7001
7 6 2.0102 -1.2021 -0.0005
8 1 1.4702 -2.1375 -0.0005
9 7 3.3796 -1.2021 -0.0011
10 6 4.1121 -2.4636 0.1348
11 6 3.8034 -3.3642 -1.0629
12 7 4.0934 -2.6423 -2.3043
13 6 3.9700 -3.2674 -3.4919
14 8 3.6174 -4.4305 -3.5331
15 6 4.2614 -2.5405 -4.7419
16 6 4.6689 -1.1916 -4.6794
17 6 4.9480 -0.4822 -5.7958
18 6 4.8344 -1.0924 -7.0661
19 7 5.0288 -0.6858 -8.3060
20 7 4.7571 -1.7430 -9.1815
21 1 4.8260 -1.6965 -10.1479
22 6 4.3871 -2.8272 -8.4898
23 6 4.4089 -2.4998 -7.1438
24 6 4.1312 -3.1939 -5.9529
25 6 5.6144 -2.1780 0.1843
26 6 5.9233 -1.2775 1.3820
27 6 5.4947 -1.9797 2.6720
28 6 3.9924 -2.2652 2.6225
29 6 3.6836 -3.1658 1.4248
30 1 -0.4850 0.8400 0.0004
31 1 3.8646 -0.3669 -0.0914
32 1 2.7505 -3.6459 -1.0439
33 1 4.4204 -4.2612 -1.0116
34 1 4.3742 -1.7144 -2.2716
35 1 4.7610 -0.7137 -3.7152
36 1 5.2621 0.5481 -5.7172
37 1 4.1192 -3.7868 -8.9068
38 1 3.8186 -4.2271 -5.9842
39 1 6.1595 -3.1166 0.2858
40 1 5.9197 -1.6778 -0.7347
41 1 5.3781 -0.3390 1.2809
42 1 6.9935 -1.0744 1.4175
43 1 5.7143 -1.3379 3.5253
44 1 6.0397 -2.9182 2.7731
45 1 3.4474 -1.3267 2.5214
46 1 3.6872 -2.7659 3.5414
47 1 2.6134 -3.3692 1.3895
48 1 4.2290 -4.1042 1.5260
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001115696008.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:40:54
Heat of formation + Delta-G solvation = 61.643721 kcal
Electronic energy + Delta-G solvation = -30217.812514 eV
Core-core repulsion = 26273.980425 eV
Total energy + Delta-G solvation = -3943.832089 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-41.46310 -39.68388 -38.60403 -36.64718 -34.51621 -33.29916 -32.29420 -31.47658
-30.76059 -30.31757 -29.38328 -28.84867 -25.83352 -24.06079 -23.45163 -22.80337
-22.10916 -20.84167 -20.54987 -19.99050 -18.40679 -18.32500 -17.75408 -17.44298
-16.74870 -15.58577 -15.17353 -15.03847 -14.82279 -14.51766 -14.30563 -14.17484
-14.02432 -13.86854 -13.54859 -13.42682 -13.08314 -12.80160 -12.59114 -12.26210
-12.20984 -11.92036 -11.73494 -11.65795 -11.58911 -11.20291 -10.96832 -10.81727
-10.59050 -10.51713 -10.46926 -10.26957 -10.03712 -9.86649 -9.63488 -9.51515
-9.33715 -8.98641 -8.87701 -8.43583 -7.74778 -7.29374 -5.75820 -3.12944
0.37615 1.42530 2.20263 2.42264 3.19654 3.34728 3.36061 3.44776
3.66068 4.04206 4.11170 4.37131 4.57802 4.87953 5.00246 5.04243
5.09265 5.17287 5.18739 5.24390 5.35022 5.42887 5.46908 5.55639
5.66483 5.75425 5.89568 5.95083 5.98967 6.03924 6.08918 6.15340
6.19413 6.27651 6.34099 6.36349 6.42599 6.48581 6.54584 6.63522
6.65504 6.74651 6.75696 6.77294 6.97586 7.05924 7.12069 7.34652
7.99476 8.06839 8.42621 8.70979 9.19623 9.91296 10.10388 11.42259
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.012162 B = 0.003344 C = 0.003015
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2301.773688 B = 8370.562686 C = 9284.005638
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.931 5.931
2 C 0.009 3.991
3 Si 0.874 3.126
4 H -0.285 1.285
5 H -0.294 1.294
6 H -0.275 1.275
7 C -0.235 4.235
8 H 0.091 0.909
9 N -0.736 5.736
10 C 0.197 3.803
11 C 0.117 3.883
12 N -0.697 5.697
13 C 0.557 3.443
14 O -0.557 6.557
15 C -0.165 4.165
16 C -0.046 4.046
17 C -0.113 4.113
18 C 0.120 3.880
19 N -0.312 5.312
20 N -0.426 5.426
21 H 0.444 0.556
22 C 0.099 3.901
23 C -0.218 4.218
24 C 0.029 3.971
25 C -0.118 4.118
26 C -0.117 4.117
27 C -0.114 4.114
28 C -0.110 4.110
29 C -0.114 4.114
30 H 0.258 0.742
31 H 0.360 0.640
32 H 0.070 0.930
33 H 0.056 0.944
34 H 0.399 0.601
35 H 0.131 0.869
36 H 0.133 0.867
37 H 0.192 0.808
38 H 0.140 0.860
39 H 0.064 0.936
40 H 0.057 0.943
41 H 0.066 0.934
42 H 0.051 0.949
43 H 0.051 0.949
44 H 0.052 0.948
45 H 0.079 0.921
46 H 0.047 0.953
47 H 0.070 0.930
48 H 0.047 0.953
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.839 -5.324 -11.376 18.688
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.578 5.578
2 C -0.186 4.186
3 Si 0.704 3.296
4 H -0.212 1.212
5 H -0.220 1.220
6 H -0.201 1.201
7 C -0.364 4.364
8 H 0.109 0.891
9 N -0.380 5.380
10 C 0.106 3.894
11 C -0.009 4.009
12 N -0.347 5.347
13 C 0.345 3.655
14 O -0.438 6.438
15 C -0.169 4.169
16 C -0.069 4.069
17 C -0.134 4.134
18 C -0.034 4.034
19 N -0.140 5.140
20 N -0.125 5.125
21 H 0.288 0.712
22 C -0.060 4.060
23 C -0.228 4.228
24 C 0.007 3.993
25 C -0.156 4.156
26 C -0.155 4.155
27 C -0.152 4.152
28 C -0.147 4.147
29 C -0.154 4.154
30 H 0.068 0.932
31 H 0.194 0.806
32 H 0.088 0.912
33 H 0.075 0.925
34 H 0.235 0.765
35 H 0.149 0.851
36 H 0.151 0.849
37 H 0.209 0.791
38 H 0.157 0.843
39 H 0.083 0.917
40 H 0.076 0.924
41 H 0.085 0.915
42 H 0.070 0.930
43 H 0.070 0.930
44 H 0.071 0.929
45 H 0.098 0.902
46 H 0.066 0.934
47 H 0.089 0.911
48 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges 13.694 -5.150 -12.099 18.985
hybrid contribution 0.270 1.164 -0.092 1.199
sum 13.964 -3.986 -12.190 18.960
Atomic orbital electron populations
1.69689 1.05111 1.25632 1.57411 1.24636 0.95051 0.96840 1.02115
0.86731 0.79449 0.85668 0.77727 1.21196 1.22016 1.20113 1.18924
0.80358 0.94500 1.42654 0.89088 1.42818 1.04020 1.02330 1.88786
1.19788 0.90102 0.87465 0.92082 1.21856 1.01292 0.94203 0.83559
1.45662 1.67774 1.15816 1.05470 1.18049 0.77632 0.86298 0.83559
1.90726 1.48548 1.16966 1.87526 1.19601 1.08885 0.94832 0.93622
1.20761 0.94736 0.92838 0.98573 1.19722 1.05594 1.00247 0.87833
1.21059 0.96762 0.92903 0.92701 1.77656 1.29329 1.07792 0.99189
1.46316 1.47836 1.08041 1.10305 0.71204 1.22839 0.98100 0.93327
0.91721 1.19576 1.14485 0.95746 0.92954 1.20639 0.90856 0.98986
0.88780 1.21750 0.96072 0.99835 0.97921 1.21496 0.99611 0.99462
0.94886 1.21496 0.97249 0.99505 0.96920 1.21375 0.95009 1.01483
0.96862 1.21765 1.01885 0.96878 0.94845 0.93168 0.80608 0.91201
0.92540 0.76475 0.85132 0.84949 0.79081 0.84258 0.91689 0.92414
0.91522 0.93021 0.93007 0.92894 0.90237 0.93406 0.91085 0.93431
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -28.20 13.97 55.49 0.78 -27.43 16
2 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16
3 Si 0.87 20.78 27.67 -169.99 -4.70 16.08 16
4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16
5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16
6 H -0.28 -6.05 6.61 56.52 0.37 -5.67 16
7 C -0.23 -5.95 9.18 -15.06 -0.14 -6.08 16
8 H 0.09 2.56 7.01 -52.48 -0.37 2.20 16
9 N -0.74 -14.96 3.18 -47.23 -0.15 -15.11 16
10 C 0.20 3.33 0.41 -131.82 -0.05 3.27 16
11 C 0.12 2.06 4.37 -4.04 -0.02 2.05 16
12 N -0.70 -11.83 5.03 -61.36 -0.31 -12.14 16
13 C 0.56 9.84 7.75 -12.48 -0.10 9.74 16
14 O -0.56 -11.34 16.26 5.28 0.09 -11.25 16
15 C -0.16 -2.49 5.86 -105.06 -0.62 -3.11 16
16 C -0.05 -0.63 9.39 -39.60 -0.37 -1.01 16
17 C -0.11 -1.49 10.05 -39.47 -0.40 -1.89 16
18 C 0.12 1.63 7.49 -82.98 -0.62 1.01 16
19 N -0.31 -3.93 12.69 33.30 0.42 -3.51 16
20 N -0.43 -3.45 7.17 30.87 0.22 -3.22 16
21 H 0.44 1.72 8.96 -182.73 -1.64 0.09 16
22 C 0.10 0.78 12.09 -16.57 -0.20 0.58 16
23 C -0.22 -2.63 6.32 -105.23 -0.66 -3.29 16
24 C 0.03 0.39 9.64 -38.70 -0.37 0.02 16
25 C -0.12 -1.66 4.65 -26.73 -0.12 -1.78 16
26 C -0.12 -1.62 5.75 -26.73 -0.15 -1.78 16
27 C -0.11 -1.57 5.92 -26.73 -0.16 -1.73 16
28 C -0.11 -1.77 5.77 -26.73 -0.15 -1.93 16
29 C -0.11 -1.91 4.51 -26.73 -0.12 -2.03 16
30 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16
31 H 0.36 7.27 4.57 -40.82 -0.19 7.09 16
32 H 0.07 1.45 7.52 -51.93 -0.39 1.06 16
33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16
34 H 0.40 6.32 5.33 -40.82 -0.22 6.10 16
35 H 0.13 1.63 6.27 -52.48 -0.33 1.30 16
36 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16
37 H 0.19 0.62 8.06 -52.49 -0.42 0.19 16
38 H 0.14 1.75 7.57 -52.49 -0.40 1.35 16
39 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16
40 H 0.06 0.77 7.29 -51.93 -0.38 0.39 16
41 H 0.07 1.06 6.93 -51.93 -0.36 0.70 16
42 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16
43 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16
45 H 0.08 1.54 7.60 -51.93 -0.39 1.14 16
46 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16
47 H 0.07 1.36 7.22 -51.93 -0.38 0.98 16
48 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16
LS Contribution 379.16 15.07 5.71 5.71
Total: -1.00 -34.23 379.16 -10.31 -44.54
By element:
Atomic # 1 Polarization: 22.13 SS G_CDS: -8.00 Total: 14.13 kcal
Atomic # 6 Polarization: -3.44 SS G_CDS: -4.36 Total: -7.80 kcal
Atomic # 7 Polarization: -62.37 SS G_CDS: 0.96 Total: -61.41 kcal
Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.25 kcal
Atomic # 14 Polarization: 20.78 SS G_CDS: -4.70 Total: 16.08 kcal
Total LS contribution 5.71 Total: 5.71 kcal
Total: -34.23 -10.31 -44.54 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001115696008.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 106.183 kcal
(2) G-P(sol) polarization free energy of solvation -34.234 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.949 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.305 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.540 kcal
(6) G-S(sol) free energy of system = (1) + (5) 61.644 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds