Wall clock time and date at job start Sat Apr 11 2020 06:40:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31620 * 1
3 3 Si 1.86793 * 119.99923 * 2 1
4 4 H 1.48501 * 109.47275 * 270.00243 * 3 2 1
5 5 H 1.48504 * 109.47301 * 30.00380 * 3 2 1
6 6 H 1.48503 * 109.46992 * 149.99968 * 3 2 1
7 7 C 1.38810 * 119.99874 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00220 * 359.97438 * 7 2 1
9 9 N 1.36937 * 119.99724 * 179.97438 * 7 2 1
10 10 C 1.46507 * 119.99604 * 173.82948 * 9 7 2
11 11 C 1.52998 * 109.47451 * 63.19752 * 10 9 7
12 12 N 1.46502 * 109.46898 * 54.59448 * 11 10 9
13 13 C 1.34772 * 119.99805 * 176.13027 * 12 11 10
14 14 O 1.21597 * 120.00407 * 0.02562 * 13 12 11
15 15 C 1.47516 * 120.00195 * 179.97438 * 13 12 11
16 16 C 1.41043 * 119.39277 * 0.02562 * 15 13 12
17 17 C 1.35190 * 121.65834 * 179.97438 * 16 15 13
18 18 C 1.41374 * 119.92882 * 359.97438 * 17 16 15
19 19 N 1.31931 * 134.39227 * 180.02562 * 18 17 16
20 20 N 1.39926 * 109.06101 * 179.97438 * 19 18 17
21 21 H 0.96998 * 124.98350 * 179.97438 * 20 19 18
22 22 C 1.33820 * 110.02537 * 0.02562 * 20 19 18
23 23 C 1.38542 * 107.83942 * 0.02562 * 22 20 19
24 24 C 1.38220 * 119.39701 * 179.97438 * 15 13 12
25 25 C 1.53001 * 109.46539 * 183.19805 * 10 9 7
26 26 C 1.52999 * 109.47600 * 60.00073 * 25 10 9
27 27 C 1.52998 * 109.47097 * 59.99469 * 26 25 10
28 28 C 1.52999 * 109.47572 * 300.00398 * 27 26 25
29 29 C 1.52998 * 109.47053 * 303.19658 * 10 9 7
30 30 H 0.96997 * 120.00010 * 359.97438 * 1 2 3
31 31 H 0.96998 * 120.00177 * 353.82651 * 9 7 2
32 32 H 1.09006 * 109.47111 * 294.59808 * 11 10 9
33 33 H 1.08991 * 109.47321 * 174.59456 * 11 10 9
34 34 H 0.97003 * 120.00431 * 356.12783 * 12 11 10
35 35 H 1.08003 * 119.17068 * 0.02562 * 16 15 13
36 36 H 1.08002 * 120.03386 * 180.27026 * 17 16 15
37 37 H 1.08001 * 126.07782 * 180.02562 * 22 20 19
38 38 H 1.07993 * 120.32420 * 0.02867 * 24 15 13
39 39 H 1.09006 * 109.46827 * 179.97438 * 25 10 9
40 40 H 1.08993 * 109.47147 * 299.99653 * 25 10 9
41 41 H 1.09000 * 109.46710 * 300.00195 * 26 25 10
42 42 H 1.08994 * 109.47332 * 179.97438 * 26 25 10
43 43 H 1.09004 * 109.47383 * 180.02562 * 27 26 25
44 44 H 1.08997 * 109.47207 * 60.00154 * 27 26 25
45 45 H 1.09006 * 109.46950 * 300.00154 * 28 27 26
46 46 H 1.09001 * 109.47566 * 179.97438 * 28 27 26
47 47 H 1.08994 * 109.47225 * 60.00237 * 29 10 9
48 48 H 1.09000 * 109.46749 * 180.02562 * 29 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6177 0.0000
4 1 2.4976 2.0464 -1.4001
5 1 1.4476 2.6526 0.7001
6 1 3.5477 1.4401 0.7001
7 6 2.0102 -1.2021 -0.0005
8 1 1.4702 -2.1375 -0.0005
9 7 3.3796 -1.2021 -0.0011
10 6 4.1121 -2.4636 0.1348
11 6 3.8034 -3.3642 -1.0629
12 7 4.0934 -2.6423 -2.3043
13 6 3.9700 -3.2674 -3.4919
14 8 3.6174 -4.4305 -3.5331
15 6 4.2614 -2.5405 -4.7419
16 6 4.6689 -1.1916 -4.6794
17 6 4.9480 -0.4822 -5.7958
18 6 4.8344 -1.0924 -7.0661
19 7 5.0288 -0.6858 -8.3060
20 7 4.7571 -1.7430 -9.1815
21 1 4.8260 -1.6965 -10.1479
22 6 4.3871 -2.8272 -8.4898
23 6 4.4089 -2.4998 -7.1438
24 6 4.1312 -3.1939 -5.9529
25 6 5.6144 -2.1780 0.1843
26 6 5.9233 -1.2775 1.3820
27 6 5.4947 -1.9797 2.6720
28 6 3.9924 -2.2652 2.6225
29 6 3.6836 -3.1658 1.4248
30 1 -0.4850 0.8400 0.0004
31 1 3.8646 -0.3669 -0.0914
32 1 2.7505 -3.6459 -1.0439
33 1 4.4204 -4.2612 -1.0116
34 1 4.3742 -1.7144 -2.2716
35 1 4.7610 -0.7137 -3.7152
36 1 5.2621 0.5481 -5.7172
37 1 4.1192 -3.7868 -8.9068
38 1 3.8186 -4.2271 -5.9842
39 1 6.1595 -3.1166 0.2858
40 1 5.9197 -1.6778 -0.7347
41 1 5.3781 -0.3390 1.2809
42 1 6.9935 -1.0744 1.4175
43 1 5.7143 -1.3379 3.5253
44 1 6.0397 -2.9182 2.7731
45 1 3.4474 -1.3267 2.5214
46 1 3.6872 -2.7659 3.5414
47 1 2.6134 -3.3692 1.3895
48 1 4.2290 -4.1042 1.5260
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001115696008.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:40:53
Heat of formation + Delta-G solvation = 38.092394 kcal
Electronic energy + Delta-G solvation = -30218.833776 eV
Core-core repulsion = 26273.980425 eV
Total energy + Delta-G solvation = -3944.853351 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-42.31936 -41.03924 -39.92885 -37.69523 -35.91824 -35.07581 -33.24028 -33.09258
-31.85527 -31.56710 -30.82366 -29.95527 -27.04702 -25.37964 -25.08582 -23.89699
-23.34137 -21.82422 -21.68119 -21.27913 -19.78669 -19.68724 -19.17967 -18.65068
-17.67409 -16.97366 -16.51091 -16.29915 -16.14276 -15.94021 -15.68000 -15.30739
-15.13669 -15.00423 -14.87733 -14.79697 -14.26032 -14.04541 -13.94931 -13.91924
-13.58937 -13.29054 -12.92127 -12.82751 -12.75695 -12.65066 -12.51652 -12.33310
-12.07483 -11.86992 -11.65508 -11.42955 -11.39619 -11.30399 -11.14358 -10.98450
-10.72014 -10.69588 -9.98543 -9.81081 -9.21532 -8.70142 -7.90471 -5.23432
-0.49508 0.37491 1.34982 1.41480 1.44705 1.52048 1.78826 1.99366
2.37645 2.56414 2.92188 3.20799 3.40357 3.58326 3.64221 3.88369
3.91991 3.97772 4.08522 4.09393 4.20488 4.35637 4.39359 4.43238
4.49116 4.53063 4.66051 4.74625 4.77311 4.80394 4.90976 4.97279
5.06168 5.08086 5.18837 5.24727 5.31691 5.32828 5.40921 5.45068
5.45195 5.51241 5.58614 5.65956 5.72194 5.76722 5.93299 6.20812
6.32852 6.49796 6.70577 7.20016 7.34328 7.93400 8.14063 9.31593
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.012162 B = 0.003344 C = 0.003015
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2301.773688 B = 8370.562686 C = 9284.005638
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.989 5.989
2 C -0.063 4.063
3 Si 0.940 3.060
4 H -0.280 1.280
5 H -0.310 1.310
6 H -0.243 1.243
7 C -0.196 4.196
8 H 0.051 0.949
9 N -0.731 5.731
10 C 0.195 3.805
11 C 0.124 3.876
12 N -0.696 5.696
13 C 0.555 3.445
14 O -0.593 6.593
15 C -0.200 4.200
16 C -0.050 4.050
17 C -0.123 4.123
18 C 0.102 3.898
19 N -0.346 5.346
20 N -0.407 5.407
21 H 0.464 0.536
22 C 0.145 3.855
23 C -0.253 4.253
24 C 0.045 3.955
25 C -0.112 4.112
26 C -0.116 4.116
27 C -0.109 4.109
28 C -0.108 4.108
29 C -0.114 4.114
30 H 0.251 0.749
31 H 0.366 0.634
32 H 0.026 0.974
33 H 0.072 0.928
34 H 0.405 0.595
35 H 0.136 0.864
36 H 0.143 0.857
37 H 0.248 0.752
38 H 0.145 0.855
39 H 0.088 0.912
40 H 0.068 0.932
41 H 0.045 0.955
42 H 0.081 0.919
43 H 0.062 0.938
44 H 0.075 0.925
45 H 0.041 0.959
46 H 0.056 0.944
47 H 0.032 0.968
48 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.418 -5.659 -13.105 22.520
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.641 5.641
2 C -0.254 4.254
3 Si 0.769 3.231
4 H -0.206 1.206
5 H -0.238 1.238
6 H -0.167 1.167
7 C -0.327 4.327
8 H 0.069 0.931
9 N -0.374 5.374
10 C 0.105 3.895
11 C -0.002 4.002
12 N -0.345 5.345
13 C 0.344 3.656
14 O -0.477 6.477
15 C -0.204 4.204
16 C -0.073 4.073
17 C -0.144 4.144
18 C -0.052 4.052
19 N -0.174 5.174
20 N -0.108 5.108
21 H 0.313 0.687
22 C -0.016 4.016
23 C -0.262 4.262
24 C 0.024 3.976
25 C -0.150 4.150
26 C -0.153 4.153
27 C -0.146 4.146
28 C -0.146 4.146
29 C -0.153 4.153
30 H 0.060 0.940
31 H 0.201 0.799
32 H 0.045 0.955
33 H 0.090 0.910
34 H 0.242 0.758
35 H 0.153 0.847
36 H 0.161 0.839
37 H 0.264 0.736
38 H 0.162 0.838
39 H 0.107 0.893
40 H 0.087 0.913
41 H 0.064 0.936
42 H 0.100 0.900
43 H 0.081 0.919
44 H 0.094 0.906
45 H 0.060 0.940
46 H 0.075 0.925
47 H 0.051 0.949
48 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges 17.363 -5.474 -13.853 22.877
hybrid contribution -0.866 1.052 0.243 1.384
sum 16.497 -4.422 -13.611 21.839
Atomic orbital electron populations
1.69895 1.07323 1.25978 1.60886 1.25357 0.95735 1.00679 1.03618
0.85632 0.79105 0.80445 0.77949 1.20612 1.23817 1.16723 1.18724
0.82491 0.92578 1.38907 0.93131 1.42723 1.02143 1.04128 1.88429
1.20010 0.92274 0.85626 0.91579 1.21712 0.98969 0.95188 0.84373
1.45633 1.67653 1.16033 1.05218 1.18501 0.76647 0.86000 0.84410
1.90687 1.50386 1.18513 1.88080 1.19451 1.12445 0.95650 0.92888
1.20748 0.95053 0.92375 0.99096 1.19872 1.05795 1.00795 0.87958
1.21264 0.97003 0.93817 0.93070 1.77601 1.30850 1.09711 0.99263
1.46398 1.45971 1.07202 1.11207 0.68745 1.23664 0.93459 0.94504
0.89970 1.19827 1.16642 0.95435 0.94338 1.20764 0.88851 0.99064
0.88941 1.21739 0.92948 1.01383 0.98919 1.21506 1.01185 0.98201
0.94454 1.21475 0.94808 1.00915 0.97425 1.21331 0.97094 0.99396
0.96761 1.21748 0.99884 0.98470 0.95209 0.94004 0.79940 0.95517
0.91014 0.75780 0.84665 0.83891 0.73598 0.83752 0.89328 0.91302
0.93639 0.90003 0.91893 0.90605 0.93974 0.92542 0.94925 0.90589
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.99 -63.29 13.97 21.65 0.30 -62.99 16
2 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16
3 Si 0.94 43.91 27.67 68.60 1.90 45.81 16
4 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16
5 H -0.31 -15.34 7.11 99.48 0.71 -14.63 16
6 H -0.24 -9.93 6.61 99.48 0.66 -9.27 16
7 C -0.20 -10.40 9.18 84.03 0.77 -9.63 16
8 H 0.05 3.08 7.01 -2.91 -0.02 3.06 16
9 N -0.73 -29.97 3.18 -303.33 -0.97 -30.94 16
10 C 0.20 6.52 0.41 3.60 0.00 6.52 16
11 C 0.12 4.47 4.37 86.38 0.38 4.85 16
12 N -0.70 -23.98 5.03 -466.29 -2.35 -26.33 16
13 C 0.55 20.08 7.75 86.69 0.67 20.75 16
14 O -0.59 -24.89 16.26 -4.02 -0.07 -24.95 16
15 C -0.20 -6.10 5.86 -20.15 -0.12 -6.21 16
16 C -0.05 -1.38 9.39 22.25 0.21 -1.17 16
17 C -0.12 -3.22 10.05 22.34 0.22 -2.99 16
18 C 0.10 2.65 7.49 42.27 0.32 2.97 16
19 N -0.35 -8.05 12.69 -48.55 -0.62 -8.66 16
20 N -0.41 -5.10 7.17 -56.25 -0.40 -5.51 16
21 H 0.46 1.69 8.96 -213.43 -1.91 -0.23 16
22 C 0.14 1.66 12.09 84.46 1.02 2.68 16
23 C -0.25 -5.57 6.32 -20.26 -0.13 -5.70 16
24 C 0.05 1.19 9.64 22.84 0.22 1.41 16
25 C -0.11 -2.81 4.65 30.59 0.14 -2.67 16
26 C -0.12 -2.80 5.75 30.59 0.18 -2.62 16
27 C -0.11 -2.62 5.92 30.59 0.18 -2.44 16
28 C -0.11 -3.40 5.77 30.60 0.18 -3.23 16
29 C -0.11 -3.80 4.51 30.60 0.14 -3.66 16
30 H 0.25 15.57 8.31 -92.71 -0.77 14.80 16
31 H 0.37 14.40 4.57 -92.71 -0.42 13.97 16
32 H 0.03 1.18 7.52 -2.38 -0.02 1.17 16
33 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16
34 H 0.40 12.81 5.33 -92.71 -0.49 12.31 16
35 H 0.14 3.39 6.27 -2.91 -0.02 3.37 16
36 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16
37 H 0.25 -0.02 8.06 -2.91 -0.02 -0.05 16
38 H 0.14 3.51 7.57 -2.91 -0.02 3.48 16
39 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16
40 H 0.07 1.61 7.29 -2.39 -0.02 1.60 16
41 H 0.04 1.30 6.93 -2.39 -0.02 1.28 16
42 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16
43 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16
44 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16
45 H 0.04 1.63 7.60 -2.38 -0.02 1.61 16
46 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16
47 H 0.03 1.32 7.22 -2.39 -0.02 1.30 16
48 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16
Total: -1.00 -81.32 379.16 0.79 -80.53
By element:
Atomic # 1 Polarization: 39.20 SS G_CDS: -1.86 Total: 37.34 kcal
Atomic # 6 Polarization: -9.14 SS G_CDS: 4.85 Total: -4.30 kcal
Atomic # 7 Polarization: -130.40 SS G_CDS: -4.03 Total: -134.43 kcal
Atomic # 8 Polarization: -24.89 SS G_CDS: -0.07 Total: -24.95 kcal
Atomic # 14 Polarization: 43.91 SS G_CDS: 1.90 Total: 45.81 kcal
Total: -81.32 0.79 -80.53 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001115696008.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 118.619 kcal
(2) G-P(sol) polarization free energy of solvation -81.317 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.302 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.791 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.526 kcal
(6) G-S(sol) free energy of system = (1) + (5) 38.092 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds