Wall clock time and date at job start Sat Apr 11 2020 06:40:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31621 * 1
3 3 Si 1.86801 * 119.99839 * 2 1
4 4 H 1.48504 * 109.47148 * 270.00374 * 3 2 1
5 5 H 1.48502 * 109.47060 * 29.99940 * 3 2 1
6 6 H 1.48491 * 109.47059 * 150.00268 * 3 2 1
7 7 C 1.38809 * 120.00126 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99855 * 166.36557 * 7 2 1
9 9 N 1.36933 * 120.00013 * 346.36332 * 7 2 1
10 10 C 1.46962 * 120.65535 * 328.81943 * 9 7 2
11 11 C 1.53197 * 108.88873 * 233.53191 * 10 9 7
12 12 C 1.53042 * 109.30912 * 305.43975 * 11 10 9
13 13 C 1.53046 * 109.53954 * 61.36512 * 12 11 10
14 14 C 1.46932 * 120.63136 * 148.99370 * 9 7 2
15 15 H 1.09004 * 109.58564 * 246.32661 * 14 9 7
16 16 C 1.53001 * 109.58559 * 6.60947 * 14 9 7
17 17 N 1.46493 * 109.46943 * 299.40630 * 16 14 9
18 18 C 1.34774 * 119.99871 * 179.97438 * 17 16 14
19 19 O 1.21287 * 120.00300 * 359.72462 * 18 17 16
20 20 C 1.50705 * 120.00391 * 180.02562 * 18 17 16
21 21 C 1.50699 * 109.47466 * 179.72887 * 20 18 17
22 22 N 1.30244 * 126.10364 * 269.68844 * 21 20 18
23 23 N 1.39877 * 110.08425 * 179.84138 * 22 21 20
24 24 H 0.96997 * 125.45617 * 180.18199 * 23 22 21
25 25 C 1.37041 * 109.07306 * 0.43299 * 23 22 21
26 26 C 1.39283 * 133.84344 * 179.75006 * 25 23 22
27 27 C 1.36593 * 119.84821 * 179.97438 * 26 25 23
28 28 C 1.38968 * 120.81648 * 0.02807 * 27 26 25
29 29 C 1.36460 * 120.62548 * 359.96822 * 28 27 26
30 30 C 1.39943 * 119.63806 * 0.02562 * 29 28 27
31 31 H 0.97000 * 120.00508 * 359.97438 * 1 2 3
32 32 H 1.08998 * 109.46832 * 113.74640 * 10 9 7
33 33 H 1.09002 * 109.71034 * 353.45723 * 10 9 7
34 34 H 1.08999 * 109.49882 * 185.49150 * 11 10 9
35 35 H 1.08992 * 109.49563 * 65.38959 * 11 10 9
36 36 H 1.08995 * 109.46123 * 301.34544 * 12 11 10
37 37 H 1.09001 * 109.44521 * 181.37833 * 12 11 10
38 38 H 1.08998 * 109.49655 * 178.67473 * 13 12 11
39 39 H 1.09004 * 109.49363 * 58.58571 * 13 12 11
40 40 H 1.08992 * 109.47048 * 179.40358 * 16 14 9
41 41 H 1.09000 * 109.46778 * 59.40634 * 16 14 9
42 42 H 0.97002 * 120.00773 * 359.97438 * 17 16 14
43 43 H 1.09006 * 109.46598 * 299.72951 * 20 18 17
44 44 H 1.09003 * 109.47030 * 59.72029 * 20 18 17
45 45 H 1.07995 * 120.08159 * 0.02562 * 26 25 23
46 46 H 1.08000 * 119.58940 * 180.02562 * 27 26 25
47 47 H 1.08005 * 119.68545 * 179.97438 * 28 27 26
48 48 H 1.07999 * 120.18172 * 180.02562 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 2.4976 2.0465 -1.4001
5 1 1.4476 2.6527 0.7000
6 1 3.5477 1.4402 0.6999
7 6 2.0103 -1.2021 -0.0005
8 1 3.0674 -1.2151 -0.2210
9 7 1.3546 -2.3714 0.2785
10 6 0.2059 -2.3860 1.1951
11 6 0.4568 -3.4299 2.2880
12 6 0.7587 -4.7816 1.6369
13 6 2.0215 -4.6664 0.7800
14 6 1.7884 -3.6366 -0.3298
15 1 1.0164 -3.9992 -1.0086
16 6 3.0890 -3.4138 -1.1043
17 7 2.8631 -2.4292 -2.1652
18 6 3.8753 -2.0731 -2.9807
19 8 4.9745 -2.5640 -2.8331
20 6 3.6431 -1.0597 -4.0717
21 6 4.9259 -0.8350 -4.8300
22 7 5.8337 0.0575 -4.5550
23 7 6.8865 -0.0298 -5.4718
24 1 7.6800 0.5279 -5.4721
25 6 6.6143 -1.0260 -6.3727
26 6 7.2896 -1.5384 -7.4778
27 6 6.7415 -2.5643 -8.1939
28 6 5.5136 -3.1069 -7.8347
29 6 4.8294 -2.6252 -6.7568
30 6 5.3701 -1.5745 -6.0070
31 1 -0.4851 0.8400 0.0004
32 1 -0.6968 -2.6456 0.6421
33 1 0.0859 -1.4027 1.6498
34 1 -0.4293 -3.5187 2.9165
35 1 1.3063 -3.1217 2.8973
36 1 -0.0810 -5.0775 1.0081
37 1 0.9134 -5.5316 2.4127
38 1 2.2492 -5.6352 0.3355
39 1 2.8563 -4.3466 1.4037
40 1 3.4147 -4.3556 -1.5459
41 1 3.8579 -3.0460 -0.4249
42 1 1.9850 -2.0335 -2.2808
43 1 2.8777 -1.4295 -4.7541
44 1 3.3125 -0.1196 -3.6301
45 1 8.2448 -1.1260 -7.7675
46 1 7.2690 -2.9587 -9.0499
47 1 5.0969 -3.9175 -8.4142
48 1 3.8758 -3.0525 -6.4838
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001752824843.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:40:05
Heat of formation + Delta-G solvation = 64.259955 kcal
Electronic energy + Delta-G solvation = -30027.919686 eV
Core-core repulsion = 26084.201046 eV
Total energy + Delta-G solvation = -3943.718640 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-41.27967 -39.15912 -37.70167 -37.15112 -34.14959 -33.26152 -33.05677 -31.01937
-30.25227 -29.90784 -29.70766 -28.25647 -25.84554 -24.57129 -23.06297 -22.21459
-22.15109 -21.05814 -20.38682 -19.41377 -19.00971 -17.87977 -16.92139 -16.89216
-16.09237 -15.63110 -15.39875 -15.22217 -14.69519 -14.58109 -14.20527 -14.02565
-13.96461 -13.75062 -13.44036 -13.15985 -12.92723 -12.83294 -12.47489 -12.17009
-12.03104 -11.98100 -11.90743 -11.55343 -11.17647 -11.13021 -10.94419 -10.74817
-10.62415 -10.54163 -10.28948 -10.18596 -10.14347 -9.99198 -9.55387 -9.44303
-9.21368 -8.68723 -8.57923 -8.20528 -8.00107 -6.65767 -5.84476 -3.30741
0.92519 1.47541 2.45641 2.70245 3.20849 3.33734 3.42317 3.47852
3.70788 3.96625 4.43622 4.48062 4.53013 4.71610 4.89278 5.13300
5.22879 5.31287 5.32373 5.37914 5.50262 5.52100 5.53660 5.64589
5.69463 5.73680 5.80151 5.93588 5.97685 6.06724 6.16106 6.27416
6.31873 6.36164 6.42511 6.44589 6.45528 6.59947 6.71167 6.73382
6.80842 6.85723 6.98775 7.19580 7.30153 7.38023 7.64824 7.66103
7.79727 8.26348 8.40572 8.87771 9.16317 9.77799 10.35943 11.22405
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.013925 B = 0.003172 C = 0.002741
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2010.308344 B = 8824.384764 C =10210.987291
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.899 5.899
2 C 0.010 3.990
3 Si 0.890 3.110
4 H -0.284 1.284
5 H -0.290 1.290
6 H -0.280 1.280
7 C -0.251 4.251
8 H 0.070 0.930
9 N -0.588 5.588
10 C 0.173 3.827
11 C -0.145 4.145
12 C -0.107 4.107
13 C -0.128 4.128
14 C 0.161 3.839
15 H 0.032 0.968
16 C 0.136 3.864
17 N -0.692 5.692
18 C 0.515 3.485
19 O -0.555 6.555
20 C -0.068 4.068
21 C 0.134 3.866
22 N -0.238 5.238
23 N -0.511 5.511
24 H 0.438 0.562
25 C 0.129 3.871
26 C -0.146 4.146
27 C -0.073 4.073
28 C -0.165 4.165
29 C -0.033 4.033
30 C -0.163 4.163
31 H 0.254 0.746
32 H 0.018 0.982
33 H 0.084 0.916
34 H 0.046 0.954
35 H 0.053 0.947
36 H 0.053 0.947
37 H 0.044 0.956
38 H 0.051 0.949
39 H 0.060 0.940
40 H 0.055 0.945
41 H 0.065 0.935
42 H 0.416 0.584
43 H 0.114 0.886
44 H 0.117 0.883
45 H 0.123 0.877
46 H 0.126 0.874
47 H 0.125 0.875
48 H 0.127 0.873
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.481 -5.949 -12.432 15.230
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.543 5.543
2 C -0.190 4.190
3 Si 0.720 3.280
4 H -0.211 1.211
5 H -0.216 1.216
6 H -0.205 1.205
7 C -0.381 4.381
8 H 0.088 0.912
9 N -0.312 5.312
10 C 0.048 3.952
11 C -0.184 4.184
12 C -0.145 4.145
13 C -0.168 4.168
14 C 0.054 3.946
15 H 0.050 0.950
16 C 0.012 3.988
17 N -0.343 5.343
18 C 0.299 3.701
19 O -0.434 6.434
20 C -0.110 4.110
21 C -0.045 4.045
22 N -0.051 5.051
23 N -0.225 5.225
24 H 0.282 0.718
25 C 0.012 3.988
26 C -0.168 4.168
27 C -0.093 4.093
28 C -0.185 4.185
29 C -0.054 4.054
30 C -0.171 4.171
31 H 0.064 0.936
32 H 0.036 0.964
33 H 0.102 0.898
34 H 0.065 0.935
35 H 0.071 0.929
36 H 0.071 0.929
37 H 0.062 0.938
38 H 0.070 0.930
39 H 0.079 0.921
40 H 0.073 0.927
41 H 0.083 0.917
42 H 0.253 0.747
43 H 0.132 0.868
44 H 0.135 0.865
45 H 0.141 0.859
46 H 0.144 0.856
47 H 0.143 0.857
48 H 0.145 0.855
Dipole moment (debyes) X Y Z Total
from point charges 7.486 -5.162 -11.520 14.677
hybrid contribution 0.318 0.885 -0.385 1.016
sum 7.804 -4.276 -11.905 14.863
Atomic orbital electron populations
1.70001 1.05126 1.25492 1.53725 1.25047 0.95154 0.98026 1.00739
0.86486 0.79372 0.84092 0.78066 1.21102 1.21621 1.20517 1.19201
0.91939 0.83937 1.42995 0.91232 1.44072 1.35458 1.02101 1.49589
1.20756 0.88438 0.97375 0.88626 1.22197 0.99924 0.96631 0.99629
1.21361 0.97541 0.97364 0.98221 1.21945 0.98156 0.98247 0.98413
1.20722 0.93182 0.88485 0.92197 0.95037 1.21271 0.98245 0.90474
0.88827 1.45931 1.13871 1.43255 1.31264 1.20038 0.84851 0.82545
0.82715 1.90678 1.24120 1.56025 1.72581 1.20093 0.92582 1.01761
0.96579 1.22759 0.95453 0.92864 0.93395 1.76606 0.96214 1.21522
1.10787 1.45874 1.20253 1.32181 1.24201 0.71778 1.18854 0.95494
0.91502 0.92908 1.19782 1.00965 1.00435 0.95648 1.20677 0.95334
0.94773 0.98538 1.20624 0.96332 1.02470 0.99041 1.20379 0.99143
0.92893 0.92979 1.19738 0.96458 1.01845 0.99018 0.93623 0.96370
0.89784 0.93546 0.92868 0.92865 0.93760 0.93040 0.92129 0.92718
0.91675 0.74667 0.86792 0.86479 0.85922 0.85580 0.85706 0.85520
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -23.91 11.22 55.49 0.62 -23.29 16
2 C 0.01 0.24 4.98 -17.43 -0.09 0.16 16
3 Si 0.89 21.00 29.58 -169.99 -5.03 15.97 16
4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16
5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16
6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16
7 C -0.25 -6.16 7.00 -15.06 -0.11 -6.27 16
8 H 0.07 1.77 5.85 -52.49 -0.31 1.47 16
9 N -0.59 -13.17 2.98 -164.74 -0.49 -13.66 16
10 C 0.17 3.85 5.26 -3.69 -0.02 3.83 16
11 C -0.14 -2.65 6.08 -26.61 -0.16 -2.81 16
12 C -0.11 -1.73 5.88 -26.69 -0.16 -1.89 16
13 C -0.13 -2.12 5.37 -26.61 -0.14 -2.27 16
14 C 0.16 3.04 3.00 -67.60 -0.20 2.84 16
15 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16
16 C 0.14 2.53 4.43 -4.05 -0.02 2.51 16
17 N -0.69 -12.74 3.86 -60.30 -0.23 -12.97 16
18 C 0.51 9.55 7.82 -10.98 -0.09 9.46 16
19 O -0.55 -12.15 16.03 5.55 0.09 -12.06 16
20 C -0.07 -1.06 6.30 -29.03 -0.18 -1.24 16
21 C 0.13 2.23 5.92 -80.19 -0.48 1.75 16
22 N -0.24 -4.13 12.55 34.84 0.44 -3.69 16
23 N -0.51 -7.17 7.37 32.36 0.24 -6.93 16
24 H 0.44 4.58 8.96 -182.77 -1.64 2.94 16
25 C 0.13 1.77 7.34 -84.18 -0.62 1.15 16
26 C -0.15 -1.57 10.03 -39.79 -0.40 -1.97 16
27 C -0.07 -0.70 9.96 -39.90 -0.40 -1.09 16
28 C -0.16 -1.69 9.97 -39.95 -0.40 -2.09 16
29 C -0.03 -0.41 10.07 -39.58 -0.40 -0.81 16
30 C -0.16 -2.43 6.33 -105.21 -0.67 -3.10 16
31 H 0.25 6.66 8.31 -40.82 -0.34 6.32 16
32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16
33 H 0.08 2.12 6.20 -51.93 -0.32 1.79 16
34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16
35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16
36 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16
37 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16
38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16
39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16
40 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16
41 H 0.06 1.36 7.40 -51.93 -0.38 0.97 16
42 H 0.42 7.80 7.43 -40.82 -0.30 7.50 16
43 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16
44 H 0.12 1.83 8.14 -51.93 -0.42 1.41 16
45 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16
46 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16
47 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16
48 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16
LS Contribution 386.58 15.07 5.83 5.83
Total: -1.00 -31.36 386.58 -11.48 -42.84
By element:
Atomic # 1 Polarization: 18.24 SS G_CDS: -8.43 Total: 9.81 kcal
Atomic # 6 Polarization: 2.67 SS G_CDS: -4.51 Total: -1.84 kcal
Atomic # 7 Polarization: -61.12 SS G_CDS: 0.57 Total: -60.54 kcal
Atomic # 8 Polarization: -12.15 SS G_CDS: 0.09 Total: -12.06 kcal
Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal
Total LS contribution 5.83 Total: 5.83 kcal
Total: -31.36 -11.48 -42.84 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001752824843.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 107.103 kcal
(2) G-P(sol) polarization free energy of solvation -31.358 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.745 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.485 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.843 kcal
(6) G-S(sol) free energy of system = (1) + (5) 64.260 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds