Wall clock time and date at job start Sat Apr 11 2020 06:40:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31621 * 1
3 3 Si 1.86801 * 119.99839 * 2 1
4 4 H 1.48504 * 109.47148 * 270.00374 * 3 2 1
5 5 H 1.48502 * 109.47060 * 29.99940 * 3 2 1
6 6 H 1.48491 * 109.47059 * 150.00268 * 3 2 1
7 7 C 1.38809 * 120.00126 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99855 * 166.36557 * 7 2 1
9 9 N 1.36933 * 120.00013 * 346.36332 * 7 2 1
10 10 C 1.46962 * 120.65535 * 328.81943 * 9 7 2
11 11 C 1.53197 * 108.88873 * 233.53191 * 10 9 7
12 12 C 1.53042 * 109.30912 * 305.43975 * 11 10 9
13 13 C 1.53046 * 109.53954 * 61.36512 * 12 11 10
14 14 C 1.46932 * 120.63136 * 148.99370 * 9 7 2
15 15 H 1.09004 * 109.58564 * 246.32661 * 14 9 7
16 16 C 1.53001 * 109.58559 * 6.60947 * 14 9 7
17 17 N 1.46493 * 109.46943 * 299.40630 * 16 14 9
18 18 C 1.34774 * 119.99871 * 179.97438 * 17 16 14
19 19 O 1.21287 * 120.00300 * 359.72462 * 18 17 16
20 20 C 1.50705 * 120.00391 * 180.02562 * 18 17 16
21 21 C 1.50699 * 109.47466 * 179.72887 * 20 18 17
22 22 N 1.30244 * 126.10364 * 269.68844 * 21 20 18
23 23 N 1.39877 * 110.08425 * 179.84138 * 22 21 20
24 24 H 0.96997 * 125.45617 * 180.18199 * 23 22 21
25 25 C 1.37041 * 109.07306 * 0.43299 * 23 22 21
26 26 C 1.39283 * 133.84344 * 179.75006 * 25 23 22
27 27 C 1.36593 * 119.84821 * 179.97438 * 26 25 23
28 28 C 1.38968 * 120.81648 * 0.02807 * 27 26 25
29 29 C 1.36460 * 120.62548 * 359.96822 * 28 27 26
30 30 C 1.39943 * 119.63806 * 0.02562 * 29 28 27
31 31 H 0.97000 * 120.00508 * 359.97438 * 1 2 3
32 32 H 1.08998 * 109.46832 * 113.74640 * 10 9 7
33 33 H 1.09002 * 109.71034 * 353.45723 * 10 9 7
34 34 H 1.08999 * 109.49882 * 185.49150 * 11 10 9
35 35 H 1.08992 * 109.49563 * 65.38959 * 11 10 9
36 36 H 1.08995 * 109.46123 * 301.34544 * 12 11 10
37 37 H 1.09001 * 109.44521 * 181.37833 * 12 11 10
38 38 H 1.08998 * 109.49655 * 178.67473 * 13 12 11
39 39 H 1.09004 * 109.49363 * 58.58571 * 13 12 11
40 40 H 1.08992 * 109.47048 * 179.40358 * 16 14 9
41 41 H 1.09000 * 109.46778 * 59.40634 * 16 14 9
42 42 H 0.97002 * 120.00773 * 359.97438 * 17 16 14
43 43 H 1.09006 * 109.46598 * 299.72951 * 20 18 17
44 44 H 1.09003 * 109.47030 * 59.72029 * 20 18 17
45 45 H 1.07995 * 120.08159 * 0.02562 * 26 25 23
46 46 H 1.08000 * 119.58940 * 180.02562 * 27 26 25
47 47 H 1.08005 * 119.68545 * 179.97438 * 28 27 26
48 48 H 1.07999 * 120.18172 * 180.02562 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 2.4976 2.0465 -1.4001
5 1 1.4476 2.6527 0.7000
6 1 3.5477 1.4402 0.6999
7 6 2.0103 -1.2021 -0.0005
8 1 3.0674 -1.2151 -0.2210
9 7 1.3546 -2.3714 0.2785
10 6 0.2059 -2.3860 1.1951
11 6 0.4568 -3.4299 2.2880
12 6 0.7587 -4.7816 1.6369
13 6 2.0215 -4.6664 0.7800
14 6 1.7884 -3.6366 -0.3298
15 1 1.0164 -3.9992 -1.0086
16 6 3.0890 -3.4138 -1.1043
17 7 2.8631 -2.4292 -2.1652
18 6 3.8753 -2.0731 -2.9807
19 8 4.9745 -2.5640 -2.8331
20 6 3.6431 -1.0597 -4.0717
21 6 4.9259 -0.8350 -4.8300
22 7 5.8337 0.0575 -4.5550
23 7 6.8865 -0.0298 -5.4718
24 1 7.6800 0.5279 -5.4721
25 6 6.6143 -1.0260 -6.3727
26 6 7.2896 -1.5384 -7.4778
27 6 6.7415 -2.5643 -8.1939
28 6 5.5136 -3.1069 -7.8347
29 6 4.8294 -2.6252 -6.7568
30 6 5.3701 -1.5745 -6.0070
31 1 -0.4851 0.8400 0.0004
32 1 -0.6968 -2.6456 0.6421
33 1 0.0859 -1.4027 1.6498
34 1 -0.4293 -3.5187 2.9165
35 1 1.3063 -3.1217 2.8973
36 1 -0.0810 -5.0775 1.0081
37 1 0.9134 -5.5316 2.4127
38 1 2.2492 -5.6352 0.3355
39 1 2.8563 -4.3466 1.4037
40 1 3.4147 -4.3556 -1.5459
41 1 3.8579 -3.0460 -0.4249
42 1 1.9850 -2.0335 -2.2808
43 1 2.8777 -1.4295 -4.7541
44 1 3.3125 -0.1196 -3.6301
45 1 8.2448 -1.1260 -7.7675
46 1 7.2690 -2.9587 -9.0499
47 1 5.0969 -3.9175 -8.4142
48 1 3.8758 -3.0525 -6.4838
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001752824843.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:40:04
Heat of formation + Delta-G solvation = 45.349592 kcal
Electronic energy + Delta-G solvation = -30028.739701 eV
Core-core repulsion = 26084.201046 eV
Total energy + Delta-G solvation = -3944.538655 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-42.30142 -40.67333 -39.26309 -38.07183 -35.67198 -34.87371 -34.39361 -32.47325
-31.69136 -31.23754 -30.70166 -29.43321 -27.51727 -26.21953 -23.96510 -23.79600
-23.13174 -22.49687 -21.83147 -20.81266 -20.48306 -18.86692 -18.54773 -17.87077
-17.68358 -17.30392 -16.79202 -16.20970 -16.08064 -15.83394 -15.69717 -15.50439
-15.15371 -14.85839 -14.79968 -14.60303 -14.45394 -14.10108 -14.04411 -13.61475
-13.55761 -13.10989 -12.82791 -12.80982 -12.80433 -12.72858 -12.54410 -12.29911
-12.03462 -11.97660 -11.77087 -11.72800 -11.51296 -11.30206 -11.11898 -11.06152
-10.70810 -10.49266 -9.80739 -9.64798 -8.94092 -8.52356 -7.81217 -5.27058
-0.00402 0.58771 1.34162 1.40619 1.46821 1.53001 1.71921 1.73570
2.47724 2.53338 2.90162 3.34425 3.37760 3.56054 3.61590 3.76349
3.99868 4.04081 4.17110 4.24484 4.29601 4.33262 4.44635 4.45994
4.48804 4.50669 4.58521 4.65965 4.68371 4.80453 4.90068 4.96992
5.02505 5.09006 5.17294 5.24159 5.30539 5.37853 5.41094 5.49300
5.53140 5.62427 5.66458 5.66804 5.78503 5.87164 5.98078 6.38979
6.47117 6.58419 6.74960 7.22622 7.37854 7.91758 8.44827 9.23201
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.013925 B = 0.003172 C = 0.002741
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2010.308344 B = 8824.384764 C =10210.987291
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.921 5.921
2 C -0.026 4.026
3 Si 0.930 3.070
4 H -0.281 1.281
5 H -0.295 1.295
6 H -0.291 1.291
7 C -0.235 4.235
8 H 0.058 0.942
9 N -0.601 5.601
10 C 0.178 3.822
11 C -0.136 4.136
12 C -0.102 4.102
13 C -0.123 4.123
14 C 0.161 3.839
15 H 0.039 0.961
16 C 0.141 3.859
17 N -0.691 5.691
18 C 0.516 3.484
19 O -0.590 6.590
20 C -0.063 4.063
21 C 0.116 3.884
22 N -0.281 5.281
23 N -0.508 5.508
24 H 0.448 0.552
25 C 0.110 3.890
26 C -0.150 4.150
27 C -0.066 4.066
28 C -0.159 4.159
29 C -0.053 4.053
30 C -0.192 4.192
31 H 0.248 0.752
32 H 0.004 0.996
33 H 0.048 0.952
34 H 0.064 0.936
35 H 0.042 0.958
36 H 0.060 0.940
37 H 0.072 0.928
38 H 0.083 0.917
39 H 0.049 0.951
40 H 0.074 0.926
41 H 0.038 0.962
42 H 0.414 0.586
43 H 0.149 0.851
44 H 0.111 0.889
45 H 0.150 0.850
46 H 0.165 0.835
47 H 0.156 0.844
48 H 0.138 0.862
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.045 -8.360 -14.292 17.994
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.567 5.567
2 C -0.223 4.223
3 Si 0.760 3.240
4 H -0.207 1.207
5 H -0.221 1.221
6 H -0.217 1.217
7 C -0.365 4.365
8 H 0.076 0.924
9 N -0.325 5.325
10 C 0.052 3.948
11 C -0.176 4.176
12 C -0.140 4.140
13 C -0.163 4.163
14 C 0.055 3.945
15 H 0.056 0.944
16 C 0.017 3.983
17 N -0.341 5.341
18 C 0.302 3.698
19 O -0.472 6.472
20 C -0.104 4.104
21 C -0.062 4.062
22 N -0.096 5.096
23 N -0.224 5.224
24 H 0.295 0.705
25 C -0.005 4.005
26 C -0.172 4.172
27 C -0.086 4.086
28 C -0.178 4.178
29 C -0.074 4.074
30 C -0.200 4.200
31 H 0.058 0.942
32 H 0.022 0.978
33 H 0.066 0.934
34 H 0.083 0.917
35 H 0.061 0.939
36 H 0.078 0.922
37 H 0.091 0.909
38 H 0.101 0.899
39 H 0.068 0.932
40 H 0.092 0.908
41 H 0.056 0.944
42 H 0.252 0.748
43 H 0.167 0.833
44 H 0.129 0.871
45 H 0.168 0.832
46 H 0.183 0.817
47 H 0.173 0.827
48 H 0.155 0.845
Dipole moment (debyes) X Y Z Total
from point charges 8.052 -7.587 -13.383 17.364
hybrid contribution 0.218 1.547 0.118 1.567
sum 8.270 -6.040 -13.265 16.758
Atomic orbital electron populations
1.70088 1.05770 1.25288 1.55574 1.25376 0.95504 0.99551 1.01832
0.85870 0.77877 0.82390 0.77846 1.20736 1.22099 1.21722 1.19154
0.91387 0.84895 1.41091 0.92414 1.44243 1.35280 1.02769 1.50257
1.20581 0.87942 0.96853 0.89377 1.22061 1.00350 0.96765 0.98376
1.21343 0.97374 0.96386 0.98859 1.21908 0.98134 0.98748 0.97502
1.20882 0.93066 0.87439 0.93066 0.94374 1.21225 0.97408 0.91144
0.88542 1.45941 1.13779 1.43205 1.31149 1.20482 0.84060 0.82382
0.82887 1.90650 1.25406 1.57477 1.73619 1.20106 0.93605 1.00470
0.96241 1.22939 0.95539 0.93413 0.94338 1.76460 0.97558 1.22913
1.12651 1.45817 1.20024 1.32685 1.23908 0.70520 1.19297 0.95818
0.91616 0.93816 1.20214 1.01899 1.00555 0.94521 1.21197 0.94964
0.93545 0.98889 1.21076 0.96240 1.02443 0.98030 1.20661 1.00160
0.92782 0.93755 1.20012 0.97488 1.03216 0.99248 0.94216 0.97776
0.93354 0.91730 0.93889 0.92150 0.90891 0.89897 0.93193 0.90821
0.94355 0.74829 0.83327 0.87112 0.83206 0.81742 0.82675 0.84456
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -50.19 11.22 21.65 0.24 -49.95 16
2 C -0.03 -1.35 4.98 84.86 0.42 -0.93 16
3 Si 0.93 44.34 29.58 68.60 2.03 46.37 16
4 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16
5 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16
6 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16
7 C -0.23 -11.74 7.00 84.03 0.59 -11.15 16
8 H 0.06 3.03 5.85 -2.91 -0.02 3.01 16
9 N -0.60 -27.01 2.98 -675.12 -2.01 -29.03 16
10 C 0.18 7.94 5.26 86.36 0.45 8.39 16
11 C -0.14 -4.82 6.08 30.67 0.19 -4.63 16
12 C -0.10 -2.99 5.88 30.62 0.18 -2.81 16
13 C -0.12 -3.79 5.37 30.67 0.16 -3.63 16
14 C 0.16 5.91 3.00 44.97 0.13 6.04 16
15 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16
16 C 0.14 5.20 4.43 86.38 0.38 5.58 16
17 N -0.69 -25.59 3.86 -463.07 -1.79 -27.37 16
18 C 0.52 19.47 7.82 87.66 0.69 20.15 16
19 O -0.59 -26.39 16.03 -3.05 -0.05 -26.44 16
20 C -0.06 -1.98 6.30 29.10 0.18 -1.80 16
21 C 0.12 3.94 5.92 44.79 0.27 4.21 16
22 N -0.28 -10.13 12.55 -43.70 -0.55 -10.68 16
23 N -0.51 -14.50 7.37 -51.54 -0.38 -14.88 16
24 H 0.45 9.59 8.96 -213.47 -1.91 7.67 16
25 C 0.11 2.97 7.34 39.21 0.29 3.26 16
26 C -0.15 -2.85 10.03 22.14 0.22 -2.63 16
27 C -0.07 -1.01 9.96 22.06 0.22 -0.79 16
28 C -0.16 -2.75 9.97 22.03 0.22 -2.53 16
29 C -0.05 -1.24 10.07 22.27 0.22 -1.01 16
30 C -0.19 -5.70 6.33 -20.25 -0.13 -5.82 16
31 H 0.25 13.39 8.31 -92.71 -0.77 12.62 16
32 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16
33 H 0.05 2.50 6.20 -2.39 -0.01 2.48 16
34 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16
35 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16
36 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16
37 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16
38 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16
39 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16
40 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16
41 H 0.04 1.62 7.40 -2.39 -0.02 1.60 16
42 H 0.41 15.66 7.43 -92.71 -0.69 14.97 16
43 H 0.15 3.46 8.14 -2.38 -0.02 3.44 16
44 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16
45 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16
46 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16
47 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16
48 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16
Total: -1.00 -70.48 386.58 0.58 -69.90
By element:
Atomic # 1 Polarization: 33.79 SS G_CDS: -1.61 Total: 32.18 kcal
Atomic # 6 Polarization: 5.21 SS G_CDS: 4.69 Total: 9.90 kcal
Atomic # 7 Polarization: -127.43 SS G_CDS: -4.48 Total: -131.91 kcal
Atomic # 8 Polarization: -26.39 SS G_CDS: -0.05 Total: -26.44 kcal
Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal
Total: -70.48 0.58 -69.90 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001752824843.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 115.248 kcal
(2) G-P(sol) polarization free energy of solvation -70.480 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.768 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.581 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.899 kcal
(6) G-S(sol) free energy of system = (1) + (5) 45.350 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds