Wall clock time and date at job start Sat Apr 11 2020 06:42:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31625 * 1
3 3 Si 1.86801 * 120.00056 * 2 1
4 4 H 1.48500 * 109.47167 * 274.99965 * 3 2 1
5 5 H 1.48493 * 109.47090 * 35.00207 * 3 2 1
6 6 H 1.48501 * 109.46743 * 155.00100 * 3 2 1
7 7 C 1.38813 * 119.99724 * 180.02562 * 2 1 3
8 8 H 1.07997 * 119.99769 * 185.02194 * 7 2 1
9 9 N 1.36939 * 119.99744 * 5.02047 * 7 2 1
10 10 C 1.48375 * 126.56418 * 354.90590 * 9 7 2
11 11 C 1.55471 * 106.97712 * 185.55469 * 10 9 7
12 12 C 1.53434 * 101.70485 * 22.58346 * 11 10 9
13 13 H 1.09002 * 111.14284 * 77.99856 * 12 11 10
14 14 C 1.45023 * 126.55762 * 174.95348 * 9 7 2
15 15 H 1.09005 * 108.70959 * 264.08146 * 14 9 7
16 16 C 1.51089 * 119.18619 * 29.36053 * 14 9 7
17 17 C 1.54155 * 107.24363 * 184.30877 * 16 14 9
18 18 C 1.52716 * 111.10690 * 302.25146 * 17 16 14
19 19 N 1.45724 * 116.38344 * 207.28854 * 12 11 10
20 20 C 1.34775 * 122.22304 * 350.13664 * 19 12 11
21 21 O 1.21280 * 120.00307 * 354.65308 * 20 19 12
22 22 C 1.50700 * 119.99657 * 174.65363 * 20 19 12
23 23 C 1.52996 * 109.47354 * 275.05548 * 22 20 19
24 24 C 1.53002 * 109.47406 * 179.97438 * 23 22 20
25 25 C 1.52996 * 109.47097 * 59.99917 * 24 23 22
26 26 F 1.39895 * 109.47073 * 179.97438 * 25 24 23
27 27 F 1.39902 * 109.47230 * 60.00063 * 25 24 23
28 28 C 1.53005 * 109.47215 * 300.00356 * 25 24 23
29 29 C 1.52996 * 109.47124 * 155.05480 * 22 20 19
30 30 H 0.97000 * 119.99535 * 359.97438 * 1 2 3
31 31 H 1.08996 * 109.95849 * 66.17506 * 10 9 7
32 32 H 1.08998 * 109.96289 * 304.93570 * 10 9 7
33 33 H 1.09003 * 110.99141 * 140.69609 * 11 10 9
34 34 H 1.08993 * 110.98948 * 264.47004 * 11 10 9
35 35 H 1.09003 * 109.88007 * 303.34379 * 16 14 9
36 36 H 1.09001 * 109.88270 * 64.42518 * 16 14 9
37 37 H 1.08995 * 109.02622 * 182.01406 * 17 16 14
38 38 H 1.09005 * 109.48012 * 62.78100 * 17 16 14
39 39 H 1.09002 * 109.16202 * 288.43820 * 18 17 16
40 40 H 1.08999 * 109.16459 * 169.25108 * 18 17 16
41 41 H 1.09005 * 109.46986 * 35.05806 * 22 20 19
42 42 H 1.08999 * 109.47162 * 300.00490 * 23 22 20
43 43 H 1.09004 * 109.47052 * 59.99715 * 23 22 20
44 44 H 1.08997 * 109.46643 * 300.00183 * 24 23 22
45 45 H 1.08995 * 109.46850 * 180.02562 * 24 23 22
46 46 H 1.09005 * 109.46653 * 299.99992 * 28 25 24
47 47 H 1.08997 * 109.46835 * 180.02562 * 28 25 24
48 48 H 1.09004 * 109.47709 * 299.99916 * 29 22 20
49 49 H 1.08997 * 109.47538 * 60.00148 * 29 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 2.3921 2.1074 -1.3947
5 1 1.5046 2.6198 0.8031
6 1 3.5967 1.4119 0.5917
7 6 2.0103 -1.2022 -0.0005
8 1 3.0871 -1.2040 0.0813
9 7 1.3294 -2.3857 -0.1049
10 6 -0.1441 -2.5596 -0.1184
11 6 -0.4208 -4.0894 -0.1095
12 6 0.8830 -4.6381 0.4849
13 1 0.9076 -4.5070 1.5667
14 6 1.9106 -3.7092 -0.2222
15 1 1.9527 -3.9803 -1.2772
16 6 3.2595 -3.9795 0.4024
17 6 3.6590 -5.4190 0.0221
18 6 2.6092 -6.4235 0.4924
19 7 1.2499 -5.9947 0.0994
20 6 0.4064 -6.8043 -0.5710
21 8 -0.7321 -6.4475 -0.7887
22 6 0.8779 -8.1531 -1.0501
23 6 1.5741 -7.9987 -2.4037
24 6 2.0534 -9.3680 -2.8899
25 6 0.8534 -10.3055 -3.0376
26 9 1.2916 -11.5573 -3.4826
27 9 -0.0457 -9.7695 -3.9658
28 6 0.1571 -10.4599 -1.6839
29 6 -0.3225 -9.0901 -1.1979
30 1 -0.4849 0.8401 0.0004
31 1 -0.5634 -2.1109 -1.0189
32 1 -0.5815 -2.0972 0.7664
33 1 -1.2717 -4.3287 0.5284
34 1 -0.5765 -4.4639 -1.1212
35 1 3.9970 -3.2798 0.0092
36 1 3.1931 -3.8796 1.4858
37 1 4.6145 -5.6577 0.4889
38 1 3.7632 -5.4934 -1.0604
39 1 2.6574 -6.5096 1.5779
40 1 2.8200 -7.3961 0.0476
41 1 1.5782 -8.5711 -0.3269
42 1 0.8738 -7.5807 -3.1269
43 1 2.4293 -7.3311 -2.2984
44 1 2.7538 -9.7855 -2.1666
45 1 2.5497 -9.2578 -3.8540
46 1 0.8576 -10.8775 -0.9606
47 1 -0.6975 -11.1281 -1.7890
48 1 -0.8185 -9.2002 -0.2335
49 1 -1.0228 -8.6722 -1.9210
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001049746443.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:42:10
Heat of formation + Delta-G solvation = -115.368417 kcal
Electronic energy + Delta-G solvation = -32169.858386 eV
Core-core repulsion = 27767.661289 eV
Total energy + Delta-G solvation = -4402.197097 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 342.186 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-49.19162 -47.17395 -40.64168 -38.50523 -36.85122 -35.44933 -32.63919 -32.27690
-31.48385 -30.56985 -28.80362 -28.23849 -25.00196 -24.48281 -23.51470 -23.16965
-21.56441 -21.10906 -20.20275 -19.69361 -18.69515 -17.64342 -17.17326 -16.84931
-16.51671 -16.27338 -15.72566 -15.26449 -14.81961 -14.52163 -14.37718 -14.20012
-14.03850 -13.87131 -13.70767 -13.49636 -13.36225 -13.27466 -12.91596 -12.72673
-12.60239 -12.42502 -12.29142 -12.00181 -11.89943 -11.67034 -11.61596 -11.54303
-11.21245 -10.94009 -10.85663 -10.69301 -10.53356 -10.44953 -10.40561 -10.09882
-10.01307 -9.85671 -9.61310 -9.02611 -8.58932 -8.24433 -6.82873 -5.71414
-3.05251 2.74378 3.09045 3.39787 3.44553 3.46981 3.47460 3.76702
3.98635 4.05198 4.48420 4.51311 4.55172 4.60543 4.73703 4.74144
4.90348 4.99024 5.05611 5.20511 5.25027 5.27812 5.34945 5.42365
5.42903 5.43734 5.53155 5.58702 5.67135 5.68578 5.74425 5.84148
5.86335 5.98061 6.01580 6.07345 6.23372 6.26418 6.36437 6.54055
6.69400 6.77200 6.87214 7.15938 7.58322 7.62874 7.70428 7.83341
8.24328 8.39530 9.18626 9.82726 10.51141 11.41072
Molecular weight = 342.19amu
Principal moments of inertia in cm(-1)
A = 0.022368 B = 0.002798 C = 0.002710
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1251.512871 B =10006.274511 C =10328.291959
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.918 5.918
2 C -0.006 4.006
3 Si 0.909 3.091
4 H -0.289 1.289
5 H -0.291 1.291
6 H -0.281 1.281
7 C -0.228 4.228
8 H 0.079 0.921
9 N -0.593 5.593
10 C 0.173 3.827
11 C -0.127 4.127
12 C 0.115 3.885
13 H 0.079 0.921
14 C 0.160 3.840
15 H 0.018 0.982
16 C -0.117 4.117
17 C -0.129 4.129
18 C 0.108 3.892
19 N -0.598 5.598
20 C 0.521 3.479
21 O -0.528 6.528
22 C -0.112 4.112
23 C -0.109 4.109
24 C -0.154 4.154
25 C 0.286 3.714
26 F -0.205 7.205
27 F -0.197 7.197
28 C -0.156 4.156
29 C -0.102 4.102
30 H 0.253 0.747
31 H 0.041 0.959
32 H 0.052 0.948
33 H 0.061 0.939
34 H 0.076 0.924
35 H 0.066 0.934
36 H 0.064 0.936
37 H 0.072 0.928
38 H 0.064 0.936
39 H 0.066 0.934
40 H 0.079 0.921
41 H 0.094 0.906
42 H 0.082 0.918
43 H 0.084 0.916
44 H 0.095 0.905
45 H 0.091 0.909
46 H 0.094 0.906
47 H 0.090 0.910
48 H 0.081 0.919
49 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.820 -22.523 -0.899 23.281
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.565 5.565
2 C -0.203 4.203
3 Si 0.740 3.260
4 H -0.217 1.217
5 H -0.218 1.218
6 H -0.207 1.207
7 C -0.356 4.356
8 H 0.096 0.904
9 N -0.317 5.317
10 C 0.048 3.952
11 C -0.165 4.165
12 C 0.011 3.989
13 H 0.097 0.903
14 C 0.050 3.950
15 H 0.035 0.965
16 C -0.155 4.155
17 C -0.168 4.168
18 C -0.015 4.015
19 N -0.331 5.331
20 C 0.308 3.692
21 O -0.404 6.404
22 C -0.133 4.133
23 C -0.147 4.147
24 C -0.192 4.192
25 C 0.250 3.750
26 F -0.186 7.186
27 F -0.178 7.178
28 C -0.194 4.194
29 C -0.140 4.140
30 H 0.063 0.937
31 H 0.060 0.940
32 H 0.071 0.929
33 H 0.080 0.920
34 H 0.095 0.905
35 H 0.085 0.915
36 H 0.083 0.917
37 H 0.091 0.909
38 H 0.082 0.918
39 H 0.085 0.915
40 H 0.097 0.903
41 H 0.112 0.888
42 H 0.101 0.899
43 H 0.103 0.897
44 H 0.114 0.886
45 H 0.110 0.890
46 H 0.112 0.888
47 H 0.108 0.892
48 H 0.100 0.900
49 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges 5.121 -22.102 -1.048 22.712
hybrid contribution 0.574 0.819 -0.087 1.003
sum 5.695 -21.283 -1.135 22.061
Atomic orbital electron populations
1.69961 1.04911 1.25081 1.56542 1.24818 0.95661 0.97638 1.02174
0.86141 0.78614 0.83752 0.77493 1.21654 1.21774 1.20665 1.18986
0.90650 0.82287 1.43694 0.90359 1.44084 1.01755 0.99895 1.85988
1.21730 0.83685 0.88590 1.01184 1.22902 0.94688 0.97502 1.01434
1.22405 0.98665 0.79294 0.98582 0.90320 1.20752 0.91397 0.86920
0.95930 0.96517 1.21501 0.98631 0.94443 1.00963 1.21961 0.97624
0.95638 1.01581 1.21765 0.81807 0.97857 1.00072 1.48019 1.14290
1.14735 1.56070 1.20265 0.85281 0.85712 0.77935 1.90719 1.18547
1.74645 1.56474 1.21446 0.99002 0.94352 0.98512 1.21460 1.01529
0.95949 0.95785 1.22505 0.96268 0.95709 1.04745 1.21149 0.88384
0.78650 0.86810 1.93001 1.90322 1.44200 1.91071 1.93018 1.69767
1.86187 1.68788 1.22545 1.02351 1.00202 0.94315 1.21370 0.97149
0.91883 1.03570 0.93712 0.94037 0.92945 0.92023 0.90500 0.91534
0.91732 0.90937 0.91761 0.91535 0.90285 0.88771 0.89887 0.89695
0.88597 0.89043 0.88776 0.89165 0.90044 0.89417
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -27.10 10.49 55.49 0.58 -26.52 16
2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16
3 Si 0.91 21.97 29.56 -169.99 -5.02 16.95 16
4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16
5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16
6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16
7 C -0.23 -6.22 9.96 -15.06 -0.15 -6.37 16
8 H 0.08 2.04 7.29 -52.49 -0.38 1.66 16
9 N -0.59 -14.96 3.35 -163.26 -0.55 -15.51 16
10 C 0.17 4.32 5.46 -1.70 -0.01 4.31 16
11 C -0.13 -2.65 4.94 -25.19 -0.12 -2.77 16
12 C 0.11 2.10 3.30 -66.78 -0.22 1.88 16
13 H 0.08 1.47 8.12 -51.93 -0.42 1.05 16
14 C 0.16 3.21 2.60 -68.34 -0.18 3.03 16
15 H 0.02 0.38 8.03 -51.93 -0.42 -0.04 16
16 C -0.12 -1.89 5.43 -27.09 -0.15 -2.04 16
17 C -0.13 -1.46 5.95 -26.27 -0.16 -1.62 16
18 C 0.11 1.11 6.24 -3.45 -0.02 1.09 16
19 N -0.60 -8.56 2.91 -163.97 -0.48 -9.03 16
20 C 0.52 7.44 6.74 -10.99 -0.07 7.36 16
21 O -0.53 -9.58 13.09 5.56 0.07 -9.51 16
22 C -0.11 -1.08 1.73 -91.78 -0.16 -1.23 16
23 C -0.11 -0.99 5.00 -26.73 -0.13 -1.12 16
24 C -0.15 -1.12 5.45 -26.73 -0.15 -1.27 16
25 C 0.29 2.58 2.10 -26.73 -0.06 2.53 16
26 F -0.20 -2.06 17.06 2.25 0.04 -2.02 16
27 F -0.20 -2.29 16.03 2.25 0.04 -2.25 16
28 C -0.16 -1.16 5.46 -26.70 -0.15 -1.31 16
29 C -0.10 -0.96 4.62 -26.71 -0.12 -1.08 16
30 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16
31 H 0.04 1.15 7.69 -51.93 -0.40 0.75 16
32 H 0.05 1.43 7.35 -51.93 -0.38 1.05 16
33 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16
34 H 0.08 1.68 6.38 -51.93 -0.33 1.35 16
35 H 0.07 1.14 7.71 -51.93 -0.40 0.74 16
36 H 0.06 1.06 8.09 -51.93 -0.42 0.64 16
37 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16
38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16
39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16
40 H 0.08 0.57 5.56 -51.93 -0.29 0.29 16
41 H 0.09 0.66 6.37 -51.93 -0.33 0.33 16
42 H 0.08 0.93 7.80 -51.93 -0.41 0.53 16
43 H 0.08 0.73 8.07 -51.93 -0.42 0.31 16
44 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16
45 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16
46 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16
47 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16
48 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16
49 H 0.09 1.03 7.53 -51.93 -0.39 0.64 16
LS Contribution 371.84 15.07 5.60 5.60
Total: -1.00 -32.41 371.84 -9.58 -41.99
By element:
Atomic # 1 Polarization: 7.12 SS G_CDS: -7.93 Total: -0.81 kcal
Atomic # 6 Polarization: 3.06 SS G_CDS: -1.94 Total: 1.12 kcal
Atomic # 7 Polarization: -50.62 SS G_CDS: -0.44 Total: -51.06 kcal
Atomic # 8 Polarization: -9.58 SS G_CDS: 0.07 Total: -9.51 kcal
Atomic # 9 Polarization: -4.35 SS G_CDS: 0.07 Total: -4.28 kcal
Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal
Total LS contribution 5.60 Total: 5.60 kcal
Total: -32.41 -9.58 -41.99 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049746443.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -73.376 kcal
(2) G-P(sol) polarization free energy of solvation -32.409 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.784 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.584 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.992 kcal
(6) G-S(sol) free energy of system = (1) + (5) -115.368 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds