Wall clock time and date at job start Sat Apr 11 2020 06:42:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31625 * 1
3 3 Si 1.86801 * 120.00056 * 2 1
4 4 H 1.48500 * 109.47167 * 274.99965 * 3 2 1
5 5 H 1.48493 * 109.47090 * 35.00207 * 3 2 1
6 6 H 1.48501 * 109.46743 * 155.00100 * 3 2 1
7 7 C 1.38813 * 119.99724 * 180.02562 * 2 1 3
8 8 H 1.07997 * 119.99769 * 185.02194 * 7 2 1
9 9 N 1.36939 * 119.99744 * 5.02047 * 7 2 1
10 10 C 1.48375 * 126.56418 * 354.90590 * 9 7 2
11 11 C 1.55471 * 106.97712 * 185.55469 * 10 9 7
12 12 C 1.53434 * 101.70485 * 22.58346 * 11 10 9
13 13 H 1.09002 * 111.14284 * 77.99856 * 12 11 10
14 14 C 1.45023 * 126.55762 * 174.95348 * 9 7 2
15 15 H 1.09005 * 108.70959 * 264.08146 * 14 9 7
16 16 C 1.51089 * 119.18619 * 29.36053 * 14 9 7
17 17 C 1.54155 * 107.24363 * 184.30877 * 16 14 9
18 18 C 1.52716 * 111.10690 * 302.25146 * 17 16 14
19 19 N 1.45724 * 116.38344 * 207.28854 * 12 11 10
20 20 C 1.34775 * 122.22304 * 350.13664 * 19 12 11
21 21 O 1.21280 * 120.00307 * 354.65308 * 20 19 12
22 22 C 1.50700 * 119.99657 * 174.65363 * 20 19 12
23 23 C 1.52996 * 109.47354 * 275.05548 * 22 20 19
24 24 C 1.53002 * 109.47406 * 179.97438 * 23 22 20
25 25 C 1.52996 * 109.47097 * 59.99917 * 24 23 22
26 26 F 1.39895 * 109.47073 * 179.97438 * 25 24 23
27 27 F 1.39902 * 109.47230 * 60.00063 * 25 24 23
28 28 C 1.53005 * 109.47215 * 300.00356 * 25 24 23
29 29 C 1.52996 * 109.47124 * 155.05480 * 22 20 19
30 30 H 0.97000 * 119.99535 * 359.97438 * 1 2 3
31 31 H 1.08996 * 109.95849 * 66.17506 * 10 9 7
32 32 H 1.08998 * 109.96289 * 304.93570 * 10 9 7
33 33 H 1.09003 * 110.99141 * 140.69609 * 11 10 9
34 34 H 1.08993 * 110.98948 * 264.47004 * 11 10 9
35 35 H 1.09003 * 109.88007 * 303.34379 * 16 14 9
36 36 H 1.09001 * 109.88270 * 64.42518 * 16 14 9
37 37 H 1.08995 * 109.02622 * 182.01406 * 17 16 14
38 38 H 1.09005 * 109.48012 * 62.78100 * 17 16 14
39 39 H 1.09002 * 109.16202 * 288.43820 * 18 17 16
40 40 H 1.08999 * 109.16459 * 169.25108 * 18 17 16
41 41 H 1.09005 * 109.46986 * 35.05806 * 22 20 19
42 42 H 1.08999 * 109.47162 * 300.00490 * 23 22 20
43 43 H 1.09004 * 109.47052 * 59.99715 * 23 22 20
44 44 H 1.08997 * 109.46643 * 300.00183 * 24 23 22
45 45 H 1.08995 * 109.46850 * 180.02562 * 24 23 22
46 46 H 1.09005 * 109.46653 * 299.99992 * 28 25 24
47 47 H 1.08997 * 109.46835 * 180.02562 * 28 25 24
48 48 H 1.09004 * 109.47709 * 299.99916 * 29 22 20
49 49 H 1.08997 * 109.47538 * 60.00148 * 29 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 2.3921 2.1074 -1.3947
5 1 1.5046 2.6198 0.8031
6 1 3.5967 1.4119 0.5917
7 6 2.0103 -1.2022 -0.0005
8 1 3.0871 -1.2040 0.0813
9 7 1.3294 -2.3857 -0.1049
10 6 -0.1441 -2.5596 -0.1184
11 6 -0.4208 -4.0894 -0.1095
12 6 0.8830 -4.6381 0.4849
13 1 0.9076 -4.5070 1.5667
14 6 1.9106 -3.7092 -0.2222
15 1 1.9527 -3.9803 -1.2772
16 6 3.2595 -3.9795 0.4024
17 6 3.6590 -5.4190 0.0221
18 6 2.6092 -6.4235 0.4924
19 7 1.2499 -5.9947 0.0994
20 6 0.4064 -6.8043 -0.5710
21 8 -0.7321 -6.4475 -0.7887
22 6 0.8779 -8.1531 -1.0501
23 6 1.5741 -7.9987 -2.4037
24 6 2.0534 -9.3680 -2.8899
25 6 0.8534 -10.3055 -3.0376
26 9 1.2916 -11.5573 -3.4826
27 9 -0.0457 -9.7695 -3.9658
28 6 0.1571 -10.4599 -1.6839
29 6 -0.3225 -9.0901 -1.1979
30 1 -0.4849 0.8401 0.0004
31 1 -0.5634 -2.1109 -1.0189
32 1 -0.5815 -2.0972 0.7664
33 1 -1.2717 -4.3287 0.5284
34 1 -0.5765 -4.4639 -1.1212
35 1 3.9970 -3.2798 0.0092
36 1 3.1931 -3.8796 1.4858
37 1 4.6145 -5.6577 0.4889
38 1 3.7632 -5.4934 -1.0604
39 1 2.6574 -6.5096 1.5779
40 1 2.8200 -7.3961 0.0476
41 1 1.5782 -8.5711 -0.3269
42 1 0.8738 -7.5807 -3.1269
43 1 2.4293 -7.3311 -2.2984
44 1 2.7538 -9.7855 -2.1666
45 1 2.5497 -9.2578 -3.8540
46 1 0.8576 -10.8775 -0.9606
47 1 -0.6975 -11.1281 -1.7890
48 1 -0.8185 -9.2002 -0.2335
49 1 -1.0228 -8.6722 -1.9210
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001049746443.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:42:09
Heat of formation + Delta-G solvation = -134.513949 kcal
Electronic energy + Delta-G solvation = -32170.688598 eV
Core-core repulsion = 27767.661289 eV
Total energy + Delta-G solvation = -4403.027310 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 342.186 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-49.92238 -47.92704 -41.84394 -39.76090 -37.83641 -36.91018 -34.27430 -33.81382
-32.13662 -31.62565 -30.44956 -29.64320 -26.51901 -26.09118 -24.19904 -24.14277
-22.82874 -22.43451 -21.48284 -21.06639 -19.78875 -18.65054 -18.33488 -17.85526
-17.46572 -17.19846 -17.17590 -16.69470 -16.35026 -15.81040 -15.56945 -15.29333
-15.23239 -14.92434 -14.81207 -14.44517 -14.32086 -14.28588 -14.07191 -13.98586
-13.76275 -13.38529 -13.35604 -13.21083 -13.14876 -12.88744 -12.74480 -12.70574
-12.55876 -12.22912 -12.13113 -12.08555 -11.95617 -11.77560 -11.72391 -11.65912
-11.44510 -11.39523 -11.10527 -10.76130 -10.28826 -9.50810 -8.90900 -7.85941
-5.22232 1.44809 1.47366 1.56045 1.65637 1.98934 2.49810 2.84842
3.16197 3.21378 3.33584 3.42234 3.45196 3.71520 3.79742 3.88245
3.97246 4.00006 4.08873 4.10044 4.12938 4.23275 4.33764 4.35853
4.38296 4.56650 4.59809 4.61381 4.67898 4.72043 4.79930 4.84977
4.90043 4.93651 4.96837 4.99969 5.05466 5.12345 5.16499 5.21254
5.31456 5.32161 5.47591 5.48865 5.58674 5.63256 5.72069 6.17227
6.58611 7.04194 7.27384 7.74976 8.45440 9.26552
Molecular weight = 342.19amu
Principal moments of inertia in cm(-1)
A = 0.022368 B = 0.002798 C = 0.002710
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1251.512871 B =10006.274511 C =10328.291959
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.955 5.955
2 C -0.071 4.071
3 Si 0.978 3.022
4 H -0.291 1.291
5 H -0.297 1.297
6 H -0.261 1.261
7 C -0.232 4.232
8 H 0.091 0.909
9 N -0.613 5.613
10 C 0.183 3.817
11 C -0.109 4.109
12 C 0.131 3.869
13 H 0.078 0.922
14 C 0.153 3.847
15 H 0.000 1.000
16 C -0.114 4.114
17 C -0.120 4.120
18 C 0.100 3.900
19 N -0.598 5.598
20 C 0.513 3.487
21 O -0.577 6.577
22 C -0.099 4.099
23 C -0.107 4.107
24 C -0.146 4.146
25 C 0.273 3.727
26 F -0.210 7.210
27 F -0.220 7.220
28 C -0.147 4.147
29 C -0.100 4.100
30 H 0.246 0.754
31 H -0.001 1.001
32 H 0.020 0.980
33 H 0.061 0.939
34 H 0.064 0.936
35 H 0.053 0.947
36 H 0.063 0.937
37 H 0.112 0.888
38 H 0.067 0.933
39 H 0.086 0.914
40 H 0.125 0.875
41 H 0.140 0.860
42 H 0.048 0.952
43 H 0.097 0.903
44 H 0.134 0.866
45 H 0.094 0.906
46 H 0.130 0.870
47 H 0.091 0.909
48 H 0.085 0.915
49 H 0.052 0.948
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.627 -25.704 0.314 27.449
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.604 5.604
2 C -0.263 4.263
3 Si 0.807 3.193
4 H -0.218 1.218
5 H -0.224 1.224
6 H -0.185 1.185
7 C -0.361 4.361
8 H 0.108 0.892
9 N -0.337 5.337
10 C 0.058 3.942
11 C -0.148 4.148
12 C 0.026 3.974
13 H 0.096 0.904
14 C 0.045 3.955
15 H 0.018 0.982
16 C -0.152 4.152
17 C -0.158 4.158
18 C -0.020 4.020
19 N -0.331 5.331
20 C 0.303 3.697
21 O -0.457 6.457
22 C -0.120 4.120
23 C -0.145 4.145
24 C -0.183 4.183
25 C 0.237 3.763
26 F -0.191 7.191
27 F -0.202 7.202
28 C -0.185 4.185
29 C -0.138 4.138
30 H 0.055 0.945
31 H 0.017 0.983
32 H 0.039 0.961
33 H 0.080 0.920
34 H 0.082 0.918
35 H 0.072 0.928
36 H 0.082 0.918
37 H 0.130 0.870
38 H 0.085 0.915
39 H 0.104 0.896
40 H 0.143 0.857
41 H 0.158 0.842
42 H 0.067 0.933
43 H 0.116 0.884
44 H 0.152 0.848
45 H 0.112 0.888
46 H 0.148 0.852
47 H 0.109 0.891
48 H 0.103 0.897
49 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges 8.992 -25.341 0.167 26.889
hybrid contribution -0.656 1.789 -0.517 1.974
sum 8.336 -23.552 -0.350 24.986
Atomic orbital electron populations
1.70196 1.06602 1.25255 1.58359 1.25725 0.96518 1.01272 1.02827
0.85054 0.78054 0.79135 0.77090 1.21817 1.22385 1.18507 1.19432
0.91376 0.83203 1.42073 0.89152 1.44356 1.01923 1.01691 1.85778
1.21407 0.84146 0.91071 0.97574 1.22605 0.96643 0.94501 1.01059
1.21947 0.95708 0.81833 0.97936 0.90384 1.20960 0.94429 0.84620
0.95508 0.98223 1.21499 0.95350 0.98002 1.00378 1.21952 0.99625
0.92017 1.02242 1.22178 0.78708 0.99363 1.01767 1.48134 1.16266
1.12740 1.55918 1.21202 0.84594 0.87151 0.76800 1.90703 1.20974
1.75978 1.58015 1.21482 0.99787 0.91092 0.99605 1.21426 1.01086
0.97387 0.94581 1.22514 0.95833 0.93929 1.06042 1.21621 0.89031
0.78737 0.86888 1.92989 1.90348 1.44600 1.91204 1.92980 1.70783
1.86553 1.69839 1.22531 1.03194 0.98767 0.94005 1.21305 0.96680
0.92966 1.02851 0.94524 0.98294 0.96132 0.92000 0.91754 0.92799
0.91826 0.86982 0.91467 0.89591 0.85716 0.84240 0.93287 0.88408
0.84784 0.88765 0.85227 0.89080 0.89662 0.92935
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.96 -59.54 10.49 21.65 0.23 -59.31 16
2 C -0.07 -4.10 5.49 84.86 0.47 -3.63 16
3 Si 0.98 46.18 29.56 68.60 2.03 48.21 16
4 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16
5 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16
6 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16
7 C -0.23 -12.97 9.96 84.03 0.84 -12.13 16
8 H 0.09 4.71 7.29 -2.91 -0.02 4.69 16
9 N -0.61 -32.17 3.35 -670.44 -2.25 -34.41 16
10 C 0.18 9.88 5.46 86.87 0.47 10.35 16
11 C -0.11 -4.84 4.94 31.59 0.16 -4.68 16
12 C 0.13 4.79 3.30 46.15 0.15 4.94 16
13 H 0.08 2.88 8.12 -2.39 -0.02 2.86 16
14 C 0.15 6.17 2.60 45.52 0.12 6.29 16
15 H 0.00 0.01 8.03 -2.38 -0.02 0.00 16
16 C -0.11 -3.44 5.43 30.36 0.16 -3.28 16
17 C -0.12 -2.13 5.95 30.89 0.18 -1.94 16
18 C 0.10 1.52 6.24 86.03 0.54 2.06 16
19 N -0.60 -15.66 2.91 -791.07 -2.30 -17.97 16
20 C 0.51 13.85 6.74 87.66 0.59 14.44 16
21 O -0.58 -21.47 13.09 -3.03 -0.04 -21.51 16
22 C -0.10 -1.56 1.73 -11.54 -0.02 -1.58 16
23 C -0.11 -1.62 5.00 30.59 0.15 -1.47 16
24 C -0.15 -1.53 5.45 30.59 0.17 -1.36 16
25 C 0.27 4.23 2.10 30.59 0.06 4.29 16
26 F -0.21 -3.65 17.06 44.97 0.77 -2.88 16
27 F -0.22 -5.09 16.03 44.97 0.72 -4.37 16
28 C -0.15 -1.70 5.46 30.61 0.17 -1.54 16
29 C -0.10 -1.69 4.62 30.61 0.14 -1.55 16
30 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16
31 H 0.00 -0.07 7.69 -2.39 -0.02 -0.09 16
32 H 0.02 1.21 7.35 -2.39 -0.02 1.19 16
33 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16
34 H 0.06 3.01 6.38 -2.39 -0.02 2.99 16
35 H 0.05 1.75 7.71 -2.39 -0.02 1.74 16
36 H 0.06 1.93 8.09 -2.39 -0.02 1.92 16
37 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16
38 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16
39 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16
40 H 0.12 0.83 5.56 -2.39 -0.01 0.82 16
41 H 0.14 0.98 6.37 -2.38 -0.02 0.96 16
42 H 0.05 1.09 7.80 -2.39 -0.02 1.07 16
43 H 0.10 1.26 8.07 -2.38 -0.02 1.24 16
44 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16
45 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16
46 H 0.13 0.63 8.14 -2.38 -0.02 0.61 16
47 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16
48 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16
49 H 0.05 1.26 7.53 -2.39 -0.02 1.24 16
Total: -1.00 -79.23 371.84 4.45 -74.79
By element:
Atomic # 1 Polarization: 7.29 SS G_CDS: 0.94 Total: 8.23 kcal
Atomic # 6 Polarization: 4.87 SS G_CDS: 4.35 Total: 9.22 kcal
Atomic # 7 Polarization: -107.36 SS G_CDS: -4.32 Total: -111.69 kcal
Atomic # 8 Polarization: -21.47 SS G_CDS: -0.04 Total: -21.51 kcal
Atomic # 9 Polarization: -8.74 SS G_CDS: 1.49 Total: -7.26 kcal
Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal
Total: -79.23 4.45 -74.79 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049746443.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -59.725 kcal
(2) G-P(sol) polarization free energy of solvation -79.235 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.960 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.446 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.789 kcal
(6) G-S(sol) free energy of system = (1) + (5) -134.514 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds