Wall clock time and date at job start Sat Apr 11 2020 06:41:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31627 * 1
3 3 Si 1.86796 * 120.00070 * 2 1
4 4 H 1.48499 * 109.47094 * 179.97438 * 3 2 1
5 5 H 1.48494 * 109.47551 * 300.00378 * 3 2 1
6 6 H 1.48507 * 109.46954 * 60.00421 * 3 2 1
7 7 C 1.38809 * 119.99742 * 180.02562 * 2 1 3
8 8 H 1.08000 * 120.00085 * 163.07706 * 7 2 1
9 9 N 1.36938 * 120.00290 * 343.07559 * 7 2 1
10 10 C 1.46927 * 120.62751 * 331.83111 * 9 7 2
11 11 C 1.53195 * 108.77730 * 233.58362 * 10 9 7
12 12 C 1.53036 * 109.31516 * 305.37085 * 11 10 9
13 13 H 1.09004 * 109.45692 * 301.35623 * 12 11 10
14 14 N 1.46494 * 109.46140 * 181.38123 * 12 11 10
15 15 C 1.34781 * 119.99767 * 84.99894 * 14 12 11
16 16 O 1.21276 * 120.00070 * 0.02562 * 15 14 12
17 17 C 1.50704 * 119.99864 * 180.02562 * 15 14 12
18 18 C 1.52998 * 109.46947 * 179.97438 * 17 15 14
19 19 O 1.42902 * 109.47103 * 179.97438 * 18 17 15
20 20 C 1.42898 * 114.00169 * 179.97438 * 19 18 17
21 21 C 1.53181 * 109.54223 * 90.43409 * 20 19 18
22 22 C 1.53100 * 109.16133 * 176.83724 * 21 20 19
23 23 O 1.42905 * 109.42312 * 302.40907 * 22 21 20
24 24 C 1.42900 * 114.09678 * 61.15298 * 23 22 21
25 25 C 1.53090 * 109.41769 * 298.83825 * 24 23 22
26 26 C 1.53041 * 109.53748 * 61.36101 * 12 11 10
27 27 H 1.08998 * 109.49808 * 58.59107 * 26 12 11
28 28 O 1.42907 * 109.49697 * 178.68629 * 26 12 11
29 29 C 1.46924 * 120.63359 * 151.81148 * 9 7 2
30 30 H 0.97004 * 119.99514 * 359.97438 * 1 2 3
31 31 H 1.09002 * 109.58519 * 113.80421 * 10 9 7
32 32 H 1.08996 * 109.58985 * 353.38040 * 10 9 7
33 33 H 1.09003 * 109.49743 * 185.41287 * 11 10 9
34 34 H 1.09000 * 109.49075 * 65.32387 * 11 10 9
35 35 H 0.97000 * 120.00708 * 264.99871 * 14 12 11
36 36 H 1.09003 * 109.46718 * 60.00111 * 17 15 14
37 37 H 1.09002 * 109.47267 * 299.99856 * 17 15 14
38 38 H 1.08995 * 109.47309 * 60.00328 * 18 17 15
39 39 H 1.09003 * 109.47624 * 299.99860 * 18 17 15
40 40 H 1.08999 * 109.61480 * 330.22570 * 20 19 18
41 41 H 1.09000 * 109.51127 * 56.94105 * 21 20 19
42 42 H 1.09003 * 109.53147 * 296.74600 * 21 20 19
43 43 H 1.08996 * 109.48051 * 182.42068 * 22 21 20
44 44 H 1.08998 * 109.47786 * 62.39491 * 22 21 20
45 45 H 1.08999 * 109.48287 * 58.82495 * 24 23 22
46 46 H 1.09006 * 109.47906 * 178.84904 * 24 23 22
47 47 H 1.09000 * 109.52638 * 177.51248 * 25 24 23
48 48 H 1.09006 * 109.52671 * 297.70786 * 25 24 23
49 49 H 0.96699 * 114.00061 * 180.02562 * 28 26 12
50 50 H 1.08996 * 109.58710 * 246.20220 * 29 9 7
51 51 H 1.08997 * 109.58518 * 6.48592 * 29 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 3.7102 1.3463 0.0006
5 1 1.8915 2.3965 -1.2124
6 1 1.8916 2.3964 1.2126
7 6 2.0103 -1.2022 -0.0005
8 1 3.0552 -1.2223 -0.2728
9 7 1.3701 -2.3625 0.3442
10 6 0.2263 -2.3410 1.2661
11 6 0.4977 -3.3212 2.4117
12 6 0.8120 -4.7023 1.8323
13 1 -0.0282 -5.0418 1.2265
14 7 1.0397 -5.6501 2.9258
15 6 -0.0050 -6.2736 3.5057
16 8 -1.1336 -6.0504 3.1218
17 6 0.2291 -7.2482 4.6311
18 6 -1.1122 -7.8095 5.1070
19 8 -0.8901 -8.7341 6.1738
20 6 -2.0855 -9.3191 6.6943
21 6 -2.3977 -10.6108 5.9323
22 6 -3.6341 -11.2711 6.5480
23 8 -3.3978 -11.5221 7.9349
24 6 -3.1473 -10.3456 8.7063
25 6 -1.8912 -9.6483 8.1776
26 6 2.0673 -4.6182 0.9608
27 1 2.9024 -4.2551 1.5599
28 8 2.3776 -5.9143 0.4450
29 6 1.8136 -3.6527 -0.2012
30 1 -0.4849 0.8401 0.0004
31 1 -0.6770 -2.6410 0.7348
32 1 0.0995 -1.3356 1.6677
33 1 -0.3828 -3.3866 3.0509
34 1 1.3475 -2.9702 2.9971
35 1 1.9424 -5.8290 3.2327
36 1 0.7225 -6.7369 5.4577
37 1 0.8607 -8.0641 4.2797
38 1 -1.6060 -8.3207 4.2807
39 1 -1.7435 -6.9934 5.4586
40 1 -2.9142 -8.6200 6.5814
41 1 -1.5482 -11.2900 6.0039
42 1 -2.5922 -10.3783 4.8853
43 1 -3.8356 -12.2127 6.0374
44 1 -4.4923 -10.6079 6.4397
45 1 -3.9990 -9.6702 8.6263
46 1 -2.9982 -10.6206 9.7506
47 1 -1.7233 -8.7274 8.7361
48 1 -1.0315 -10.3082 8.2946
49 1 3.1639 -5.9358 -0.1174
50 1 1.0398 -4.0597 -0.8521
51 1 2.7329 -3.5124 -0.7698
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001100071388.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:41:49
Heat of formation + Delta-G solvation = -168.089403 kcal
Electronic energy + Delta-G solvation = -30305.888192 eV
Core-core repulsion = 26012.492457 eV
Total energy + Delta-G solvation = -4293.395735 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 342.203 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-40.08796 -39.75092 -38.17075 -37.57588 -35.43865 -34.34764 -33.30394 -32.07309
-31.55636 -31.15345 -29.84236 -28.53801 -25.56255 -24.77781 -24.09242 -23.46335
-22.37739 -21.72630 -20.80779 -20.14392 -19.42739 -17.71890 -17.15813 -16.68771
-16.63934 -16.53374 -16.17893 -16.02675 -15.77437 -15.25639 -14.93031 -14.81318
-14.43609 -14.02628 -13.94106 -13.78567 -13.56338 -13.42237 -13.16241 -12.86325
-12.72513 -12.39635 -12.26553 -11.98827 -11.91328 -11.74976 -11.60528 -11.38156
-11.14212 -11.11229 -10.92013 -10.77301 -10.70513 -10.35650 -10.28240 -10.10923
-9.99214 -9.85610 -9.75787 -9.74720 -9.44520 -8.78637 -8.48957 -6.80111
-5.88096 -3.32786 2.78283 2.94213 3.31579 3.39531 3.41423 3.44092
3.69158 4.32641 4.33796 4.37635 4.48803 4.53585 4.65285 4.72857
4.78233 4.87227 4.92138 5.01437 5.13795 5.23007 5.25099 5.26338
5.29438 5.39228 5.41917 5.46243 5.52055 5.56462 5.60355 5.63917
5.73658 5.74521 5.82221 5.93728 6.08215 6.28465 6.45070 6.49288
6.63039 6.73922 6.74373 6.83181 6.93150 7.25396 7.56957 7.69414
7.70208 7.88511 8.34551 8.39164 9.09948 9.72219 10.28188 11.20472
Molecular weight = 342.20amu
Principal moments of inertia in cm(-1)
A = 0.024153 B = 0.001795 C = 0.001734
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1158.990790 B =15591.047286 C =16144.304498
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.899 5.899
2 C 0.005 3.995
3 Si 0.904 3.096
4 H -0.277 1.277
5 H -0.289 1.289
6 H -0.288 1.288
7 C -0.259 4.259
8 H 0.067 0.933
9 N -0.588 5.588
10 C 0.171 3.829
11 C -0.146 4.146
12 C 0.162 3.838
13 H 0.087 0.913
14 N -0.714 5.714
15 C 0.515 3.485
16 O -0.545 6.545
17 C -0.139 4.139
18 C 0.078 3.922
19 O -0.383 6.383
20 C 0.091 3.909
21 C -0.180 4.180
22 C 0.063 3.937
23 O -0.383 6.383
24 C 0.063 3.937
25 C -0.153 4.153
26 C 0.080 3.920
27 H 0.056 0.944
28 O -0.571 6.571
29 C 0.121 3.879
30 H 0.255 0.745
31 H 0.024 0.976
32 H 0.093 0.907
33 H 0.062 0.938
34 H 0.058 0.942
35 H 0.397 0.603
36 H 0.099 0.901
37 H 0.099 0.901
38 H 0.058 0.942
39 H 0.059 0.941
40 H 0.063 0.937
41 H 0.081 0.919
42 H 0.077 0.923
43 H 0.098 0.902
44 H 0.052 0.948
45 H 0.052 0.948
46 H 0.100 0.900
47 H 0.081 0.919
48 H 0.081 0.919
49 H 0.374 0.626
50 H 0.029 0.971
51 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.381 -19.750 14.352 24.453
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.542 5.542
2 C -0.195 4.195
3 Si 0.734 3.266
4 H -0.202 1.202
5 H -0.216 1.216
6 H -0.215 1.215
7 C -0.389 4.389
8 H 0.085 0.915
9 N -0.312 5.312
10 C 0.045 3.955
11 C -0.187 4.187
12 C 0.059 3.941
13 H 0.105 0.895
14 N -0.364 5.364
15 C 0.301 3.699
16 O -0.423 6.423
17 C -0.179 4.179
18 C 0.001 3.999
19 O -0.302 6.302
20 C 0.033 3.967
21 C -0.218 4.218
22 C -0.014 4.014
23 O -0.302 6.302
24 C -0.014 4.014
25 C -0.191 4.191
26 C 0.019 3.981
27 H 0.074 0.926
28 O -0.376 6.376
29 C -0.007 4.007
30 H 0.065 0.935
31 H 0.042 0.958
32 H 0.111 0.889
33 H 0.080 0.920
34 H 0.077 0.923
35 H 0.231 0.769
36 H 0.118 0.882
37 H 0.118 0.882
38 H 0.076 0.924
39 H 0.077 0.923
40 H 0.081 0.919
41 H 0.100 0.900
42 H 0.096 0.904
43 H 0.116 0.884
44 H 0.070 0.930
45 H 0.071 0.929
46 H 0.118 0.882
47 H 0.099 0.901
48 H 0.100 0.900
49 H 0.220 0.780
50 H 0.047 0.953
51 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -2.654 -19.821 14.536 24.723
hybrid contribution 1.217 1.376 -0.520 1.909
sum -1.438 -18.445 14.016 23.210
Atomic orbital electron populations
1.70049 1.05304 1.25659 1.53229 1.25094 0.95320 0.98579 1.00471
0.86202 0.79299 0.83741 0.77364 1.20215 1.21619 1.21453 1.19196
0.92563 0.84552 1.42542 0.91491 1.44047 1.35911 1.01202 1.50037
1.20832 0.88733 0.98257 0.87697 1.22602 1.00987 0.94348 1.00727
1.21010 0.97550 0.89126 0.86462 0.89455 1.46069 1.09206 1.44308
1.36789 1.20281 0.85182 0.81091 0.83335 1.90717 1.22693 1.64689
1.64215 1.21467 0.99164 0.99305 0.97943 1.22178 0.96264 0.91884
0.89555 1.87847 1.30635 1.59828 1.51904 1.22056 0.87829 0.93578
0.93262 1.22748 0.99997 0.98274 1.00771 1.22572 0.95794 1.01188
0.81824 1.87942 1.91455 1.31244 1.19531 1.22588 0.95651 0.87275
0.95840 1.22305 1.00005 1.02129 0.94686 1.22775 0.96007 0.83185
0.96137 0.92574 1.86478 1.50672 1.30521 1.69906 1.21526 0.98829
0.87421 0.92932 0.93467 0.95806 0.88883 0.91969 0.92335 0.76930
0.88239 0.88217 0.92411 0.92307 0.91874 0.90038 0.90429 0.88427
0.92962 0.92934 0.88235 0.90075 0.90032 0.77965 0.95346 0.92139
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -25.67 11.20 55.49 0.62 -25.05 16
2 C 0.00 0.12 4.92 -17.43 -0.09 0.04 16
3 Si 0.90 21.11 29.59 -169.99 -5.03 16.08 16
4 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16
5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16
6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16
7 C -0.26 -6.86 9.58 -15.06 -0.14 -7.00 16
8 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16
9 N -0.59 -14.23 2.99 -172.32 -0.52 -14.75 16
10 C 0.17 4.05 5.30 -3.71 -0.02 4.03 16
11 C -0.15 -2.83 5.65 -26.61 -0.15 -2.98 16
12 C 0.16 2.87 2.12 -67.89 -0.14 2.72 16
13 H 0.09 1.80 7.58 -51.93 -0.39 1.40 16
14 N -0.71 -10.25 4.92 -53.77 -0.26 -10.52 16
15 C 0.52 7.58 7.79 -10.98 -0.09 7.49 16
16 O -0.55 -10.20 15.64 5.56 0.09 -10.11 16
17 C -0.14 -1.49 6.07 -27.88 -0.17 -1.66 16
18 C 0.08 0.87 5.04 37.16 0.19 1.06 16
19 O -0.38 -4.10 10.00 -35.23 -0.35 -4.45 16
20 C 0.09 0.80 2.70 -26.54 -0.07 0.73 16
21 C -0.18 -1.45 5.76 -26.59 -0.15 -1.61 16
22 C 0.06 0.46 6.84 37.21 0.25 0.71 16
23 O -0.38 -3.37 10.77 -35.23 -0.38 -3.74 16
24 C 0.06 0.42 6.84 37.20 0.25 0.68 16
25 C -0.15 -1.15 5.79 -26.59 -0.15 -1.30 16
26 C 0.08 1.33 3.14 -26.61 -0.08 1.25 16
27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16
28 O -0.57 -8.33 13.16 -35.23 -0.46 -8.79 16
29 C 0.12 2.42 6.14 -3.71 -0.02 2.40 16
30 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16
31 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16
32 H 0.09 2.45 6.06 -51.93 -0.31 2.14 16
33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16
34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16
35 H 0.40 4.62 8.60 -40.82 -0.35 4.27 16
36 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16
37 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16
38 H 0.06 0.68 7.95 -51.93 -0.41 0.27 16
39 H 0.06 0.69 8.05 -51.93 -0.42 0.27 16
40 H 0.06 0.54 7.79 -51.93 -0.40 0.13 16
41 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16
42 H 0.08 0.61 7.99 -51.93 -0.42 0.20 16
43 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16
44 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16
45 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16
46 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16
47 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16
48 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16
49 H 0.37 3.88 9.08 45.56 0.41 4.29 16
50 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16
51 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16
LS Contribution 404.50 15.07 6.10 6.10
Total: -1.00 -32.68 404.50 -8.96 -41.64
By element:
Atomic # 1 Polarization: 15.20 SS G_CDS: -8.18 Total: 7.03 kcal
Atomic # 6 Polarization: 7.15 SS G_CDS: -0.59 Total: 6.56 kcal
Atomic # 7 Polarization: -50.15 SS G_CDS: -0.16 Total: -50.31 kcal
Atomic # 8 Polarization: -25.99 SS G_CDS: -1.11 Total: -27.10 kcal
Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal
Total LS contribution 6.10 Total: 6.10 kcal
Total: -32.68 -8.96 -41.64 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001100071388.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -126.450 kcal
(2) G-P(sol) polarization free energy of solvation -32.676 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.126 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.639 kcal
(6) G-S(sol) free energy of system = (1) + (5) -168.089 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds