Wall clock time and date at job start Sat Apr 11 2020 06:41:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31627 * 1
3 3 Si 1.86796 * 120.00070 * 2 1
4 4 H 1.48499 * 109.47094 * 179.97438 * 3 2 1
5 5 H 1.48494 * 109.47551 * 300.00378 * 3 2 1
6 6 H 1.48507 * 109.46954 * 60.00421 * 3 2 1
7 7 C 1.38809 * 119.99742 * 180.02562 * 2 1 3
8 8 H 1.08000 * 120.00085 * 163.07706 * 7 2 1
9 9 N 1.36938 * 120.00290 * 343.07559 * 7 2 1
10 10 C 1.46927 * 120.62751 * 331.83111 * 9 7 2
11 11 C 1.53195 * 108.77730 * 233.58362 * 10 9 7
12 12 C 1.53036 * 109.31516 * 305.37085 * 11 10 9
13 13 H 1.09004 * 109.45692 * 301.35623 * 12 11 10
14 14 N 1.46494 * 109.46140 * 181.38123 * 12 11 10
15 15 C 1.34781 * 119.99767 * 84.99894 * 14 12 11
16 16 O 1.21276 * 120.00070 * 0.02562 * 15 14 12
17 17 C 1.50704 * 119.99864 * 180.02562 * 15 14 12
18 18 C 1.52998 * 109.46947 * 179.97438 * 17 15 14
19 19 O 1.42902 * 109.47103 * 179.97438 * 18 17 15
20 20 C 1.42898 * 114.00169 * 179.97438 * 19 18 17
21 21 C 1.53181 * 109.54223 * 90.43409 * 20 19 18
22 22 C 1.53100 * 109.16133 * 176.83724 * 21 20 19
23 23 O 1.42905 * 109.42312 * 302.40907 * 22 21 20
24 24 C 1.42900 * 114.09678 * 61.15298 * 23 22 21
25 25 C 1.53090 * 109.41769 * 298.83825 * 24 23 22
26 26 C 1.53041 * 109.53748 * 61.36101 * 12 11 10
27 27 H 1.08998 * 109.49808 * 58.59107 * 26 12 11
28 28 O 1.42907 * 109.49697 * 178.68629 * 26 12 11
29 29 C 1.46924 * 120.63359 * 151.81148 * 9 7 2
30 30 H 0.97004 * 119.99514 * 359.97438 * 1 2 3
31 31 H 1.09002 * 109.58519 * 113.80421 * 10 9 7
32 32 H 1.08996 * 109.58985 * 353.38040 * 10 9 7
33 33 H 1.09003 * 109.49743 * 185.41287 * 11 10 9
34 34 H 1.09000 * 109.49075 * 65.32387 * 11 10 9
35 35 H 0.97000 * 120.00708 * 264.99871 * 14 12 11
36 36 H 1.09003 * 109.46718 * 60.00111 * 17 15 14
37 37 H 1.09002 * 109.47267 * 299.99856 * 17 15 14
38 38 H 1.08995 * 109.47309 * 60.00328 * 18 17 15
39 39 H 1.09003 * 109.47624 * 299.99860 * 18 17 15
40 40 H 1.08999 * 109.61480 * 330.22570 * 20 19 18
41 41 H 1.09000 * 109.51127 * 56.94105 * 21 20 19
42 42 H 1.09003 * 109.53147 * 296.74600 * 21 20 19
43 43 H 1.08996 * 109.48051 * 182.42068 * 22 21 20
44 44 H 1.08998 * 109.47786 * 62.39491 * 22 21 20
45 45 H 1.08999 * 109.48287 * 58.82495 * 24 23 22
46 46 H 1.09006 * 109.47906 * 178.84904 * 24 23 22
47 47 H 1.09000 * 109.52638 * 177.51248 * 25 24 23
48 48 H 1.09006 * 109.52671 * 297.70786 * 25 24 23
49 49 H 0.96699 * 114.00061 * 180.02562 * 28 26 12
50 50 H 1.08996 * 109.58710 * 246.20220 * 29 9 7
51 51 H 1.08997 * 109.58518 * 6.48592 * 29 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 3.7102 1.3463 0.0006
5 1 1.8915 2.3965 -1.2124
6 1 1.8916 2.3964 1.2126
7 6 2.0103 -1.2022 -0.0005
8 1 3.0552 -1.2223 -0.2728
9 7 1.3701 -2.3625 0.3442
10 6 0.2263 -2.3410 1.2661
11 6 0.4977 -3.3212 2.4117
12 6 0.8120 -4.7023 1.8323
13 1 -0.0282 -5.0418 1.2265
14 7 1.0397 -5.6501 2.9258
15 6 -0.0050 -6.2736 3.5057
16 8 -1.1336 -6.0504 3.1218
17 6 0.2291 -7.2482 4.6311
18 6 -1.1122 -7.8095 5.1070
19 8 -0.8901 -8.7341 6.1738
20 6 -2.0855 -9.3191 6.6943
21 6 -2.3977 -10.6108 5.9323
22 6 -3.6341 -11.2711 6.5480
23 8 -3.3978 -11.5221 7.9349
24 6 -3.1473 -10.3456 8.7063
25 6 -1.8912 -9.6483 8.1776
26 6 2.0673 -4.6182 0.9608
27 1 2.9024 -4.2551 1.5599
28 8 2.3776 -5.9143 0.4450
29 6 1.8136 -3.6527 -0.2012
30 1 -0.4849 0.8401 0.0004
31 1 -0.6770 -2.6410 0.7348
32 1 0.0995 -1.3356 1.6677
33 1 -0.3828 -3.3866 3.0509
34 1 1.3475 -2.9702 2.9971
35 1 1.9424 -5.8290 3.2327
36 1 0.7225 -6.7369 5.4577
37 1 0.8607 -8.0641 4.2797
38 1 -1.6060 -8.3207 4.2807
39 1 -1.7435 -6.9934 5.4586
40 1 -2.9142 -8.6200 6.5814
41 1 -1.5482 -11.2900 6.0039
42 1 -2.5922 -10.3783 4.8853
43 1 -3.8356 -12.2127 6.0374
44 1 -4.4923 -10.6079 6.4397
45 1 -3.9990 -9.6702 8.6263
46 1 -2.9982 -10.6206 9.7506
47 1 -1.7233 -8.7274 8.7361
48 1 -1.0315 -10.3082 8.2946
49 1 3.1639 -5.9358 -0.1174
50 1 1.0398 -4.0597 -0.8521
51 1 2.7329 -3.5124 -0.7698
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001100071388.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:41:48
Heat of formation + Delta-G solvation = -193.653239 kcal
Electronic energy + Delta-G solvation = -30306.996724 eV
Core-core repulsion = 26012.492457 eV
Total energy + Delta-G solvation = -4294.504266 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 342.203 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-41.19877 -40.57584 -39.51123 -38.43257 -36.97994 -35.77290 -34.12077 -33.74676
-32.32251 -32.11945 -31.34529 -30.11818 -27.18693 -25.68594 -24.81300 -24.45061
-23.90746 -23.28520 -21.56588 -21.37607 -20.90010 -18.98900 -18.49719 -18.02403
-17.53064 -17.43018 -17.25314 -16.94987 -16.72644 -16.69840 -15.91142 -15.80221
-15.69974 -15.54146 -15.17732 -14.99545 -14.74706 -14.54694 -14.44897 -14.12756
-13.86840 -13.65257 -13.36512 -13.28687 -13.00094 -12.94553 -12.76580 -12.69677
-12.37613 -12.34104 -12.11071 -12.09937 -12.05181 -11.89576 -11.81736 -11.40276
-11.37900 -11.10832 -10.89122 -10.69026 -10.58834 -10.52255 -10.03801 -8.77506
-7.91602 -5.39554 1.46993 1.49077 1.59536 1.61855 1.93513 2.48173
2.70524 2.94263 3.12419 3.26092 3.62096 3.69446 3.72041 3.76355
3.87500 3.95740 4.01909 4.02841 4.07496 4.15688 4.22113 4.24704
4.35198 4.38562 4.48391 4.52268 4.56949 4.67099 4.70799 4.74299
4.78242 4.78719 4.84142 4.84952 4.95524 5.01659 5.02757 5.10029
5.11426 5.18056 5.36261 5.48546 5.59319 5.64730 6.14310 6.19916
6.32907 6.56121 6.88263 7.08492 7.25949 7.76668 8.29419 9.15838
Molecular weight = 342.20amu
Principal moments of inertia in cm(-1)
A = 0.024153 B = 0.001795 C = 0.001734
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1158.990790 B =15591.047286 C =16144.304498
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.937 5.937
2 C -0.052 4.052
3 Si 0.971 3.029
4 H -0.261 1.261
5 H -0.295 1.295
6 H -0.291 1.291
7 C -0.264 4.264
8 H 0.077 0.923
9 N -0.603 5.603
10 C 0.179 3.821
11 C -0.128 4.128
12 C 0.170 3.830
13 H 0.054 0.946
14 N -0.702 5.702
15 C 0.513 3.487
16 O -0.590 6.590
17 C -0.125 4.125
18 C 0.081 3.919
19 O -0.388 6.388
20 C 0.082 3.918
21 C -0.177 4.177
22 C 0.062 3.938
23 O -0.401 6.401
24 C 0.061 3.939
25 C -0.149 4.149
26 C 0.103 3.897
27 H 0.075 0.925
28 O -0.571 6.571
29 C 0.117 3.883
30 H 0.251 0.749
31 H -0.010 1.010
32 H 0.062 0.938
33 H 0.057 0.943
34 H 0.071 0.929
35 H 0.416 0.584
36 H 0.123 0.877
37 H 0.122 0.878
38 H 0.047 0.953
39 H 0.049 0.951
40 H 0.065 0.935
41 H 0.073 0.927
42 H 0.076 0.924
43 H 0.109 0.891
44 H 0.060 0.940
45 H 0.061 0.939
46 H 0.116 0.884
47 H 0.089 0.911
48 H 0.074 0.926
49 H 0.396 0.604
50 H 0.010 0.990
51 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.846 -21.038 15.725 26.279
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.583 5.583
2 C -0.248 4.248
3 Si 0.799 3.201
4 H -0.185 1.185
5 H -0.222 1.222
6 H -0.218 1.218
7 C -0.393 4.393
8 H 0.095 0.905
9 N -0.328 5.328
10 C 0.053 3.947
11 C -0.169 4.169
12 C 0.064 3.936
13 H 0.072 0.928
14 N -0.353 5.353
15 C 0.301 3.699
16 O -0.471 6.471
17 C -0.165 4.165
18 C 0.004 3.996
19 O -0.308 6.308
20 C 0.024 3.976
21 C -0.215 4.215
22 C -0.015 4.015
23 O -0.320 6.320
24 C -0.016 4.016
25 C -0.187 4.187
26 C 0.041 3.959
27 H 0.093 0.907
28 O -0.378 6.378
29 C -0.010 4.010
30 H 0.060 0.940
31 H 0.008 0.992
32 H 0.081 0.919
33 H 0.076 0.924
34 H 0.090 0.910
35 H 0.253 0.747
36 H 0.142 0.858
37 H 0.140 0.860
38 H 0.065 0.935
39 H 0.067 0.933
40 H 0.083 0.917
41 H 0.092 0.908
42 H 0.094 0.906
43 H 0.127 0.873
44 H 0.078 0.922
45 H 0.080 0.920
46 H 0.134 0.866
47 H 0.107 0.893
48 H 0.093 0.907
49 H 0.246 0.754
50 H 0.028 0.972
51 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -0.357 -21.161 15.917 26.481
hybrid contribution 0.498 1.692 -1.003 2.029
sum 0.141 -19.469 14.914 24.525
Atomic orbital electron populations
1.70217 1.06951 1.25990 1.55135 1.25908 0.96014 1.01897 1.00955
0.85155 0.78831 0.79499 0.76617 1.18457 1.22199 1.21798 1.19601
0.93092 0.85415 1.41234 0.90492 1.44256 1.35675 1.02275 1.50578
1.20553 0.87810 0.97662 0.88716 1.22314 1.01244 0.94462 0.98842
1.20616 0.97145 0.88547 0.87279 0.92814 1.45833 1.10322 1.43371
1.35745 1.20994 0.84320 0.81011 0.83608 1.90709 1.24590 1.66145
1.65660 1.21402 0.99307 0.98902 0.96891 1.22063 0.96422 0.91642
0.89451 1.87827 1.31612 1.59706 1.51618 1.22264 0.87345 0.93776
0.94206 1.22707 1.00198 0.97835 1.00715 1.22656 0.95513 1.01907
0.81384 1.87918 1.91531 1.32424 1.20172 1.22737 0.95541 0.86909
0.96372 1.22285 1.00187 1.02408 0.93773 1.22298 0.95817 0.83223
0.94514 0.90681 1.86450 1.52252 1.28654 1.70432 1.21703 0.98656
0.86334 0.94312 0.94040 0.99203 0.91941 0.92446 0.91038 0.74750
0.85845 0.86034 0.93453 0.93307 0.91742 0.90778 0.90577 0.87330
0.92184 0.92026 0.86649 0.89272 0.90720 0.75370 0.97214 0.90597
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -55.39 11.20 21.65 0.24 -55.15 16
2 C -0.05 -2.86 4.92 84.86 0.42 -2.44 16
3 Si 0.97 43.65 29.59 68.60 2.03 45.68 16
4 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16
5 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16
6 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16
7 C -0.26 -13.90 9.58 84.03 0.81 -13.09 16
8 H 0.08 3.84 7.88 -2.91 -0.02 3.82 16
9 N -0.60 -29.42 2.99 -699.11 -2.09 -31.51 16
10 C 0.18 8.81 5.30 86.36 0.46 9.27 16
11 C -0.13 -4.98 5.65 30.67 0.17 -4.81 16
12 C 0.17 5.86 2.12 45.02 0.10 5.96 16
13 H 0.05 2.25 7.58 -2.39 -0.02 2.24 16
14 N -0.70 -18.67 4.92 -442.41 -2.18 -20.85 16
15 C 0.51 14.39 7.79 87.66 0.68 15.07 16
16 O -0.59 -22.26 15.64 -3.02 -0.05 -22.31 16
17 C -0.13 -2.38 6.07 29.85 0.18 -2.20 16
18 C 0.08 1.73 5.04 71.98 0.36 2.10 16
19 O -0.39 -7.74 10.00 -148.98 -1.49 -9.23 16
20 C 0.08 1.36 2.70 30.72 0.08 1.44 16
21 C -0.18 -2.72 5.76 30.69 0.18 -2.54 16
22 C 0.06 0.83 6.84 72.02 0.49 1.32 16
23 O -0.40 -6.54 10.77 -148.98 -1.60 -8.15 16
24 C 0.06 0.72 6.84 72.01 0.49 1.21 16
25 C -0.15 -2.02 5.79 30.69 0.18 -1.84 16
26 C 0.10 3.19 3.14 30.67 0.10 3.29 16
27 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16
28 O -0.57 -14.87 13.16 -148.98 -1.96 -16.83 16
29 C 0.12 4.58 6.14 86.36 0.53 5.11 16
30 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16
31 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16
32 H 0.06 3.44 6.06 -2.39 -0.01 3.43 16
33 H 0.06 2.26 8.14 -2.39 -0.02 2.25 16
34 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16
35 H 0.42 8.15 8.60 -92.71 -0.80 7.35 16
36 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16
37 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16
38 H 0.05 1.10 7.95 -2.39 -0.02 1.08 16
39 H 0.05 1.13 8.05 -2.39 -0.02 1.11 16
40 H 0.06 1.05 7.79 -2.39 -0.02 1.03 16
41 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16
42 H 0.08 1.17 7.99 -2.39 -0.02 1.15 16
43 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16
44 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16
45 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16
46 H 0.12 0.97 8.14 -2.38 -0.02 0.95 16
47 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16
48 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16
49 H 0.40 6.69 9.08 -74.06 -0.67 6.01 16
50 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16
51 H 0.08 2.71 7.93 -2.39 -0.02 2.70 16
Total: -1.00 -72.75 404.50 -2.41 -75.17
By element:
Atomic # 1 Polarization: 25.87 SS G_CDS: -0.54 Total: 25.33 kcal
Atomic # 6 Polarization: 12.63 SS G_CDS: 5.23 Total: 17.85 kcal
Atomic # 7 Polarization: -103.48 SS G_CDS: -4.03 Total: -107.51 kcal
Atomic # 8 Polarization: -51.41 SS G_CDS: -5.10 Total: -56.52 kcal
Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal
Total: -72.75 -2.41 -75.17 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001100071388.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -118.485 kcal
(2) G-P(sol) polarization free energy of solvation -72.755 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.240 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.413 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.168 kcal
(6) G-S(sol) free energy of system = (1) + (5) -193.653 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds