Wall clock time and date at job start Sat Apr 11 2020 06:40:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86798 * 120.00007 * 2 1
4 4 H 1.48505 * 109.47132 * 359.97438 * 3 2 1
5 5 H 1.48500 * 109.47438 * 119.99719 * 3 2 1
6 6 H 1.48501 * 109.47419 * 239.99699 * 3 2 1
7 7 C 1.37874 * 120.00001 * 180.27146 * 2 1 3
8 8 H 1.08004 * 120.00277 * 180.02562 * 7 2 1
9 9 C 1.50702 * 120.00145 * 0.02562 * 7 2 1
10 10 N 1.46504 * 109.47123 * 180.02562 * 9 7 2
11 11 C 1.35048 * 125.93047 * 125.00282 * 10 9 7
12 12 C 1.35069 * 107.98585 * 179.97438 * 11 10 9
13 13 C 1.50702 * 126.07534 * 180.02562 * 12 11 10
14 14 N 1.46904 * 109.46936 * 105.63854 * 13 12 11
15 15 C 1.46893 * 110.99932 * 182.28830 * 14 13 12
16 16 H 1.09006 * 110.02196 * 33.60802 * 15 14 13
17 17 C 1.54266 * 110.03176 * 272.16769 * 15 14 13
18 18 C 1.54891 * 104.19369 * 217.10644 * 17 15 14
19 19 C 1.54889 * 102.75274 * 37.94217 * 18 17 15
20 20 C 1.53880 * 110.03398 * 154.99846 * 15 14 13
21 21 H 1.08999 * 110.02675 * 359.97438 * 20 15 14
22 22 O 1.42898 * 110.03489 * 238.56905 * 20 15 14
23 23 C 1.40867 * 107.85264 * 359.97438 * 12 11 10
24 24 C 1.48364 * 126.04315 * 179.97438 * 23 12 11
25 25 C 1.39776 * 120.90691 * 317.45486 * 24 23 12
26 26 C 1.37960 * 119.02266 * 179.74946 * 25 24 23
27 27 N 1.31938 * 120.87995 * 0.53009 * 26 25 24
28 28 C 1.31937 * 122.00343 * 359.71824 * 27 26 25
29 29 C 1.37958 * 120.88067 * 0.02562 * 28 27 26
30 30 N 1.31652 * 107.91649 * 359.74298 * 23 12 11
31 31 H 0.96993 * 119.99920 * 359.73018 * 1 2 3
32 32 H 1.09000 * 109.47055 * 299.99530 * 9 7 2
33 33 H 1.08996 * 109.47293 * 59.99870 * 9 7 2
34 34 H 1.08005 * 126.00619 * 359.97438 * 11 10 9
35 35 H 1.08992 * 109.47466 * 225.63890 * 13 12 11
36 36 H 1.09007 * 109.46678 * 345.64233 * 13 12 11
37 37 H 1.00900 * 110.99499 * 306.23856 * 14 13 12
38 38 H 1.09003 * 110.48315 * 335.77890 * 17 15 14
39 39 H 1.08993 * 110.48945 * 98.42537 * 17 15 14
40 40 H 1.08993 * 110.75782 * 279.62246 * 18 17 15
41 41 H 1.09003 * 110.75524 * 156.25722 * 18 17 15
42 42 H 1.08999 * 110.49002 * 203.38449 * 19 18 17
43 43 H 1.09001 * 110.60212 * 80.78673 * 19 18 17
44 44 H 0.96696 * 114.00174 * 180.02562 * 22 20 15
45 45 H 1.08000 * 120.48302 * 359.97438 * 25 24 23
46 46 H 1.07996 * 119.55859 * 180.24822 * 26 25 24
47 47 H 1.07999 * 119.56142 * 179.97438 * 28 27 26
48 48 H 1.08000 * 120.49257 * 179.97438 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 1.2841 2.7465 -0.0006
5 1 3.1028 1.6965 1.2125
6 1 3.1030 1.6964 -1.2124
7 6 2.0045 -1.1940 -0.0057
8 1 3.0845 -1.1941 -0.0052
9 6 1.2510 -2.4991 -0.0124
10 7 2.2031 -3.6126 -0.0170
11 6 2.2406 -4.6268 0.8740
12 6 3.2570 -5.4471 0.5297
13 6 3.6624 -6.7078 1.2488
14 7 3.2385 -7.8762 0.4657
15 6 3.5694 -9.1258 1.1633
16 1 3.4863 -8.9849 2.2410
17 6 4.9997 -9.5728 0.7967
18 6 4.9065 -11.1169 0.7180
19 6 3.5157 -11.3432 0.0752
20 6 2.6258 -10.2514 0.7046
21 1 1.9221 -9.8703 -0.0353
22 8 1.9173 -10.7835 1.8257
23 6 3.8700 -4.9153 -0.6218
24 6 5.0304 -5.4967 -1.3405
25 6 6.1240 -6.0127 -0.6394
26 6 7.1801 -6.5489 -1.3468
27 7 7.1708 -6.5688 -2.6661
28 6 6.1608 -6.0877 -3.3655
29 6 5.0624 -5.5381 -2.7372
30 7 3.2280 -3.8139 -0.9504
31 1 -0.4850 0.8400 0.0040
32 1 0.6241 -2.5613 0.8771
33 1 0.6247 -2.5525 -0.9029
34 1 1.5749 -4.7588 1.7142
35 1 4.7455 -6.7250 1.3696
36 1 3.1870 -6.7357 2.2294
37 1 2.2531 -7.8307 0.2532
38 1 5.2933 -9.1587 -0.1679
39 1 5.7040 -9.2721 1.5723
40 1 4.9481 -11.5577 1.7140
41 1 5.6957 -11.5196 0.0831
42 1 3.1369 -12.3344 0.3243
43 1 3.5677 -11.2164 -1.0062
44 1 1.3057 -11.4981 1.6013
45 1 6.1403 -5.9952 0.4404
46 1 8.0276 -6.9536 -0.8138
47 1 6.1948 -6.1238 -4.4444
48 1 4.2394 -5.1458 -3.3160
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001474170226.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:40:56
Heat of formation + Delta-G solvation = 53.775493 kcal
Electronic energy + Delta-G solvation = -29528.032560 eV
Core-core repulsion = 25583.859280 eV
Total energy + Delta-G solvation = -3944.173281 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-40.78243 -39.52005 -39.26243 -35.88833 -34.54974 -33.77707 -32.88225 -31.10916
-30.92129 -30.10106 -28.02749 -27.79230 -26.47428 -24.24097 -24.04942 -23.11713
-22.05350 -21.15933 -20.25019 -19.97068 -19.44667 -17.37222 -16.78017 -16.68518
-16.02914 -15.83883 -15.82184 -15.62006 -15.30339 -15.03475 -14.49384 -14.35009
-13.82138 -13.73880 -13.56053 -13.46389 -13.27483 -13.07034 -12.76592 -12.46456
-12.29035 -12.19243 -11.95255 -11.71087 -11.45594 -11.30051 -11.24620 -11.05348
-10.87294 -10.80438 -10.75070 -10.33715 -10.17100 -10.07648 -9.97681 -9.44654
-9.32738 -8.95238 -8.71076 -8.48709 -8.37464 -7.75428 -6.32406 -4.38106
1.29664 1.36746 2.59401 3.13215 3.21344 3.24939 3.28174 3.38410
3.84020 4.11072 4.24863 4.27558 4.34696 4.60830 4.66892 4.76203
4.77841 5.01754 5.04245 5.14212 5.21040 5.23789 5.29729 5.34011
5.38305 5.42621 5.45474 5.57656 5.61103 5.64799 5.72241 5.79596
5.81767 5.91476 5.93988 5.95884 6.13272 6.16270 6.23671 6.43598
6.53195 6.81939 6.87744 6.92494 7.06615 7.18962 7.32727 7.46356
7.59896 7.76619 7.85286 8.14019 8.40614 8.69692 9.28323 10.76540
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.011506 B = 0.003005 C = 0.002511
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2433.022730 B = 9314.360910 C =11148.019555
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.894 5.894
2 C 0.064 3.936
3 Si 0.908 3.092
4 H -0.284 1.284
5 H -0.274 1.274
6 H -0.273 1.273
7 C -0.532 4.532
8 H 0.069 0.931
9 C 0.256 3.744
10 N -0.317 5.317
11 C 0.056 3.944
12 C -0.245 4.245
13 C 0.145 3.855
14 N -0.673 5.673
15 C 0.089 3.911
16 H 0.058 0.942
17 C -0.111 4.111
18 C -0.121 4.121
19 C -0.151 4.151
20 C 0.096 3.904
21 H 0.063 0.937
22 O -0.568 6.568
23 C 0.084 3.916
24 C 0.071 3.929
25 C -0.148 4.148
26 C 0.094 3.906
27 N -0.494 5.494
28 C 0.095 3.905
29 C -0.151 4.151
30 N -0.259 5.259
31 H 0.269 0.731
32 H 0.056 0.944
33 H 0.047 0.953
34 H 0.165 0.835
35 H 0.075 0.925
36 H 0.032 0.968
37 H 0.340 0.660
38 H 0.081 0.919
39 H 0.063 0.937
40 H 0.066 0.934
41 H 0.066 0.934
42 H 0.067 0.933
43 H 0.074 0.926
44 H 0.376 0.624
45 H 0.132 0.868
46 H 0.151 0.849
47 H 0.152 0.848
48 H 0.134 0.866
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.951 -21.387 1.394 22.531
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.532 5.532
2 C -0.139 4.139
3 Si 0.735 3.265
4 H -0.210 1.210
5 H -0.200 1.200
6 H -0.198 1.198
7 C -0.571 4.571
8 H 0.087 0.913
9 C 0.139 3.861
10 N -0.097 5.097
11 C -0.094 4.094
12 C -0.258 4.258
13 C 0.015 3.985
14 N -0.306 5.306
15 C -0.021 4.021
16 H 0.076 0.924
17 C -0.149 4.149
18 C -0.159 4.159
19 C -0.189 4.189
20 C 0.037 3.963
21 H 0.081 0.919
22 O -0.373 6.373
23 C -0.079 4.079
24 C 0.061 3.939
25 C -0.170 4.170
26 C -0.063 4.063
27 N -0.203 5.203
28 C -0.062 4.062
29 C -0.172 4.172
30 N -0.083 5.083
31 H 0.078 0.922
32 H 0.074 0.926
33 H 0.065 0.935
34 H 0.183 0.817
35 H 0.093 0.907
36 H 0.051 0.949
37 H 0.159 0.841
38 H 0.100 0.900
39 H 0.082 0.918
40 H 0.084 0.916
41 H 0.085 0.915
42 H 0.086 0.914
43 H 0.093 0.907
44 H 0.224 0.776
45 H 0.150 0.850
46 H 0.168 0.832
47 H 0.169 0.831
48 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges 8.170 -20.013 0.070 21.617
hybrid contribution -1.595 0.344 1.495 2.213
sum 6.575 -19.669 1.565 20.798
Atomic orbital electron populations
1.69899 1.06065 1.27894 1.49372 1.24931 0.94989 0.99589 0.94391
0.86378 0.79409 0.81661 0.79049 1.20958 1.19983 1.19811 1.21182
0.93948 0.89280 1.52641 0.91319 1.19795 0.85651 0.81285 0.99374
1.49428 1.23335 1.19068 1.17859 1.22275 0.99857 0.90335 0.96966
1.19584 1.02886 1.01473 1.01832 1.20133 1.00021 0.85754 0.92542
1.60764 1.23557 1.00257 1.45996 1.22084 0.94295 0.88667 0.97084
0.92425 1.22406 0.95246 0.94639 1.02619 1.22433 0.96453 0.96409
1.00593 1.22995 0.96768 0.98478 1.00655 1.22628 0.92929 0.93470
0.87293 0.91945 1.86529 1.59749 1.56091 1.34944 1.20253 0.96875
0.94769 0.96023 1.18049 0.90674 0.93043 0.92175 1.22062 0.93877
0.99797 1.01216 1.22510 0.97316 0.96489 0.89953 1.67580 1.27476
1.16669 1.08607 1.22558 0.89119 0.94454 1.00048 1.22216 1.00204
1.00400 0.94353 1.77691 1.00755 1.16262 1.13608 0.92162 0.92624
0.93503 0.81735 0.90693 0.94947 0.84060 0.89994 0.91795 0.91551
0.91504 0.91426 0.90684 0.77636 0.84993 0.83160 0.83064 0.84792
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -24.85 13.29 55.43 0.74 -24.11 16
2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16
3 Si 0.91 21.13 29.54 -169.99 -5.02 16.11 16
4 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16
5 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16
6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16
7 C -0.53 -14.46 9.24 -34.44 -0.32 -14.78 16
8 H 0.07 1.94 7.81 -52.48 -0.41 1.53 16
9 C 0.26 6.25 6.26 -5.19 -0.03 6.22 16
10 N -0.32 -6.89 3.67 -62.58 -0.23 -7.12 16
11 C 0.06 0.99 11.32 -17.26 -0.20 0.80 16
12 C -0.24 -3.98 5.58 -104.75 -0.58 -4.57 16
13 C 0.14 1.85 5.53 -4.97 -0.03 1.82 16
14 N -0.67 -7.90 6.27 -106.80 -0.67 -8.57 16
15 C 0.09 0.92 3.06 -66.60 -0.20 0.72 16
16 H 0.06 0.67 7.59 -51.93 -0.39 0.28 16
17 C -0.11 -1.05 6.49 -25.07 -0.16 -1.22 16
18 C -0.12 -1.00 6.91 -24.74 -0.17 -1.17 16
19 C -0.15 -1.20 6.56 -25.07 -0.16 -1.36 16
20 C 0.10 0.88 3.94 -25.61 -0.10 0.78 16
21 H 0.06 0.58 7.47 -51.93 -0.39 0.19 16
22 O -0.57 -5.28 13.21 -35.23 -0.47 -5.75 16
23 C 0.08 1.54 6.72 -82.78 -0.56 0.98 16
24 C 0.07 1.12 5.77 -104.58 -0.60 0.52 16
25 C -0.15 -1.99 9.02 -39.11 -0.35 -2.35 16
26 C 0.09 1.17 11.17 -17.61 -0.20 0.97 16
27 N -0.49 -6.84 10.35 -13.35 -0.14 -6.98 16
28 C 0.09 1.26 11.17 -17.61 -0.20 1.06 16
29 C -0.15 -2.25 9.89 -39.11 -0.39 -2.64 16
30 N -0.26 -5.68 12.45 33.42 0.42 -5.26 16
31 H 0.27 7.07 8.31 -40.82 -0.34 6.74 16
32 H 0.06 1.33 8.07 -51.93 -0.42 0.92 16
33 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16
34 H 0.17 2.41 8.06 -52.48 -0.42 1.99 16
35 H 0.07 0.92 5.82 -51.93 -0.30 0.61 16
36 H 0.03 0.40 8.00 -51.93 -0.42 -0.02 16
37 H 0.34 4.11 7.97 -39.29 -0.31 3.79 16
38 H 0.08 0.89 8.05 -51.93 -0.42 0.47 16
39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16
42 H 0.07 0.45 8.06 -51.93 -0.42 0.03 16
43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
44 H 0.38 1.93 9.10 45.56 0.41 2.34 16
45 H 0.13 1.60 6.27 -52.49 -0.33 1.27 16
46 H 0.15 1.42 8.06 -52.49 -0.42 0.99 16
47 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16
48 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16
LS Contribution 399.64 15.07 6.02 6.02
Total: -1.00 -30.93 399.64 -10.03 -40.96
By element:
Atomic # 1 Polarization: 13.59 SS G_CDS: -6.33 Total: 7.26 kcal
Atomic # 6 Polarization: -8.21 SS G_CDS: -4.35 Total: -12.56 kcal
Atomic # 7 Polarization: -52.15 SS G_CDS: 0.12 Total: -52.04 kcal
Atomic # 8 Polarization: -5.28 SS G_CDS: -0.47 Total: -5.75 kcal
Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal
Total LS contribution 6.02 Total: 6.02 kcal
Total: -30.93 -10.03 -40.96 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001474170226.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 94.738 kcal
(2) G-P(sol) polarization free energy of solvation -30.930 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.808 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.033 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.963 kcal
(6) G-S(sol) free energy of system = (1) + (5) 53.775 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds