Wall clock time and date at job start Sat Apr 11 2020 06:40:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86798 * 120.00007 * 2 1
4 4 H 1.48505 * 109.47132 * 359.97438 * 3 2 1
5 5 H 1.48500 * 109.47438 * 119.99719 * 3 2 1
6 6 H 1.48501 * 109.47419 * 239.99699 * 3 2 1
7 7 C 1.37874 * 120.00001 * 180.27146 * 2 1 3
8 8 H 1.08004 * 120.00277 * 180.02562 * 7 2 1
9 9 C 1.50702 * 120.00145 * 0.02562 * 7 2 1
10 10 N 1.46504 * 109.47123 * 180.02562 * 9 7 2
11 11 C 1.35048 * 125.93047 * 125.00282 * 10 9 7
12 12 C 1.35069 * 107.98585 * 179.97438 * 11 10 9
13 13 C 1.50702 * 126.07534 * 180.02562 * 12 11 10
14 14 N 1.46904 * 109.46936 * 105.63854 * 13 12 11
15 15 C 1.46893 * 110.99932 * 182.28830 * 14 13 12
16 16 H 1.09006 * 110.02196 * 33.60802 * 15 14 13
17 17 C 1.54266 * 110.03176 * 272.16769 * 15 14 13
18 18 C 1.54891 * 104.19369 * 217.10644 * 17 15 14
19 19 C 1.54889 * 102.75274 * 37.94217 * 18 17 15
20 20 C 1.53880 * 110.03398 * 154.99846 * 15 14 13
21 21 H 1.08999 * 110.02675 * 359.97438 * 20 15 14
22 22 O 1.42898 * 110.03489 * 238.56905 * 20 15 14
23 23 C 1.40867 * 107.85264 * 359.97438 * 12 11 10
24 24 C 1.48364 * 126.04315 * 179.97438 * 23 12 11
25 25 C 1.39776 * 120.90691 * 317.45486 * 24 23 12
26 26 C 1.37960 * 119.02266 * 179.74946 * 25 24 23
27 27 N 1.31938 * 120.87995 * 0.53009 * 26 25 24
28 28 C 1.31937 * 122.00343 * 359.71824 * 27 26 25
29 29 C 1.37958 * 120.88067 * 0.02562 * 28 27 26
30 30 N 1.31652 * 107.91649 * 359.74298 * 23 12 11
31 31 H 0.96993 * 119.99920 * 359.73018 * 1 2 3
32 32 H 1.09000 * 109.47055 * 299.99530 * 9 7 2
33 33 H 1.08996 * 109.47293 * 59.99870 * 9 7 2
34 34 H 1.08005 * 126.00619 * 359.97438 * 11 10 9
35 35 H 1.08992 * 109.47466 * 225.63890 * 13 12 11
36 36 H 1.09007 * 109.46678 * 345.64233 * 13 12 11
37 37 H 1.00900 * 110.99499 * 306.23856 * 14 13 12
38 38 H 1.09003 * 110.48315 * 335.77890 * 17 15 14
39 39 H 1.08993 * 110.48945 * 98.42537 * 17 15 14
40 40 H 1.08993 * 110.75782 * 279.62246 * 18 17 15
41 41 H 1.09003 * 110.75524 * 156.25722 * 18 17 15
42 42 H 1.08999 * 110.49002 * 203.38449 * 19 18 17
43 43 H 1.09001 * 110.60212 * 80.78673 * 19 18 17
44 44 H 0.96696 * 114.00174 * 180.02562 * 22 20 15
45 45 H 1.08000 * 120.48302 * 359.97438 * 25 24 23
46 46 H 1.07996 * 119.55859 * 180.24822 * 26 25 24
47 47 H 1.07999 * 119.56142 * 179.97438 * 28 27 26
48 48 H 1.08000 * 120.49257 * 179.97438 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 1.2841 2.7465 -0.0006
5 1 3.1028 1.6965 1.2125
6 1 3.1030 1.6964 -1.2124
7 6 2.0045 -1.1940 -0.0057
8 1 3.0845 -1.1941 -0.0052
9 6 1.2510 -2.4991 -0.0124
10 7 2.2031 -3.6126 -0.0170
11 6 2.2406 -4.6268 0.8740
12 6 3.2570 -5.4471 0.5297
13 6 3.6624 -6.7078 1.2488
14 7 3.2385 -7.8762 0.4657
15 6 3.5694 -9.1258 1.1633
16 1 3.4863 -8.9849 2.2410
17 6 4.9997 -9.5728 0.7967
18 6 4.9065 -11.1169 0.7180
19 6 3.5157 -11.3432 0.0752
20 6 2.6258 -10.2514 0.7046
21 1 1.9221 -9.8703 -0.0353
22 8 1.9173 -10.7835 1.8257
23 6 3.8700 -4.9153 -0.6218
24 6 5.0304 -5.4967 -1.3405
25 6 6.1240 -6.0127 -0.6394
26 6 7.1801 -6.5489 -1.3468
27 7 7.1708 -6.5688 -2.6661
28 6 6.1608 -6.0877 -3.3655
29 6 5.0624 -5.5381 -2.7372
30 7 3.2280 -3.8139 -0.9504
31 1 -0.4850 0.8400 0.0040
32 1 0.6241 -2.5613 0.8771
33 1 0.6247 -2.5525 -0.9029
34 1 1.5749 -4.7588 1.7142
35 1 4.7455 -6.7250 1.3696
36 1 3.1870 -6.7357 2.2294
37 1 2.2531 -7.8307 0.2532
38 1 5.2933 -9.1587 -0.1679
39 1 5.7040 -9.2721 1.5723
40 1 4.9481 -11.5577 1.7140
41 1 5.6957 -11.5196 0.0831
42 1 3.1369 -12.3344 0.3243
43 1 3.5677 -11.2164 -1.0062
44 1 1.3057 -11.4981 1.6013
45 1 6.1403 -5.9952 0.4404
46 1 8.0276 -6.9536 -0.8138
47 1 6.1948 -6.1238 -4.4444
48 1 4.2394 -5.1458 -3.3160
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001474170226.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:40:56
Heat of formation + Delta-G solvation = 32.382308 kcal
Electronic energy + Delta-G solvation = -29528.960238 eV
Core-core repulsion = 25583.859280 eV
Total energy + Delta-G solvation = -3945.100959 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-42.19595 -40.64781 -40.00941 -36.79665 -35.88403 -35.03294 -34.38341 -32.45817
-32.16170 -31.37374 -29.33573 -28.70633 -27.66327 -25.80204 -25.18615 -24.22614
-23.50010 -21.84389 -21.52974 -20.95797 -20.72456 -18.70387 -18.21998 -17.91968
-17.22805 -16.98165 -16.71280 -16.57889 -16.50872 -16.11361 -15.94872 -15.79278
-14.91691 -14.86145 -14.69855 -14.63796 -14.39934 -14.15736 -14.02294 -13.68344
-13.64304 -13.40265 -13.08627 -13.01368 -12.78388 -12.66638 -12.44611 -12.27765
-12.20327 -11.93172 -11.80677 -11.62004 -11.46378 -11.41054 -10.90716 -10.83937
-10.75639 -10.41015 -10.00123 -9.93795 -9.37204 -9.18754 -8.38511 -6.52466
0.11353 0.31435 1.13803 1.34677 1.36832 1.45296 1.75561 1.87628
2.30912 2.93850 3.01054 3.09608 3.46220 3.50071 3.65178 3.66691
3.84036 3.95778 4.07363 4.10244 4.20142 4.23846 4.26986 4.33254
4.46925 4.52106 4.57453 4.62326 4.66059 4.81583 4.82321 4.85963
4.90802 4.95259 5.01782 5.04759 5.08453 5.11586 5.16839 5.19603
5.26142 5.46123 5.51331 5.53575 5.70265 5.80644 5.82569 6.14120
6.23954 6.43032 6.58325 6.89656 6.92156 7.08927 7.17889 8.69398
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.011506 B = 0.003005 C = 0.002511
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2433.022730 B = 9314.360910 C =11148.019555
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.919 5.919
2 C 0.021 3.979
3 Si 0.968 3.032
4 H -0.272 1.272
5 H -0.268 1.268
6 H -0.275 1.275
7 C -0.550 4.550
8 H 0.051 0.949
9 C 0.272 3.728
10 N -0.345 5.345
11 C 0.050 3.950
12 C -0.232 4.232
13 C 0.152 3.848
14 N -0.675 5.675
15 C 0.089 3.911
16 H 0.048 0.952
17 C -0.108 4.108
18 C -0.118 4.118
19 C -0.147 4.147
20 C 0.097 3.903
21 H 0.059 0.941
22 O -0.583 6.583
23 C 0.091 3.909
24 C 0.046 3.954
25 C -0.144 4.144
26 C 0.101 3.899
27 N -0.503 5.503
28 C 0.099 3.901
29 C -0.165 4.165
30 N -0.313 5.313
31 H 0.273 0.727
32 H 0.056 0.944
33 H 0.020 0.980
34 H 0.193 0.807
35 H 0.085 0.915
36 H 0.043 0.957
37 H 0.337 0.663
38 H 0.069 0.931
39 H 0.070 0.930
40 H 0.068 0.932
41 H 0.075 0.925
42 H 0.082 0.918
43 H 0.073 0.927
44 H 0.394 0.606
45 H 0.146 0.854
46 H 0.187 0.813
47 H 0.178 0.822
48 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.763 -23.146 2.125 24.840
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.558 5.558
2 C -0.180 4.180
3 Si 0.792 3.208
4 H -0.196 1.196
5 H -0.193 1.193
6 H -0.201 1.201
7 C -0.588 4.588
8 H 0.069 0.931
9 C 0.154 3.846
10 N -0.125 5.125
11 C -0.098 4.098
12 C -0.245 4.245
13 C 0.023 3.977
14 N -0.307 5.307
15 C -0.021 4.021
16 H 0.066 0.934
17 C -0.146 4.146
18 C -0.156 4.156
19 C -0.185 4.185
20 C 0.038 3.962
21 H 0.077 0.923
22 O -0.391 6.391
23 C -0.073 4.073
24 C 0.036 3.964
25 C -0.165 4.165
26 C -0.055 4.055
27 N -0.213 5.213
28 C -0.057 4.057
29 C -0.186 4.186
30 N -0.137 5.137
31 H 0.082 0.918
32 H 0.074 0.926
33 H 0.038 0.962
34 H 0.210 0.790
35 H 0.103 0.897
36 H 0.061 0.939
37 H 0.156 0.844
38 H 0.088 0.912
39 H 0.088 0.912
40 H 0.087 0.913
41 H 0.094 0.906
42 H 0.100 0.900
43 H 0.092 0.908
44 H 0.244 0.756
45 H 0.164 0.836
46 H 0.204 0.796
47 H 0.195 0.805
48 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges 9.978 -21.810 0.805 23.997
hybrid contribution -2.100 0.743 1.258 2.558
sum 7.878 -21.067 2.062 22.587
Atomic orbital electron populations
1.69975 1.07172 1.28906 1.49717 1.25705 0.95823 1.02649 0.93795
0.85450 0.78371 0.78016 0.78932 1.19619 1.19301 1.20082 1.21343
0.93279 0.91027 1.53116 0.93116 1.19296 0.85761 0.81642 0.97938
1.49101 1.24001 1.19811 1.19563 1.22861 1.00612 0.89350 0.96984
1.19945 1.01501 1.02127 1.00901 1.20115 1.00654 0.84474 0.92451
1.60748 1.23351 1.00517 1.46076 1.22123 0.95354 0.88343 0.96269
0.93437 1.22365 0.94602 0.95582 1.02047 1.22429 0.96861 0.95366
1.00946 1.22971 0.96354 0.98764 1.00404 1.22566 0.92908 0.93581
0.87162 0.92324 1.86483 1.60361 1.57034 1.35226 1.20776 0.96723
0.93546 0.96228 1.18199 0.90970 0.94536 0.92744 1.22211 0.93214
0.99114 1.01926 1.23062 0.97708 0.95109 0.89622 1.67690 1.27429
1.16787 1.09355 1.22906 0.88201 0.93339 1.01293 1.22243 1.00806
1.01326 0.94202 1.77610 1.02201 1.18681 1.15234 0.91753 0.92574
0.96223 0.79047 0.89672 0.93935 0.84435 0.91215 0.91161 0.91348
0.90607 0.89956 0.90804 0.75618 0.83589 0.79649 0.80534 0.85857
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -51.96 13.29 21.45 0.28 -51.67 16
2 C 0.02 1.16 5.46 84.65 0.46 1.62 16
3 Si 0.97 43.71 29.54 68.60 2.03 45.73 16
4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16
5 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16
6 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16
7 C -0.55 -30.94 9.24 25.60 0.24 -30.71 16
8 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16
9 C 0.27 13.96 6.26 85.63 0.54 14.50 16
10 N -0.34 -15.59 3.67 -351.91 -1.29 -16.88 16
11 C 0.05 1.80 11.32 83.47 0.94 2.74 16
12 C -0.23 -7.49 5.58 -19.95 -0.11 -7.60 16
13 C 0.15 3.66 5.53 85.56 0.47 4.13 16
14 N -0.67 -15.01 6.27 -491.82 -3.08 -18.09 16
15 C 0.09 1.70 3.06 45.64 0.14 1.84 16
16 H 0.05 1.02 7.59 -2.38 -0.02 1.00 16
17 C -0.11 -1.81 6.49 31.67 0.21 -1.60 16
18 C -0.12 -1.65 6.91 31.89 0.22 -1.43 16
19 C -0.15 -2.00 6.56 31.67 0.21 -1.79 16
20 C 0.10 1.62 3.94 31.32 0.12 1.74 16
21 H 0.06 1.02 7.47 -2.39 -0.02 1.00 16
22 O -0.58 -9.79 13.21 -148.98 -1.97 -11.76 16
23 C 0.09 3.39 6.72 42.51 0.29 3.68 16
24 C 0.05 1.43 5.77 -19.84 -0.11 1.32 16
25 C -0.14 -3.59 9.02 22.58 0.20 -3.39 16
26 C 0.10 2.24 11.17 84.61 0.95 3.18 16
27 N -0.50 -12.74 10.35 -196.14 -2.03 -14.77 16
28 C 0.10 2.49 11.17 84.61 0.95 3.43 16
29 C -0.16 -4.92 9.89 22.58 0.22 -4.70 16
30 N -0.31 -14.36 12.45 -48.17 -0.60 -14.96 16
31 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16
32 H 0.06 2.81 8.07 -2.39 -0.02 2.79 16
33 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16
34 H 0.19 5.52 8.06 -2.91 -0.02 5.50 16
35 H 0.09 1.89 5.82 -2.39 -0.01 1.88 16
36 H 0.04 0.95 8.00 -2.38 -0.02 0.94 16
37 H 0.34 7.89 7.97 -89.69 -0.71 7.17 16
38 H 0.07 1.37 8.05 -2.39 -0.02 1.35 16
39 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16
40 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16
41 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16
42 H 0.08 0.88 8.06 -2.39 -0.02 0.86 16
43 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16
44 H 0.39 3.27 9.10 -74.06 -0.67 2.60 16
45 H 0.15 3.17 6.27 -2.91 -0.02 3.15 16
46 H 0.19 2.72 8.06 -2.91 -0.02 2.70 16
47 H 0.18 3.40 8.06 -2.91 -0.02 3.37 16
48 H 0.12 3.86 8.06 -2.91 -0.02 3.84 16
Total: -1.00 -68.21 399.64 -1.13 -69.34
By element:
Atomic # 1 Polarization: 26.49 SS G_CDS: -0.40 Total: 26.09 kcal
Atomic # 6 Polarization: -18.96 SS G_CDS: 5.93 Total: -13.03 kcal
Atomic # 7 Polarization: -109.65 SS G_CDS: -6.72 Total: -116.37 kcal
Atomic # 8 Polarization: -9.79 SS G_CDS: -1.97 Total: -11.76 kcal
Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal
Total: -68.21 -1.13 -69.34 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001474170226.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 101.723 kcal
(2) G-P(sol) polarization free energy of solvation -68.209 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.514 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.131 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.341 kcal
(6) G-S(sol) free energy of system = (1) + (5) 32.382 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds