Wall clock time and date at job start Sat Apr 11 2020 06:42:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31617 * 1
3 3 Si 1.86802 * 120.00124 * 2 1
4 4 H 1.48501 * 109.46827 * 269.99798 * 3 2 1
5 5 H 1.48500 * 109.47078 * 29.99380 * 3 2 1
6 6 H 1.48497 * 109.47245 * 149.99610 * 3 2 1
7 7 C 1.38813 * 120.00192 * 179.97438 * 2 1 3
8 8 H 1.08005 * 119.99432 * 0.02562 * 7 2 1
9 9 N 1.36935 * 120.00122 * 180.02562 * 7 2 1
10 10 C 1.46498 * 119.99592 * 179.97438 * 9 7 2
11 11 C 1.53005 * 109.46931 * 180.02562 * 10 9 7
12 12 H 1.09002 * 109.46924 * 55.00265 * 11 10 9
13 13 C 1.52996 * 109.47228 * 295.00242 * 11 10 9
14 14 C 1.52998 * 109.46955 * 179.97438 * 13 11 10
15 15 C 1.53002 * 109.46851 * 60.00583 * 14 13 11
16 16 C 1.52996 * 109.46865 * 299.99472 * 15 14 13
17 17 C 1.52995 * 109.47136 * 60.00270 * 16 15 14
18 18 H 1.09005 * 109.47189 * 179.97438 * 17 16 15
19 19 N 1.46506 * 109.47182 * 60.00005 * 17 16 15
20 20 C 1.34773 * 119.99969 * 84.72073 * 19 17 16
21 21 O 1.21586 * 120.00012 * 0.02562 * 20 19 17
22 22 C 1.47606 * 119.99776 * 180.02562 * 20 19 17
23 23 C 1.38555 * 119.74241 * 359.72870 * 22 20 19
24 24 N 1.33778 * 122.05616 * 179.69978 * 23 22 20
25 25 H 0.97000 * 119.63234 * 180.26839 * 24 23 22
26 26 C 1.37220 * 120.74126 * 0.57860 * 24 23 22
27 27 N 1.31993 * 134.47914 * 179.71841 * 26 24 23
28 28 C 1.33411 * 110.93942 * 180.02562 * 27 26 24
29 29 C 1.35794 * 110.88662 * 359.97438 * 28 27 26
30 30 C 1.41379 * 106.45097 * 0.02562 * 29 28 27
31 31 C 1.38756 * 135.64893 * 180.02562 * 30 29 28
32 32 H 0.97004 * 120.00164 * 0.02562 * 1 2 3
33 33 H 0.96997 * 119.99759 * 0.02562 * 9 7 2
34 34 H 1.09005 * 109.47254 * 60.00472 * 10 9 7
35 35 H 1.08997 * 109.47526 * 300.00373 * 10 9 7
36 36 H 1.09002 * 109.47186 * 299.99862 * 13 11 10
37 37 H 1.09001 * 109.46673 * 60.00043 * 13 11 10
38 38 H 1.09008 * 109.46760 * 179.97438 * 14 13 11
39 39 H 1.08992 * 109.47402 * 300.00139 * 14 13 11
40 40 H 1.08992 * 109.47480 * 59.99603 * 15 14 13
41 41 H 1.09008 * 109.46808 * 180.02562 * 15 14 13
42 42 H 1.09002 * 109.47614 * 299.99990 * 16 15 14
43 43 H 1.09007 * 109.47191 * 180.02562 * 16 15 14
44 44 H 0.97005 * 119.99811 * 265.00126 * 19 17 16
45 45 H 1.07998 * 118.97668 * 359.97438 * 23 22 20
46 46 H 1.07991 * 124.55800 * 180.02562 * 28 27 26
47 47 H 1.07999 * 126.76934 * 179.97438 * 29 28 27
48 48 H 1.08000 * 120.73541 * 0.02562 * 31 30 29
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4977 2.0463 -1.4001
5 1 1.4476 2.6527 0.6999
6 1 3.5477 1.4402 0.7001
7 6 2.0103 -1.2021 0.0005
8 1 1.4702 -2.1374 0.0005
9 7 3.3796 -1.2021 0.0011
10 6 4.1120 -2.4709 0.0022
11 6 5.6163 -2.1913 0.0032
12 1 5.8652 -1.5451 0.8450
13 6 6.0074 -1.4993 -1.3040
14 6 7.5115 -1.2192 -1.3027
15 6 8.2758 -2.5386 -1.1756
16 6 7.8847 -3.2306 0.1316
17 6 6.3806 -3.5106 0.1303
18 1 6.1021 -4.0041 1.0616
19 7 6.0466 -4.3795 -1.0010
20 6 6.1699 -5.7164 -0.8833
21 8 6.5579 -6.2014 0.1619
22 6 5.8339 -6.5916 -2.0234
23 6 5.3868 -6.0335 -3.2101
24 7 5.0751 -6.7824 -4.2739
25 1 4.7692 -6.3543 -5.0888
26 6 5.1773 -8.1498 -4.2233
27 7 4.9448 -9.1269 -5.0796
28 6 5.2058 -10.3144 -4.5305
29 6 5.6354 -10.1718 -3.2502
30 6 5.6412 -8.7837 -2.9821
31 6 5.9645 -7.9845 -1.8949
32 1 -0.4850 0.8401 -0.0004
33 1 3.8646 -0.3621 0.0014
34 1 3.8491 -3.0430 -0.8876
35 1 3.8483 -3.0419 0.8924
36 1 5.7585 -2.1456 -2.1458
37 1 5.4632 -0.5592 -1.3943
38 1 7.7902 -0.7266 -2.2343
39 1 7.7600 -0.5729 -0.4610
40 1 8.0273 -3.1850 -2.0173
41 1 9.3474 -2.3390 -1.1742
42 1 8.1332 -2.5843 0.9734
43 1 8.4295 -4.1704 0.2224
44 1 5.7406 -3.9922 -1.8361
45 1 5.2912 -4.9600 -3.2801
46 1 5.0917 -11.2617 -5.0364
47 1 5.9163 -10.9628 -2.5707
48 1 6.3092 -8.4234 -0.9703
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001483436728.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:42:22
Heat of formation + Delta-G solvation = 53.158337 kcal
Electronic energy + Delta-G solvation = -29796.858073 eV
Core-core repulsion = 25852.658030 eV
Total energy + Delta-G solvation = -3944.200042 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-41.80795 -40.48766 -38.71469 -37.99940 -34.95218 -34.12142 -33.92062 -32.07400
-30.74897 -30.17243 -29.17323 -29.05195 -25.62517 -24.46085 -24.13673 -22.89360
-22.32130 -21.69724 -20.91894 -20.56017 -19.27186 -18.36512 -17.74546 -17.67530
-16.84157 -16.71460 -15.85007 -15.65641 -15.33199 -15.12228 -14.84498 -14.55596
-14.24498 -14.17315 -13.94960 -13.57631 -13.43755 -13.07136 -12.87423 -12.69793
-12.65002 -12.39208 -12.24016 -12.06260 -11.91679 -11.72393 -11.19497 -11.09932
-11.02255 -10.90454 -10.62169 -10.36870 -10.21016 -10.13915 -10.03499 -9.72355
-9.65479 -9.16247 -8.96703 -8.45556 -8.04083 -7.31524 -5.84136 -3.20321
-0.09672 0.66041 1.95643 2.65205 2.90532 3.21859 3.29400 3.31229
3.37169 3.38689 3.75552 4.07601 4.19721 4.49670 4.51280 4.62289
4.66580 4.71297 4.80334 4.86163 4.98615 5.10627 5.32848 5.37821
5.39498 5.45383 5.46679 5.53128 5.57203 5.60813 5.61912 5.68504
5.70795 5.86778 5.94824 5.99044 6.04324 6.06675 6.13340 6.21625
6.23672 6.32589 6.38469 6.55227 6.58714 6.63376 6.86037 7.30250
7.81417 7.91593 8.01621 8.34623 9.13488 9.85530 10.04845 11.34234
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.011645 B = 0.002920 C = 0.002554
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2403.982553 B = 9585.379916 C =10960.465473
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.933 5.933
2 C 0.005 3.995
3 Si 0.884 3.116
4 H -0.284 1.284
5 H -0.291 1.291
6 H -0.277 1.277
7 C -0.246 4.246
8 H 0.089 0.911
9 N -0.754 5.754
10 C 0.164 3.836
11 C -0.108 4.108
12 H 0.087 0.913
13 C -0.112 4.112
14 C -0.123 4.123
15 C -0.116 4.116
16 C -0.129 4.129
17 C 0.157 3.843
18 H 0.094 0.906
19 N -0.714 5.714
20 C 0.576 3.424
21 O -0.534 6.534
22 C -0.230 4.230
23 C 0.183 3.817
24 N -0.485 5.485
25 H 0.429 0.571
26 C 0.243 3.757
27 N -0.529 5.529
28 C 0.052 3.948
29 C -0.220 4.220
30 C -0.170 4.170
31 C 0.085 3.915
32 H 0.260 0.740
33 H 0.361 0.639
34 H 0.024 0.976
35 H 0.028 0.972
36 H 0.056 0.944
37 H 0.073 0.927
38 H 0.060 0.940
39 H 0.063 0.937
40 H 0.058 0.942
41 H 0.058 0.942
42 H 0.073 0.927
43 H 0.067 0.933
44 H 0.395 0.605
45 H 0.180 0.820
46 H 0.160 0.840
47 H 0.140 0.860
48 H 0.151 0.849
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.373 -11.067 -7.366 22.678
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.581 5.581
2 C -0.191 4.191
3 Si 0.714 3.286
4 H -0.211 1.211
5 H -0.217 1.217
6 H -0.203 1.203
7 C -0.376 4.376
8 H 0.107 0.893
9 N -0.400 5.400
10 C 0.037 3.963
11 C -0.127 4.127
12 H 0.106 0.894
13 C -0.150 4.150
14 C -0.160 4.160
15 C -0.153 4.153
16 C -0.168 4.168
17 C 0.053 3.947
18 H 0.112 0.888
19 N -0.367 5.367
20 C 0.363 3.637
21 O -0.411 6.411
22 C -0.240 4.240
23 C 0.038 3.962
24 N -0.078 5.078
25 H 0.267 0.733
26 C -0.006 4.006
27 N -0.248 5.248
28 C -0.091 4.091
29 C -0.243 4.243
30 C -0.178 4.178
31 C 0.061 3.939
32 H 0.070 0.930
33 H 0.194 0.806
34 H 0.042 0.958
35 H 0.046 0.954
36 H 0.074 0.926
37 H 0.091 0.909
38 H 0.079 0.921
39 H 0.082 0.918
40 H 0.077 0.923
41 H 0.077 0.923
42 H 0.091 0.909
43 H 0.086 0.914
44 H 0.232 0.768
45 H 0.197 0.803
46 H 0.178 0.822
47 H 0.158 0.842
48 H 0.169 0.831
Dipole moment (debyes) X Y Z Total
from point charges 18.046 -11.521 -7.645 22.734
hybrid contribution 0.377 1.547 0.031 1.593
sum 18.423 -9.974 -7.614 22.290
Atomic orbital electron populations
1.69700 1.05135 1.25878 1.57379 1.24681 0.95216 0.97200 1.01990
0.86564 0.79256 0.85057 0.77722 1.21097 1.21707 1.20312 1.19039
0.80643 0.94681 1.43190 0.89317 1.42713 1.04004 1.02128 1.91171
1.20619 0.87720 0.89272 0.98685 1.21710 0.96541 0.95238 0.99197
0.89432 1.21554 0.95251 1.01340 0.96806 1.21606 0.95400 0.97179
1.01822 1.21490 0.99475 0.96609 0.97752 1.21920 0.95632 1.00971
0.98283 1.20975 0.94012 0.89950 0.89769 0.88846 1.46013 1.68040
1.05534 1.17075 1.17571 0.77546 0.81888 0.86701 1.90802 1.46786
1.74788 1.28767 1.19377 1.15152 0.94753 0.94738 1.22291 0.91167
0.96969 0.85803 1.40253 1.48358 1.04594 1.14554 0.73293 1.20456
1.02529 0.83480 0.94117 1.69526 1.25662 0.97493 1.32131 1.22357
0.99102 0.94724 0.92925 1.21433 1.10901 0.93210 0.98711 1.20128
1.08822 0.95150 0.93745 1.21421 0.84413 0.90827 0.97236 0.93001
0.80620 0.95777 0.95443 0.92559 0.90856 0.92145 0.91818 0.92307
0.92284 0.90866 0.91399 0.76825 0.80340 0.82250 0.84227 0.83132
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -28.63 13.97 55.49 0.78 -27.85 16
2 C 0.01 0.14 5.50 -17.43 -0.10 0.05 16
3 Si 0.88 21.14 27.74 -169.99 -4.71 16.42 16
4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16
5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16
6 H -0.28 -6.17 6.52 56.52 0.37 -5.80 16
7 C -0.25 -6.64 10.47 -15.06 -0.16 -6.80 16
8 H 0.09 2.60 8.06 -52.48 -0.42 2.18 16
9 N -0.75 -16.41 5.13 -59.91 -0.31 -16.72 16
10 C 0.16 2.78 5.42 -4.04 -0.02 2.76 16
11 C -0.11 -1.33 2.02 -90.62 -0.18 -1.52 16
12 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16
13 C -0.11 -1.22 4.90 -26.73 -0.13 -1.35 16
14 C -0.12 -1.10 5.92 -26.73 -0.16 -1.25 16
15 C -0.12 -0.95 5.77 -26.73 -0.15 -1.10 16
16 C -0.13 -1.22 5.60 -26.74 -0.15 -1.37 16
17 C 0.16 1.70 2.23 -67.93 -0.15 1.55 16
18 H 0.09 1.19 7.58 -51.93 -0.39 0.79 16
19 N -0.71 -6.74 3.56 -54.82 -0.20 -6.94 16
20 C 0.58 6.33 7.72 -12.44 -0.10 6.23 16
21 O -0.53 -7.71 16.01 5.29 0.08 -7.62 16
22 C -0.23 -2.13 5.86 -105.11 -0.62 -2.75 16
23 C 0.18 1.18 10.64 -16.59 -0.18 1.00 16
24 N -0.49 -3.52 5.27 -10.38 -0.05 -3.58 16
25 H 0.43 1.84 8.91 -40.82 -0.36 1.48 16
26 C 0.24 2.79 8.64 -153.92 -1.33 1.46 16
27 N -0.53 -6.98 11.16 -11.09 -0.12 -7.10 16
28 C 0.05 0.61 11.69 -17.74 -0.21 0.41 16
29 C -0.22 -2.49 10.99 -39.26 -0.43 -2.92 16
30 C -0.17 -1.98 6.41 -105.01 -0.67 -2.66 16
31 C 0.08 0.89 9.71 -38.54 -0.37 0.51 16
32 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16
33 H 0.36 7.62 4.71 -40.82 -0.19 7.43 16
34 H 0.02 0.40 7.61 -51.93 -0.40 0.00 16
35 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16
36 H 0.06 0.52 6.51 -51.93 -0.34 0.19 16
37 H 0.07 0.96 7.18 -51.93 -0.37 0.59 16
38 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16
39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
40 H 0.06 0.45 7.60 -51.93 -0.39 0.05 16
41 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16
42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
43 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16
44 H 0.40 2.90 4.61 -40.82 -0.19 2.71 16
45 H 0.18 0.50 6.25 -52.49 -0.33 0.17 16
46 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16
47 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16
48 H 0.15 1.50 7.67 -52.49 -0.40 1.10 16
LS Contribution 381.18 15.07 5.74 5.74
Total: -1.00 -36.17 381.18 -10.66 -46.84
By element:
Atomic # 1 Polarization: 15.32 SS G_CDS: -6.77 Total: 8.55 kcal
Atomic # 6 Polarization: -2.64 SS G_CDS: -5.11 Total: -7.74 kcal
Atomic # 7 Polarization: -62.29 SS G_CDS: 0.09 Total: -62.19 kcal
Atomic # 8 Polarization: -7.71 SS G_CDS: 0.08 Total: -7.62 kcal
Atomic # 14 Polarization: 21.14 SS G_CDS: -4.71 Total: 16.42 kcal
Total LS contribution 5.74 Total: 5.74 kcal
Total: -36.17 -10.66 -46.84 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001483436728.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 99.993 kcal
(2) G-P(sol) polarization free energy of solvation -36.170 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.823 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.665 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.835 kcal
(6) G-S(sol) free energy of system = (1) + (5) 53.158 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds