Wall clock time and date at job start Sat Apr 11 2020 06:42:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31617 * 1
3 3 Si 1.86802 * 120.00124 * 2 1
4 4 H 1.48501 * 109.46827 * 269.99798 * 3 2 1
5 5 H 1.48500 * 109.47078 * 29.99380 * 3 2 1
6 6 H 1.48497 * 109.47245 * 149.99610 * 3 2 1
7 7 C 1.38813 * 120.00192 * 179.97438 * 2 1 3
8 8 H 1.08005 * 119.99432 * 0.02562 * 7 2 1
9 9 N 1.36935 * 120.00122 * 180.02562 * 7 2 1
10 10 C 1.46498 * 119.99592 * 179.97438 * 9 7 2
11 11 C 1.53005 * 109.46931 * 180.02562 * 10 9 7
12 12 H 1.09002 * 109.46924 * 55.00265 * 11 10 9
13 13 C 1.52996 * 109.47228 * 295.00242 * 11 10 9
14 14 C 1.52998 * 109.46955 * 179.97438 * 13 11 10
15 15 C 1.53002 * 109.46851 * 60.00583 * 14 13 11
16 16 C 1.52996 * 109.46865 * 299.99472 * 15 14 13
17 17 C 1.52995 * 109.47136 * 60.00270 * 16 15 14
18 18 H 1.09005 * 109.47189 * 179.97438 * 17 16 15
19 19 N 1.46506 * 109.47182 * 60.00005 * 17 16 15
20 20 C 1.34773 * 119.99969 * 84.72073 * 19 17 16
21 21 O 1.21586 * 120.00012 * 0.02562 * 20 19 17
22 22 C 1.47606 * 119.99776 * 180.02562 * 20 19 17
23 23 C 1.38555 * 119.74241 * 359.72870 * 22 20 19
24 24 N 1.33778 * 122.05616 * 179.69978 * 23 22 20
25 25 H 0.97000 * 119.63234 * 180.26839 * 24 23 22
26 26 C 1.37220 * 120.74126 * 0.57860 * 24 23 22
27 27 N 1.31993 * 134.47914 * 179.71841 * 26 24 23
28 28 C 1.33411 * 110.93942 * 180.02562 * 27 26 24
29 29 C 1.35794 * 110.88662 * 359.97438 * 28 27 26
30 30 C 1.41379 * 106.45097 * 0.02562 * 29 28 27
31 31 C 1.38756 * 135.64893 * 180.02562 * 30 29 28
32 32 H 0.97004 * 120.00164 * 0.02562 * 1 2 3
33 33 H 0.96997 * 119.99759 * 0.02562 * 9 7 2
34 34 H 1.09005 * 109.47254 * 60.00472 * 10 9 7
35 35 H 1.08997 * 109.47526 * 300.00373 * 10 9 7
36 36 H 1.09002 * 109.47186 * 299.99862 * 13 11 10
37 37 H 1.09001 * 109.46673 * 60.00043 * 13 11 10
38 38 H 1.09008 * 109.46760 * 179.97438 * 14 13 11
39 39 H 1.08992 * 109.47402 * 300.00139 * 14 13 11
40 40 H 1.08992 * 109.47480 * 59.99603 * 15 14 13
41 41 H 1.09008 * 109.46808 * 180.02562 * 15 14 13
42 42 H 1.09002 * 109.47614 * 299.99990 * 16 15 14
43 43 H 1.09007 * 109.47191 * 180.02562 * 16 15 14
44 44 H 0.97005 * 119.99811 * 265.00126 * 19 17 16
45 45 H 1.07998 * 118.97668 * 359.97438 * 23 22 20
46 46 H 1.07991 * 124.55800 * 180.02562 * 28 27 26
47 47 H 1.07999 * 126.76934 * 179.97438 * 29 28 27
48 48 H 1.08000 * 120.73541 * 0.02562 * 31 30 29
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4977 2.0463 -1.4001
5 1 1.4476 2.6527 0.6999
6 1 3.5477 1.4402 0.7001
7 6 2.0103 -1.2021 0.0005
8 1 1.4702 -2.1374 0.0005
9 7 3.3796 -1.2021 0.0011
10 6 4.1120 -2.4709 0.0022
11 6 5.6163 -2.1913 0.0032
12 1 5.8652 -1.5451 0.8450
13 6 6.0074 -1.4993 -1.3040
14 6 7.5115 -1.2192 -1.3027
15 6 8.2758 -2.5386 -1.1756
16 6 7.8847 -3.2306 0.1316
17 6 6.3806 -3.5106 0.1303
18 1 6.1021 -4.0041 1.0616
19 7 6.0466 -4.3795 -1.0010
20 6 6.1699 -5.7164 -0.8833
21 8 6.5579 -6.2014 0.1619
22 6 5.8339 -6.5916 -2.0234
23 6 5.3868 -6.0335 -3.2101
24 7 5.0751 -6.7824 -4.2739
25 1 4.7692 -6.3543 -5.0888
26 6 5.1773 -8.1498 -4.2233
27 7 4.9448 -9.1269 -5.0796
28 6 5.2058 -10.3144 -4.5305
29 6 5.6354 -10.1718 -3.2502
30 6 5.6412 -8.7837 -2.9821
31 6 5.9645 -7.9845 -1.8949
32 1 -0.4850 0.8401 -0.0004
33 1 3.8646 -0.3621 0.0014
34 1 3.8491 -3.0430 -0.8876
35 1 3.8483 -3.0419 0.8924
36 1 5.7585 -2.1456 -2.1458
37 1 5.4632 -0.5592 -1.3943
38 1 7.7902 -0.7266 -2.2343
39 1 7.7600 -0.5729 -0.4610
40 1 8.0273 -3.1850 -2.0173
41 1 9.3474 -2.3390 -1.1742
42 1 8.1332 -2.5843 0.9734
43 1 8.4295 -4.1704 0.2224
44 1 5.7406 -3.9922 -1.8361
45 1 5.2912 -4.9600 -3.2801
46 1 5.0917 -11.2617 -5.0364
47 1 5.9163 -10.9628 -2.5707
48 1 6.3092 -8.4234 -0.9703
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001483436728.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:42:21
Heat of formation + Delta-G solvation = 29.423093 kcal
Electronic energy + Delta-G solvation = -29797.887310 eV
Core-core repulsion = 25852.658030 eV
Total energy + Delta-G solvation = -3945.229280 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-42.57395 -41.37818 -39.57905 -38.83635 -36.58116 -34.94014 -34.72968 -33.83254
-31.65874 -31.50162 -30.02804 -29.84719 -27.06308 -25.19682 -24.95641 -24.34448
-23.29302 -22.48209 -22.05276 -21.49727 -20.12511 -19.73121 -19.04261 -18.47252
-17.65171 -17.45695 -16.79822 -16.52712 -16.47638 -16.27523 -15.83434 -15.71799
-15.50890 -15.12267 -14.97017 -14.77264 -14.57166 -14.23052 -14.05120 -13.77376
-13.47757 -13.45791 -13.10969 -13.01846 -12.88307 -12.82357 -12.69847 -12.54128
-12.09741 -11.89434 -11.83114 -11.82594 -11.38184 -11.19852 -11.12137 -10.99878
-10.84943 -10.59456 -10.04632 -9.26847 -9.23384 -8.87326 -8.00871 -5.34151
-0.82471 -0.08473 1.30505 1.39224 1.43389 1.50975 1.79325 2.06923
2.36875 2.50301 2.56615 3.14858 3.30932 3.35658 3.48373 3.51083
3.79106 3.81940 3.87692 3.99871 4.07594 4.13268 4.27635 4.36440
4.49464 4.52147 4.61010 4.62437 4.72713 4.77733 4.80074 4.88817
4.94940 4.97312 5.06983 5.13681 5.22438 5.27217 5.31279 5.34479
5.38556 5.47747 5.54462 5.59257 5.64452 5.77692 5.77950 6.08210
6.22927 6.50863 6.99429 7.10882 7.18606 7.86980 8.06290 9.20865
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.011645 B = 0.002920 C = 0.002554
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2403.982553 B = 9585.379916 C =10960.465473
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.987 5.987
2 C -0.066 4.066
3 Si 0.955 3.045
4 H -0.273 1.273
5 H -0.302 1.302
6 H -0.249 1.249
7 C -0.232 4.232
8 H 0.052 0.948
9 N -0.753 5.753
10 C 0.161 3.839
11 C -0.094 4.094
12 H 0.084 0.916
13 C -0.112 4.112
14 C -0.116 4.116
15 C -0.110 4.110
16 C -0.124 4.124
17 C 0.164 3.836
18 H 0.071 0.929
19 N -0.704 5.704
20 C 0.581 3.419
21 O -0.573 6.573
22 C -0.247 4.247
23 C 0.218 3.782
24 N -0.469 5.469
25 H 0.446 0.554
26 C 0.225 3.775
27 N -0.556 5.556
28 C 0.027 3.973
29 C -0.228 4.228
30 C -0.200 4.200
31 C 0.089 3.911
32 H 0.257 0.743
33 H 0.367 0.633
34 H 0.036 0.964
35 H 0.007 0.993
36 H 0.076 0.924
37 H 0.055 0.945
38 H 0.075 0.925
39 H 0.061 0.939
40 H 0.070 0.930
41 H 0.070 0.930
42 H 0.076 0.924
43 H 0.059 0.941
44 H 0.408 0.592
45 H 0.226 0.774
46 H 0.176 0.824
47 H 0.153 0.847
48 H 0.148 0.852
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 20.876 -9.222 -8.663 24.411
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.637 5.637
2 C -0.257 4.257
3 Si 0.782 3.218
4 H -0.198 1.198
5 H -0.229 1.229
6 H -0.173 1.173
7 C -0.363 4.363
8 H 0.070 0.930
9 N -0.399 5.399
10 C 0.035 3.965
11 C -0.113 4.113
12 H 0.102 0.898
13 C -0.150 4.150
14 C -0.153 4.153
15 C -0.148 4.148
16 C -0.162 4.162
17 C 0.059 3.941
18 H 0.089 0.911
19 N -0.357 5.357
20 C 0.369 3.631
21 O -0.453 6.453
22 C -0.256 4.256
23 C 0.071 3.929
24 N -0.063 5.063
25 H 0.287 0.713
26 C -0.023 4.023
27 N -0.276 5.276
28 C -0.115 4.115
29 C -0.250 4.250
30 C -0.208 4.208
31 C 0.065 3.935
32 H 0.066 0.934
33 H 0.201 0.799
34 H 0.054 0.946
35 H 0.025 0.975
36 H 0.095 0.905
37 H 0.073 0.927
38 H 0.094 0.906
39 H 0.079 0.921
40 H 0.088 0.912
41 H 0.089 0.911
42 H 0.095 0.905
43 H 0.078 0.922
44 H 0.247 0.753
45 H 0.242 0.758
46 H 0.194 0.806
47 H 0.171 0.829
48 H 0.165 0.835
Dipole moment (debyes) X Y Z Total
from point charges 20.595 -9.695 -8.991 24.474
hybrid contribution -0.439 0.929 0.505 1.145
sum 20.156 -8.765 -8.486 23.561
Atomic orbital electron populations
1.69898 1.07349 1.26667 1.59832 1.25534 0.96054 1.01397 1.02713
0.85408 0.78653 0.79372 0.78338 1.19836 1.22941 1.17339 1.19002
0.82946 0.93213 1.41110 0.92958 1.42679 1.02202 1.04215 1.90852
1.20793 0.90467 0.87180 0.98087 1.21547 0.93081 0.96195 1.00482
0.89777 1.21572 0.96670 1.00580 0.96170 1.21552 0.93627 0.97565
1.02584 1.21471 1.00092 0.96191 0.97040 1.21857 0.93865 1.00902
0.99585 1.20803 0.95027 0.88931 0.89354 0.91122 1.45866 1.67577
1.04974 1.17241 1.17700 0.76782 0.82173 0.86472 1.90791 1.48660
1.75462 1.30410 1.19228 1.16949 0.93967 0.95479 1.22873 0.87313
0.98542 0.84171 1.40332 1.47200 1.03290 1.15469 0.71256 1.20627
1.03022 0.84818 0.93870 1.69468 1.26687 0.98349 1.33106 1.22690
1.00109 0.95239 0.93489 1.21705 1.10575 0.93807 0.98915 1.20268
1.10562 0.95559 0.94409 1.21483 0.83640 0.91563 0.96808 0.93437
0.79869 0.94596 0.97467 0.90538 0.92662 0.90624 0.92069 0.91165
0.91129 0.90504 0.92189 0.75310 0.75820 0.80642 0.82908 0.83452
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.99 -61.84 13.97 21.65 0.30 -61.54 16
2 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16
3 Si 0.96 42.95 27.74 68.60 1.90 44.85 16
4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16
5 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16
6 H -0.25 -9.90 6.52 99.48 0.65 -9.25 16
7 C -0.23 -12.55 10.47 84.03 0.88 -11.67 16
8 H 0.05 3.16 8.06 -2.91 -0.02 3.14 16
9 N -0.75 -31.64 5.13 -343.44 -1.76 -33.41 16
10 C 0.16 5.20 5.42 86.38 0.47 5.67 16
11 C -0.09 -2.09 2.02 -10.79 -0.02 -2.11 16
12 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16
13 C -0.11 -2.01 4.90 30.59 0.15 -1.86 16
14 C -0.12 -1.56 5.92 30.59 0.18 -1.38 16
15 C -0.11 -1.34 5.77 30.59 0.18 -1.16 16
16 C -0.12 -1.99 5.60 30.59 0.17 -1.82 16
17 C 0.16 3.21 2.23 44.99 0.10 3.31 16
18 H 0.07 1.75 7.58 -2.38 -0.02 1.73 16
19 N -0.70 -11.32 3.56 -445.63 -1.59 -12.91 16
20 C 0.58 11.76 7.72 86.72 0.67 12.42 16
21 O -0.57 -16.31 16.01 -3.99 -0.06 -16.37 16
22 C -0.25 -4.09 5.86 -20.18 -0.12 -4.21 16
23 C 0.22 2.04 10.64 84.47 0.90 2.94 16
24 N -0.47 -5.58 5.27 -186.74 -0.98 -6.56 16
25 H 0.45 2.39 8.91 -92.71 -0.83 1.57 16
26 C 0.22 4.96 8.64 135.83 1.17 6.14 16
27 N -0.56 -14.63 11.16 -188.98 -2.11 -16.74 16
28 C 0.03 0.66 11.69 83.89 0.98 1.64 16
29 C -0.23 -5.24 10.99 22.48 0.25 -5.00 16
30 C -0.20 -4.63 6.41 -20.12 -0.13 -4.76 16
31 C 0.09 1.83 9.71 22.94 0.22 2.05 16
32 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16
33 H 0.37 14.53 4.71 -92.71 -0.44 14.10 16
34 H 0.04 1.09 7.61 -2.38 -0.02 1.07 16
35 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16
36 H 0.08 1.04 6.51 -2.39 -0.02 1.02 16
37 H 0.05 1.24 7.18 -2.39 -0.02 1.22 16
38 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16
39 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16
40 H 0.07 0.71 7.60 -2.39 -0.02 0.70 16
41 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16
42 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16
43 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16
44 H 0.41 4.21 4.61 -92.70 -0.43 3.78 16
45 H 0.23 -0.03 6.25 -2.91 -0.02 -0.05 16
46 H 0.18 3.24 8.06 -2.92 -0.02 3.22 16
47 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16
48 H 0.15 3.01 7.67 -2.91 -0.02 2.99 16
Total: -1.00 -82.05 381.18 1.48 -80.56
By element:
Atomic # 1 Polarization: 25.90 SS G_CDS: -0.73 Total: 25.16 kcal
Atomic # 6 Polarization: -9.56 SS G_CDS: 6.52 Total: -3.05 kcal
Atomic # 7 Polarization: -125.02 SS G_CDS: -6.14 Total: -131.16 kcal
Atomic # 8 Polarization: -16.31 SS G_CDS: -0.06 Total: -16.37 kcal
Atomic # 14 Polarization: 42.95 SS G_CDS: 1.90 Total: 44.85 kcal
Total: -82.05 1.48 -80.56 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001483436728.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 109.988 kcal
(2) G-P(sol) polarization free energy of solvation -82.045 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.943 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.481 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.565 kcal
(6) G-S(sol) free energy of system = (1) + (5) 29.423 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds