Wall clock time and date at job start Sat Apr 11 2020 06:40:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.35821 * 118.70405 * 2 1
4 4 C 1.40841 * 120.55895 * 180.25386 * 3 2 1
5 5 C 1.38426 * 134.89530 * 180.43716 * 4 3 2
6 6 N 1.33895 * 107.84275 * 179.52574 * 5 4 3
7 7 H 0.97002 * 125.01827 * 179.70828 * 6 5 4
8 8 N 1.39973 * 109.96231 * 359.73992 * 6 5 4
9 9 C 1.31476 * 109.01920 * 0.02562 * 8 6 5
10 10 C 1.46669 * 134.99582 * 179.97438 * 9 8 6
11 11 C 1.47170 * 120.72249 * 359.97438 * 10 9 8
12 12 O 1.21644 * 119.99851 * 313.76267 * 11 10 9
13 13 N 1.34776 * 120.00278 * 133.76501 * 11 10 9
14 14 C 1.47020 * 125.64559 * 4.85597 * 13 11 10
15 15 C 1.54326 * 107.27211 * 181.01994 * 14 13 11
16 16 H 1.09002 * 110.72185 * 140.55058 * 15 14 13
17 17 N 1.46496 * 110.72377 * 263.65631 * 15 14 13
18 18 C 1.36936 * 119.99695 * 273.54265 * 17 15 14
19 19 H 1.08001 * 119.99972 * 0.02562 * 18 17 15
20 20 C 1.38813 * 119.99852 * 179.97438 * 18 17 15
21 21 N 1.31618 * 119.99987 * 359.97438 * 20 18 17
22 22 Si 1.86803 * 119.99735 * 180.02562 * 20 18 17
23 23 H 1.48494 * 109.47558 * 359.97438 * 22 20 18
24 24 H 1.48506 * 109.46916 * 120.00036 * 22 20 18
25 25 H 1.48500 * 109.46856 * 239.99586 * 22 20 18
26 26 C 1.55157 * 102.93802 * 22.19682 * 15 14 13
27 27 C 1.52997 * 111.00820 * 82.57128 * 26 15 14
28 28 C 1.53004 * 111.00662 * 206.38625 * 26 15 14
29 29 C 1.47415 * 125.64843 * 184.54747 * 13 11 10
30 30 C 1.38591 * 118.55021 * 179.97438 * 10 9 8
31 31 H 1.08997 * 109.47396 * 90.00299 * 1 2 3
32 32 H 1.09007 * 109.47404 * 210.00151 * 1 2 3
33 33 H 1.09002 * 109.47379 * 329.99784 * 1 2 3
34 34 H 1.08005 * 119.71979 * 359.97438 * 3 2 1
35 35 H 1.07996 * 126.07757 * 359.26514 * 5 4 3
36 36 H 1.09003 * 109.88658 * 300.43973 * 14 13 11
37 37 H 1.09003 * 109.88495 * 61.45577 * 14 13 11
38 38 H 0.96998 * 120.00206 * 93.53739 * 17 15 14
39 39 H 0.97002 * 119.99612 * 180.02562 * 21 20 18
40 40 H 1.09001 * 109.47399 * 60.00072 * 27 26 15
41 41 H 1.08999 * 109.47568 * 180.02562 * 27 26 15
42 42 H 1.08997 * 109.47025 * 299.99690 * 27 26 15
43 43 H 1.09001 * 109.46700 * 59.99324 * 28 26 15
44 44 H 1.08999 * 109.47571 * 179.97438 * 28 26 15
45 45 H 1.08999 * 109.46501 * 300.00085 * 28 26 15
46 46 H 1.09002 * 110.37094 * 274.74743 * 29 13 11
47 47 H 1.09002 * 110.36894 * 37.07257 * 29 13 11
48 48 H 1.07999 * 119.31426 * 179.97438 * 30 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1593 1.1913 0.0000
4 6 3.5670 1.2369 -0.0054
5 6 4.5118 2.2486 0.0006
6 7 5.7233 1.6785 0.0006
7 1 6.5652 2.1603 0.0001
8 7 5.5955 0.2846 0.0006
9 6 4.3186 -0.0286 0.0000
10 6 3.5585 -1.2830 -0.0007
11 6 4.2509 -2.5816 -0.0015
12 8 5.1800 -2.7751 -0.7626
13 7 3.8556 -3.5567 0.8408
14 6 2.6915 -3.4951 1.7367
15 6 2.6486 -4.8217 2.5241
16 1 2.3618 -4.6457 3.5609
17 7 1.7325 -5.7721 1.8889
18 6 0.3986 -5.7479 2.1975
19 1 0.0219 -5.0278 2.9089
20 6 -0.4696 -6.6482 1.5953
21 7 -0.0107 -7.5247 0.7272
22 14 -2.2893 -6.6146 2.0158
23 1 -2.5478 -5.5432 3.0110
24 1 -3.0769 -6.3484 0.7852
25 1 -2.6899 -7.9261 2.5857
26 6 4.1140 -5.3244 2.4378
27 6 4.9870 -4.6550 3.5011
28 6 4.1791 -6.8482 2.5589
29 6 4.5151 -4.8640 1.0117
30 6 2.1741 -1.2186 -0.0006
31 1 -0.3634 -0.0001 -1.0276
32 1 -0.3634 -0.8900 0.5139
33 1 -0.3634 0.8900 0.5139
34 1 1.5938 2.1115 -0.0004
35 1 4.3079 3.3091 0.0006
36 1 2.7984 -2.6579 2.4265
37 1 1.7791 -3.3791 1.1516
38 1 2.0708 -6.4186 1.2497
39 1 -0.6175 -8.1535 0.3061
40 1 4.5956 -4.8873 4.4916
41 1 6.0089 -5.0250 3.4180
42 1 4.9786 -3.5754 3.3511
43 1 3.6058 -7.3017 1.7503
44 1 5.2173 -7.1738 2.4948
45 1 3.7603 -7.1547 3.5175
46 1 4.1531 -5.5719 0.2662
47 1 5.5972 -4.7554 0.9390
48 1 1.6022 -2.1347 -0.0015
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000996414864.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:40:44
Heat of formation + Delta-G solvation = 77.142226 kcal
Electronic energy + Delta-G solvation = -30571.129881 eV
Core-core repulsion = 26627.969858 eV
Total energy + Delta-G solvation = -3943.160023 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-41.34700 -39.88401 -37.93333 -37.20766 -33.88650 -33.23809 -32.45076 -31.19695
-30.73320 -30.17479 -27.89129 -26.71513 -26.59827 -26.12561 -24.41209 -23.60614
-21.87704 -21.28564 -21.01880 -18.91722 -18.65236 -18.10986 -17.23941 -17.09961
-16.24973 -15.62667 -15.27960 -14.97017 -14.86890 -14.59786 -14.35446 -14.05307
-13.79204 -13.50279 -13.36410 -13.27323 -12.96583 -12.63902 -12.43828 -12.20115
-12.09000 -11.91819 -11.76687 -11.71451 -11.50837 -11.29082 -11.24684 -10.97353
-10.91615 -10.63084 -10.53145 -10.36758 -10.27391 -10.19366 -9.79049 -9.64549
-9.46557 -8.99250 -8.83945 -8.12476 -7.59456 -7.04000 -5.82321 -3.12089
0.34589 1.73915 2.17378 2.50924 3.08654 3.37975 3.39893 3.45797
3.48293 3.80989 4.12043 4.39815 4.53201 4.71729 4.88149 4.95612
5.05505 5.15717 5.23250 5.28126 5.31863 5.49143 5.51481 5.52054
5.65919 5.69755 5.77896 5.81273 5.93983 5.97424 6.01639 6.06998
6.18962 6.22021 6.27727 6.27851 6.28209 6.34738 6.42944 6.46272
6.57347 6.63952 6.74230 6.79807 6.84049 6.89408 6.96729 7.48444
7.65945 7.98671 8.35484 8.57365 9.47581 10.02993 10.38133 11.39820
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.011165 B = 0.003855 C = 0.003080
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2507.312354 B = 7261.433757 C = 9089.175188
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.113 4.113
2 C -0.122 4.122
3 C -0.032 4.032
4 C -0.208 4.208
5 C 0.082 3.918
6 N -0.432 5.432
7 H 0.443 0.557
8 N -0.284 5.284
9 C 0.134 3.866
10 C -0.102 4.102
11 C 0.576 3.424
12 O -0.540 6.540
13 N -0.600 5.600
14 C 0.070 3.930
15 C 0.179 3.821
16 H 0.070 0.930
17 N -0.712 5.712
18 C -0.245 4.245
19 H 0.073 0.927
20 C -0.008 4.008
21 N -0.928 5.928
22 Si 0.905 3.095
23 H -0.280 1.280
24 H -0.292 1.292
25 H -0.292 1.292
26 C -0.089 4.089
27 C -0.129 4.129
28 C -0.125 4.125
29 C 0.123 3.877
30 C -0.032 4.032
31 H 0.068 0.932
32 H 0.072 0.928
33 H 0.064 0.936
34 H 0.125 0.875
35 H 0.189 0.811
36 H 0.054 0.946
37 H 0.079 0.921
38 H 0.387 0.613
39 H 0.255 0.745
40 H 0.058 0.942
41 H 0.052 0.948
42 H 0.052 0.948
43 H 0.069 0.931
44 H 0.044 0.956
45 H 0.060 0.940
46 H 0.070 0.930
47 H 0.069 0.931
48 H 0.144 0.856
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.218 19.304 2.038 20.710
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C -0.124 4.124
3 C -0.052 4.052
4 C -0.219 4.219
5 C -0.075 4.075
6 N -0.132 5.132
7 H 0.287 0.713
8 N -0.110 5.110
9 C -0.023 4.023
10 C -0.108 4.108
11 C 0.365 3.635
12 O -0.419 6.419
13 N -0.332 5.332
14 C -0.056 4.056
15 C 0.067 3.933
16 H 0.087 0.913
17 N -0.353 5.353
18 C -0.376 4.376
19 H 0.090 0.910
20 C -0.204 4.204
21 N -0.576 5.576
22 Si 0.736 3.264
23 H -0.205 1.205
24 H -0.219 1.219
25 H -0.219 1.219
26 C -0.091 4.091
27 C -0.187 4.187
28 C -0.182 4.182
29 C 0.000 4.000
30 C -0.054 4.054
31 H 0.087 0.913
32 H 0.091 0.909
33 H 0.083 0.917
34 H 0.143 0.857
35 H 0.205 0.795
36 H 0.073 0.927
37 H 0.097 0.903
38 H 0.223 0.777
39 H 0.065 0.935
40 H 0.077 0.923
41 H 0.071 0.929
42 H 0.071 0.929
43 H 0.088 0.912
44 H 0.063 0.937
45 H 0.079 0.921
46 H 0.088 0.912
47 H 0.087 0.913
48 H 0.161 0.839
Dipole moment (debyes) X Y Z Total
from point charges 8.782 18.768 1.652 20.787
hybrid contribution -1.349 0.536 -0.133 1.457
sum 7.433 19.304 1.518 20.741
Atomic orbital electron populations
1.20820 0.90593 1.03127 1.02403 1.19126 0.96523 0.92181 1.04531
1.20052 0.90718 0.97610 0.96844 1.19525 0.94817 0.91467 1.16053
1.22675 0.85153 0.98908 1.00743 1.46412 1.08016 1.06028 1.52762
0.71302 1.77689 1.17004 0.87920 1.28434 1.21493 0.90033 0.93081
0.97724 1.19698 0.92203 0.89438 1.09497 1.17552 0.83110 0.82813
0.80039 1.90783 1.29935 1.81611 1.39530 1.48291 1.29612 1.15439
1.39894 1.23405 0.87998 1.01134 0.93029 1.21219 0.88440 0.88115
0.95539 0.91264 1.42462 1.04215 1.38036 1.50619 1.19262 0.83844
1.14120 1.20324 0.90951 1.24733 0.98023 0.98388 0.99300 1.69668
1.34129 1.22247 1.31518 0.86163 0.85531 0.77268 0.77463 1.20482
1.21880 1.21914 1.22047 0.96566 0.96633 0.93810 1.21671 0.98758
1.00214 0.98035 1.21572 1.00348 0.92996 1.03319 1.22307 0.97209
0.84003 0.96458 1.21429 0.92204 0.98767 0.93001 0.91328 0.90904
0.91710 0.85749 0.79458 0.92736 0.90309 0.77726 0.93458 0.92342
0.92853 0.92873 0.91198 0.93650 0.92107 0.91166 0.91293 0.83894
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.12 9.93 36.00 0.36 -0.77 16
2 C -0.12 -1.50 5.82 -105.23 -0.61 -2.11 16
3 C -0.03 -0.35 9.58 -39.46 -0.38 -0.73 16
4 C -0.21 -2.54 6.34 -105.21 -0.67 -3.21 16
5 C 0.08 0.68 12.08 -16.58 -0.20 0.48 16
6 N -0.43 -4.22 7.18 30.86 0.22 -3.99 16
7 H 0.44 2.46 8.96 -182.69 -1.64 0.82 16
8 N -0.28 -4.50 12.67 34.35 0.44 -4.06 16
9 C 0.13 2.18 7.44 -80.98 -0.60 1.58 16
10 C -0.10 -1.76 5.60 -102.74 -0.58 -2.34 16
11 C 0.58 11.37 7.44 -12.63 -0.09 11.28 16
12 O -0.54 -12.35 17.33 5.24 0.09 -12.26 16
13 N -0.60 -11.01 3.31 -171.74 -0.57 -11.58 16
14 C 0.07 1.23 5.03 -3.06 -0.02 1.21 16
15 C 0.18 3.32 2.86 -66.10 -0.19 3.13 16
16 H 0.07 1.27 8.02 -51.93 -0.42 0.86 16
17 N -0.71 -16.36 4.62 -51.65 -0.24 -16.60 16
18 C -0.24 -6.26 9.98 -15.06 -0.15 -6.41 16
19 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16
20 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16
21 N -0.93 -26.76 13.06 55.49 0.72 -26.03 16
22 Si 0.90 21.32 29.55 -169.99 -5.02 16.29 16
23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16
24 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16
25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16
26 C -0.09 -1.44 0.84 -152.24 -0.13 -1.57 16
27 C -0.13 -1.80 8.58 37.16 0.32 -1.48 16
28 C -0.12 -2.01 8.22 37.16 0.31 -1.71 16
29 C 0.12 2.18 5.81 -2.41 -0.01 2.16 16
30 C -0.03 -0.48 8.07 -39.20 -0.32 -0.79 16
31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
32 H 0.07 0.78 8.06 -51.92 -0.42 0.36 16
33 H 0.06 0.52 8.04 -51.93 -0.42 0.10 16
34 H 0.12 0.93 8.04 -52.48 -0.42 0.51 16
35 H 0.19 0.58 8.06 -52.49 -0.42 0.16 16
36 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16
37 H 0.08 1.48 5.85 -51.93 -0.30 1.17 16
38 H 0.39 9.61 6.12 -40.82 -0.25 9.36 16
39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16
40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16
41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16
42 H 0.05 0.76 7.91 -51.93 -0.41 0.35 16
43 H 0.07 1.29 6.39 -51.93 -0.33 0.96 16
44 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16
45 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16
46 H 0.07 1.34 7.99 -51.93 -0.41 0.93 16
47 H 0.07 1.20 8.00 -51.93 -0.42 0.79 16
48 H 0.14 2.21 5.79 -52.49 -0.30 1.90 16
LS Contribution 390.39 15.07 5.88 5.88
Total: -1.00 -34.72 390.39 -9.78 -44.50
By element:
Atomic # 1 Polarization: 17.68 SS G_CDS: -8.25 Total: 9.43 kcal
Atomic # 6 Polarization: 1.49 SS G_CDS: -3.06 Total: -1.57 kcal
Atomic # 7 Polarization: -62.85 SS G_CDS: 0.57 Total: -62.27 kcal
Atomic # 8 Polarization: -12.35 SS G_CDS: 0.09 Total: -12.26 kcal
Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal
Total LS contribution 5.88 Total: 5.88 kcal
Total: -34.72 -9.78 -44.50 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000996414864.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 121.639 kcal
(2) G-P(sol) polarization free energy of solvation -34.717 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.921 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.779 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.497 kcal
(6) G-S(sol) free energy of system = (1) + (5) 77.142 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds