Wall clock time and date at job start Sat Apr 11 2020 06:40:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.35821 * 118.70405 * 2 1
4 4 C 1.40841 * 120.55895 * 180.25386 * 3 2 1
5 5 C 1.38426 * 134.89530 * 180.43716 * 4 3 2
6 6 N 1.33895 * 107.84275 * 179.52574 * 5 4 3
7 7 H 0.97002 * 125.01827 * 179.70828 * 6 5 4
8 8 N 1.39973 * 109.96231 * 359.73992 * 6 5 4
9 9 C 1.31476 * 109.01920 * 0.02562 * 8 6 5
10 10 C 1.46669 * 134.99582 * 179.97438 * 9 8 6
11 11 C 1.47170 * 120.72249 * 359.97438 * 10 9 8
12 12 O 1.21644 * 119.99851 * 313.76267 * 11 10 9
13 13 N 1.34776 * 120.00278 * 133.76501 * 11 10 9
14 14 C 1.47020 * 125.64559 * 4.85597 * 13 11 10
15 15 C 1.54326 * 107.27211 * 181.01994 * 14 13 11
16 16 H 1.09002 * 110.72185 * 140.55058 * 15 14 13
17 17 N 1.46496 * 110.72377 * 263.65631 * 15 14 13
18 18 C 1.36936 * 119.99695 * 273.54265 * 17 15 14
19 19 H 1.08001 * 119.99972 * 0.02562 * 18 17 15
20 20 C 1.38813 * 119.99852 * 179.97438 * 18 17 15
21 21 N 1.31618 * 119.99987 * 359.97438 * 20 18 17
22 22 Si 1.86803 * 119.99735 * 180.02562 * 20 18 17
23 23 H 1.48494 * 109.47558 * 359.97438 * 22 20 18
24 24 H 1.48506 * 109.46916 * 120.00036 * 22 20 18
25 25 H 1.48500 * 109.46856 * 239.99586 * 22 20 18
26 26 C 1.55157 * 102.93802 * 22.19682 * 15 14 13
27 27 C 1.52997 * 111.00820 * 82.57128 * 26 15 14
28 28 C 1.53004 * 111.00662 * 206.38625 * 26 15 14
29 29 C 1.47415 * 125.64843 * 184.54747 * 13 11 10
30 30 C 1.38591 * 118.55021 * 179.97438 * 10 9 8
31 31 H 1.08997 * 109.47396 * 90.00299 * 1 2 3
32 32 H 1.09007 * 109.47404 * 210.00151 * 1 2 3
33 33 H 1.09002 * 109.47379 * 329.99784 * 1 2 3
34 34 H 1.08005 * 119.71979 * 359.97438 * 3 2 1
35 35 H 1.07996 * 126.07757 * 359.26514 * 5 4 3
36 36 H 1.09003 * 109.88658 * 300.43973 * 14 13 11
37 37 H 1.09003 * 109.88495 * 61.45577 * 14 13 11
38 38 H 0.96998 * 120.00206 * 93.53739 * 17 15 14
39 39 H 0.97002 * 119.99612 * 180.02562 * 21 20 18
40 40 H 1.09001 * 109.47399 * 60.00072 * 27 26 15
41 41 H 1.08999 * 109.47568 * 180.02562 * 27 26 15
42 42 H 1.08997 * 109.47025 * 299.99690 * 27 26 15
43 43 H 1.09001 * 109.46700 * 59.99324 * 28 26 15
44 44 H 1.08999 * 109.47571 * 179.97438 * 28 26 15
45 45 H 1.08999 * 109.46501 * 300.00085 * 28 26 15
46 46 H 1.09002 * 110.37094 * 274.74743 * 29 13 11
47 47 H 1.09002 * 110.36894 * 37.07257 * 29 13 11
48 48 H 1.07999 * 119.31426 * 179.97438 * 30 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1593 1.1913 0.0000
4 6 3.5670 1.2369 -0.0054
5 6 4.5118 2.2486 0.0006
6 7 5.7233 1.6785 0.0006
7 1 6.5652 2.1603 0.0001
8 7 5.5955 0.2846 0.0006
9 6 4.3186 -0.0286 0.0000
10 6 3.5585 -1.2830 -0.0007
11 6 4.2509 -2.5816 -0.0015
12 8 5.1800 -2.7751 -0.7626
13 7 3.8556 -3.5567 0.8408
14 6 2.6915 -3.4951 1.7367
15 6 2.6486 -4.8217 2.5241
16 1 2.3618 -4.6457 3.5609
17 7 1.7325 -5.7721 1.8889
18 6 0.3986 -5.7479 2.1975
19 1 0.0219 -5.0278 2.9089
20 6 -0.4696 -6.6482 1.5953
21 7 -0.0107 -7.5247 0.7272
22 14 -2.2893 -6.6146 2.0158
23 1 -2.5478 -5.5432 3.0110
24 1 -3.0769 -6.3484 0.7852
25 1 -2.6899 -7.9261 2.5857
26 6 4.1140 -5.3244 2.4378
27 6 4.9870 -4.6550 3.5011
28 6 4.1791 -6.8482 2.5589
29 6 4.5151 -4.8640 1.0117
30 6 2.1741 -1.2186 -0.0006
31 1 -0.3634 -0.0001 -1.0276
32 1 -0.3634 -0.8900 0.5139
33 1 -0.3634 0.8900 0.5139
34 1 1.5938 2.1115 -0.0004
35 1 4.3079 3.3091 0.0006
36 1 2.7984 -2.6579 2.4265
37 1 1.7791 -3.3791 1.1516
38 1 2.0708 -6.4186 1.2497
39 1 -0.6175 -8.1535 0.3061
40 1 4.5956 -4.8873 4.4916
41 1 6.0089 -5.0250 3.4180
42 1 4.9786 -3.5754 3.3511
43 1 3.6058 -7.3017 1.7503
44 1 5.2173 -7.1738 2.4948
45 1 3.7603 -7.1547 3.5175
46 1 4.1531 -5.5719 0.2662
47 1 5.5972 -4.7554 0.9390
48 1 1.6022 -2.1347 -0.0015
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000996414864.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:40:43
Heat of formation + Delta-G solvation = 53.558681 kcal
Electronic energy + Delta-G solvation = -30572.152540 eV
Core-core repulsion = 26627.969858 eV
Total energy + Delta-G solvation = -3944.182682 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 1.32 seconds
Orbital eigenvalues (eV)
-42.27401 -41.31171 -39.31134 -38.30850 -35.70944 -34.69988 -33.44169 -32.60097
-32.10430 -31.15246 -29.47140 -28.06618 -27.70731 -27.20681 -25.89980 -25.08770
-23.23118 -22.50832 -21.94972 -20.37026 -19.81776 -19.10877 -19.07567 -18.24799
-17.54346 -17.12823 -16.59727 -16.40016 -15.89616 -15.77324 -15.71823 -15.45332
-15.34247 -14.71983 -14.54102 -14.28283 -14.25536 -14.18840 -13.77826 -13.48630
-13.25189 -13.18918 -12.96748 -12.86062 -12.80408 -12.73767 -12.69045 -12.44010
-12.26559 -12.12931 -11.99460 -11.81248 -11.62227 -11.45216 -11.27348 -11.21259
-10.98347 -10.80404 -9.85230 -9.64088 -8.98993 -8.53569 -7.88484 -5.17368
-0.58340 0.78987 1.16683 1.52376 1.53171 1.62665 1.69286 1.87295
2.04287 2.60543 2.74363 3.20944 3.34557 3.42422 3.60336 3.77949
3.79901 3.87440 4.03724 4.11748 4.17820 4.29975 4.37008 4.44754
4.46269 4.53462 4.59852 4.63516 4.70101 4.77624 4.87260 4.89770
4.95798 4.97347 5.05119 5.05751 5.10365 5.18350 5.28141 5.30716
5.32776 5.36062 5.39013 5.55777 5.61535 5.66323 5.90016 6.28401
6.31913 6.49785 6.58752 7.08842 7.39825 8.12285 8.37041 9.34976
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.011165 B = 0.003855 C = 0.003080
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2507.312354 B = 7261.433757 C = 9089.175188
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.106 4.106
2 C -0.157 4.157
3 C 0.009 3.991
4 C -0.242 4.242
5 C 0.138 3.862
6 N -0.418 5.418
7 H 0.461 0.539
8 N -0.352 5.352
9 C 0.111 3.889
10 C -0.155 4.155
11 C 0.571 3.429
12 O -0.587 6.587
13 N -0.600 5.600
14 C 0.084 3.916
15 C 0.173 3.827
16 H 0.081 0.919
17 N -0.722 5.722
18 C -0.233 4.233
19 H 0.084 0.916
20 C -0.071 4.071
21 N -0.969 5.969
22 Si 0.967 3.033
23 H -0.260 1.260
24 H -0.299 1.299
25 H -0.299 1.299
26 C -0.076 4.076
27 C -0.121 4.121
28 C -0.118 4.118
29 C 0.120 3.880
30 C -0.017 4.017
31 H 0.071 0.929
32 H 0.055 0.945
33 H 0.092 0.908
34 H 0.173 0.827
35 H 0.256 0.744
36 H 0.073 0.927
37 H 0.063 0.937
38 H 0.375 0.625
39 H 0.248 0.752
40 H 0.075 0.925
41 H 0.068 0.932
42 H 0.047 0.953
43 H 0.039 0.961
44 H 0.069 0.931
45 H 0.061 0.939
46 H 0.046 0.954
47 H 0.070 0.930
48 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.780 24.018 3.775 25.241
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C -0.158 4.158
3 C -0.011 4.011
4 C -0.252 4.252
5 C -0.021 4.021
6 N -0.119 5.119
7 H 0.309 0.691
8 N -0.180 5.180
9 C -0.046 4.046
10 C -0.162 4.162
11 C 0.362 3.638
12 O -0.469 6.469
13 N -0.332 5.332
14 C -0.041 4.041
15 C 0.063 3.937
16 H 0.099 0.901
17 N -0.361 5.361
18 C -0.365 4.365
19 H 0.102 0.898
20 C -0.263 4.263
21 N -0.620 5.620
22 Si 0.797 3.203
23 H -0.184 1.184
24 H -0.227 1.227
25 H -0.227 1.227
26 C -0.077 4.077
27 C -0.179 4.179
28 C -0.176 4.176
29 C -0.002 4.002
30 C -0.039 4.039
31 H 0.090 0.910
32 H 0.074 0.926
33 H 0.111 0.889
34 H 0.191 0.809
35 H 0.272 0.728
36 H 0.092 0.908
37 H 0.081 0.919
38 H 0.209 0.791
39 H 0.057 0.943
40 H 0.094 0.906
41 H 0.087 0.913
42 H 0.066 0.934
43 H 0.058 0.942
44 H 0.088 0.912
45 H 0.080 0.920
46 H 0.064 0.936
47 H 0.088 0.912
48 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges 8.373 23.516 3.442 25.198
hybrid contribution -1.095 -0.667 -0.685 1.454
sum 7.278 22.849 2.757 24.138
Atomic orbital electron populations
1.20789 0.88993 1.03680 1.02801 1.19303 0.97661 0.91677 1.07208
1.20556 0.90403 0.98628 0.91494 1.20016 0.95922 0.90812 1.18435
1.23730 0.83098 1.00838 0.94403 1.46477 1.09801 1.04555 1.51032
0.69138 1.77602 1.17484 0.91083 1.31798 1.21628 0.90967 0.94015
0.97951 1.19534 0.93047 0.88741 1.14833 1.18157 0.82607 0.83897
0.79096 1.90719 1.32253 1.82604 1.41331 1.48375 1.29646 1.15378
1.39772 1.23190 0.87156 1.01031 0.92736 1.21435 0.89114 0.87633
0.95544 0.90135 1.42608 1.04219 1.38653 1.50654 1.19671 0.84909
1.12961 1.18948 0.89837 1.25475 1.01917 0.98874 1.00075 1.69835
1.35077 1.23583 1.33492 0.85165 0.80871 0.77195 0.77091 1.18420
1.22689 1.22690 1.22006 0.95337 0.96894 0.93493 1.21622 0.99058
0.99563 0.97653 1.21498 1.01391 0.92647 1.02037 1.22305 0.97177
0.83642 0.97083 1.21399 0.91366 0.99565 0.91614 0.91036 0.92573
0.88929 0.80946 0.72781 0.90830 0.91892 0.79147 0.94314 0.90623
0.91303 0.93375 0.94220 0.91188 0.91987 0.93570 0.91185 0.85893
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.91 9.93 71.24 0.71 -1.20 16
2 C -0.16 -3.61 5.82 -20.26 -0.12 -3.73 16
3 C 0.01 0.16 9.58 22.35 0.21 0.37 16
4 C -0.24 -5.06 6.34 -20.24 -0.13 -5.19 16
5 C 0.14 1.54 12.08 84.42 1.02 2.56 16
6 N -0.42 -6.86 7.18 -56.28 -0.40 -7.26 16
7 H 0.46 3.57 8.96 -213.40 -1.91 1.66 16
8 N -0.35 -11.11 12.67 -45.22 -0.57 -11.68 16
9 C 0.11 3.59 7.44 43.75 0.33 3.91 16
10 C -0.16 -5.63 5.60 -18.64 -0.10 -5.73 16
11 C 0.57 24.27 7.44 86.59 0.64 24.92 16
12 O -0.59 -29.07 17.33 -4.17 -0.07 -29.15 16
13 N -0.60 -23.46 3.31 -815.49 -2.70 -26.15 16
14 C 0.08 3.05 5.03 86.73 0.44 3.49 16
15 C 0.17 6.50 2.86 46.18 0.13 6.64 16
16 H 0.08 2.88 8.02 -2.39 -0.02 2.86 16
17 N -0.72 -34.26 4.62 -317.33 -1.47 -35.73 16
18 C -0.23 -12.09 9.98 84.03 0.84 -11.25 16
19 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16
20 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16
21 N -0.97 -58.17 13.06 21.65 0.28 -57.89 16
22 Si 0.97 44.56 29.55 68.60 2.03 46.59 16
23 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16
24 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16
25 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16
26 C -0.08 -2.49 0.84 -50.71 -0.04 -2.53 16
27 C -0.12 -3.22 8.58 71.98 0.62 -2.60 16
28 C -0.12 -3.87 8.22 71.98 0.59 -3.28 16
29 C 0.12 4.55 5.81 86.94 0.50 5.05 16
30 C -0.02 -0.54 8.07 22.52 0.18 -0.36 16
31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16
32 H 0.06 1.17 8.06 -2.38 -0.02 1.16 16
33 H 0.09 1.12 8.04 -2.39 -0.02 1.10 16
34 H 0.17 1.36 8.04 -2.91 -0.02 1.33 16
35 H 0.26 -0.72 8.06 -2.91 -0.02 -0.74 16
36 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16
37 H 0.06 2.50 5.85 -2.39 -0.01 2.48 16
38 H 0.37 19.67 6.12 -92.71 -0.57 19.10 16
39 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16
40 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16
41 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16
42 H 0.05 1.33 7.91 -2.39 -0.02 1.32 16
43 H 0.04 1.54 6.39 -2.39 -0.02 1.53 16
44 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16
45 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16
46 H 0.05 1.94 7.99 -2.39 -0.02 1.92 16
47 H 0.07 2.60 8.00 -2.39 -0.02 2.58 16
48 H 0.12 4.14 5.79 -2.91 -0.02 4.13 16
Total: -1.00 -83.42 390.39 1.91 -81.51
By element:
Atomic # 1 Polarization: 33.63 SS G_CDS: -1.48 Total: 32.16 kcal
Atomic # 6 Polarization: 1.32 SS G_CDS: 6.29 Total: 7.61 kcal
Atomic # 7 Polarization: -133.86 SS G_CDS: -4.86 Total: -138.72 kcal
Atomic # 8 Polarization: -29.07 SS G_CDS: -0.07 Total: -29.15 kcal
Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal
Total: -83.42 1.91 -81.51 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000996414864.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 135.067 kcal
(2) G-P(sol) polarization free energy of solvation -83.415 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.651 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.907 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.508 kcal
(6) G-S(sol) free energy of system = (1) + (5) 53.559 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.32 seconds