Wall clock time and date at job start Sat Apr 11 2020 06:41:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50692 * 1
3 3 C 1.40575 * 119.82624 * 2 1
4 4 C 1.35892 * 119.72959 * 180.30382 * 3 2 1
5 5 C 1.41192 * 119.34944 * 359.69637 * 4 3 2
6 6 N 1.32234 * 132.05061 * 179.97438 * 5 4 3
7 7 C 1.34576 * 109.02367 * 180.02562 * 6 5 4
8 8 C 1.47596 * 125.91894 * 180.02562 * 7 6 5
9 9 O 1.21587 * 120.00187 * 173.71126 * 8 7 6
10 10 N 1.34774 * 119.99874 * 353.70587 * 8 7 6
11 11 C 1.46507 * 120.00009 * 3.19464 * 10 8 7
12 12 C 1.46501 * 120.00310 * 183.19603 * 10 8 7
13 13 C 1.53038 * 109.45871 * 240.02762 * 12 10 8
14 14 C 1.53189 * 109.31041 * 178.59647 * 13 12 10
15 15 N 1.46922 * 108.76613 * 54.65833 * 14 13 12
16 16 C 1.36939 * 120.63456 * 126.40066 * 15 14 13
17 17 H 1.07998 * 119.99998 * 323.96586 * 16 15 14
18 18 C 1.38812 * 119.99798 * 143.96259 * 16 15 14
19 19 N 1.31617 * 120.00083 * 1.89692 * 18 16 15
20 20 Si 1.86807 * 119.99796 * 181.89962 * 18 16 15
21 21 H 1.48500 * 109.46865 * 89.99840 * 20 18 16
22 22 H 1.48491 * 109.47100 * 210.00115 * 20 18 16
23 23 H 1.48508 * 109.46724 * 330.00192 * 20 18 16
24 24 C 1.46929 * 118.73774 * 306.38037 * 15 14 13
25 25 C 1.53040 * 109.46179 * 119.97160 * 12 10 8
26 26 C 1.36584 * 108.16588 * 359.97438 * 7 6 5
27 27 N 1.36187 * 107.09033 * 0.02562 * 26 7 6
28 28 C 1.34841 * 119.83256 * 179.71180 * 2 1 3
29 29 H 1.09003 * 109.47549 * 270.28685 * 1 2 3
30 30 H 1.08998 * 109.47684 * 30.28591 * 1 2 3
31 31 H 1.09008 * 109.47338 * 150.28678 * 1 2 3
32 32 H 1.08005 * 120.13847 * 359.97438 * 3 2 1
33 33 H 1.08003 * 120.32941 * 179.67303 * 4 3 2
34 34 H 1.09004 * 109.46794 * 83.98516 * 11 10 8
35 35 H 1.08996 * 109.47053 * 203.98621 * 11 10 8
36 36 H 1.09000 * 109.46840 * 323.99159 * 11 10 8
37 37 H 1.08998 * 109.45525 * 359.97438 * 12 10 8
38 38 H 1.08998 * 109.49894 * 298.56522 * 13 12 10
39 39 H 1.09005 * 109.49693 * 58.66103 * 13 12 10
40 40 H 1.09002 * 109.60327 * 294.86775 * 14 13 12
41 41 H 1.09006 * 109.70389 * 174.50860 * 14 13 12
42 42 H 0.97009 * 119.99447 * 179.97438 * 19 18 16
43 43 H 1.08997 * 109.59112 * 293.82144 * 24 15 14
44 44 H 1.09004 * 109.70673 * 173.46288 * 24 15 14
45 45 H 1.09001 * 109.49870 * 301.34389 * 25 12 10
46 46 H 1.09001 * 109.49529 * 61.43360 * 25 12 10
47 47 H 1.07997 * 126.44873 * 179.97438 * 26 7 6
48 48 H 1.08005 * 119.67944 * 0.02562 * 28 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.2061 1.2195 0.0000
4 6 3.5650 1.2173 -0.0063
5 6 4.2550 -0.0146 -0.0062
6 7 5.5444 -0.3075 -0.0118
7 6 5.6904 -1.6453 -0.0092
8 6 6.9726 -2.3764 -0.0132
9 8 6.9828 -3.5865 0.1050
10 7 8.1320 -1.7027 -0.1479
11 6 8.1249 -0.2394 -0.2201
12 6 9.3996 -2.4335 -0.2222
13 6 10.3052 -2.0022 0.9335
14 6 11.6155 -2.7936 0.8729
15 7 12.2120 -2.6190 -0.4583
16 6 13.5041 -2.1857 -0.5926
17 1 13.9034 -1.4563 0.0966
18 6 14.3005 -2.6840 -1.6145
19 7 13.8027 -3.5447 -2.4767
20 14 16.0791 -2.1329 -1.7657
21 1 16.9483 -3.0448 -0.9796
22 1 16.4882 -2.1669 -3.1927
23 1 16.2143 -0.7488 -1.2447
24 6 11.3960 -2.9186 -1.6429
25 6 10.0881 -2.1260 -1.5539
26 6 4.4465 -2.2094 -0.0012
27 7 3.5444 -1.1891 0.0005
28 6 2.1777 -1.1697 0.0059
29 1 -0.3634 0.0051 1.0277
30 1 -0.3634 0.8874 -0.5182
31 1 -0.3634 -0.8926 -0.5094
32 1 1.6655 2.1546 -0.0004
33 1 4.1119 2.1485 -0.0116
34 1 8.1046 0.1740 0.7883
35 1 9.0221 0.1033 -0.7353
36 1 7.2424 0.0930 -0.7668
37 1 9.2062 -3.5039 -0.1517
38 1 10.5193 -0.9367 0.8499
39 1 9.8045 -2.1998 1.8814
40 1 11.4127 -3.8504 1.0467
41 1 12.3037 -2.4238 1.6331
42 1 14.3593 -3.8926 -3.1911
43 1 11.1753 -3.9855 -1.6744
44 1 11.9371 -2.6307 -2.5443
45 1 9.4328 -2.4116 -2.3768
46 1 10.3042 -1.0593 -1.6139
47 1 4.2209 -3.2655 0.0023
48 1 1.6297 -2.1004 0.0101
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001005586758.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:41:18
Heat of formation + Delta-G solvation = 88.085000 kcal
Electronic energy + Delta-G solvation = -29481.247743 eV
Core-core repulsion = 25538.562234 eV
Total energy + Delta-G solvation = -3942.685509 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-43.15357 -39.73983 -38.07567 -37.15027 -35.01588 -34.06047 -32.72109 -32.16520
-30.11974 -29.56128 -29.20406 -27.37362 -26.58165 -25.24195 -24.10982 -23.10455
-22.47936 -22.03947 -21.37180 -19.34259 -18.76006 -18.09985 -17.26499 -16.79236
-16.41219 -16.24918 -15.87207 -15.23233 -14.98240 -14.94034 -14.70254 -14.27722
-13.97866 -13.85491 -13.45871 -13.30683 -13.01401 -12.91049 -12.76599 -12.70291
-12.39199 -12.34242 -12.11302 -11.96090 -11.62794 -11.40736 -11.35641 -10.89302
-10.80991 -10.70890 -10.30274 -10.20062 -10.09331 -10.00973 -9.75645 -9.67369
-9.41585 -9.05940 -8.44519 -8.28511 -8.07797 -6.48770 -5.73942 -3.27009
0.26915 0.86106 1.92798 2.15396 3.01430 3.26671 3.40799 3.46873
3.47999 3.55665 3.76551 4.03555 4.21315 4.33907 4.52156 4.53667
4.80149 4.89005 5.00392 5.03365 5.11202 5.38917 5.40835 5.42894
5.47476 5.60042 5.63091 5.67672 5.67966 5.76495 5.92918 5.98870
6.03964 6.06458 6.21241 6.35469 6.41139 6.50211 6.62322 6.65070
6.71000 6.75905 6.89049 7.04086 7.09527 7.40634 7.48287 7.72475
7.83160 7.85582 8.40076 8.57883 9.29714 9.88511 10.49644 11.33155
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.032577 B = 0.002066 C = 0.002024
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 859.288191 B =13548.324738 C =13833.137477
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.105 4.105
2 C -0.106 4.106
3 C -0.102 4.102
4 C -0.069 4.069
5 C 0.215 3.785
6 N -0.456 5.456
7 C 0.017 3.983
8 C 0.591 3.409
9 O -0.543 6.543
10 N -0.588 5.588
11 C 0.075 3.925
12 C 0.144 3.856
13 C -0.137 4.137
14 C 0.148 3.852
15 N -0.594 5.594
16 C -0.253 4.253
17 H 0.063 0.937
18 C 0.008 3.992
19 N -0.904 5.904
20 Si 0.904 3.096
21 H -0.286 1.286
22 H -0.291 1.291
23 H -0.279 1.279
24 C 0.173 3.827
25 C -0.146 4.146
26 C -0.021 4.021
27 N -0.362 5.362
28 C 0.049 3.951
29 H 0.076 0.924
30 H 0.075 0.925
31 H 0.070 0.930
32 H 0.143 0.857
33 H 0.154 0.846
34 H 0.050 0.950
35 H 0.067 0.933
36 H 0.097 0.903
37 H 0.095 0.905
38 H 0.060 0.940
39 H 0.051 0.949
40 H 0.020 0.980
41 H 0.056 0.944
42 H 0.254 0.746
43 H 0.018 0.982
44 H 0.098 0.902
45 H 0.049 0.951
46 H 0.057 0.943
47 H 0.195 0.805
48 H 0.164 0.836
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -29.052 9.619 4.589 30.946
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C -0.109 4.109
3 C -0.125 4.125
4 C -0.089 4.089
5 C -0.029 4.029
6 N -0.178 5.178
7 C -0.116 4.116
8 C 0.377 3.623
9 O -0.421 6.421
10 N -0.318 5.318
11 C -0.068 4.068
12 C 0.043 3.957
13 C -0.177 4.177
14 C 0.021 3.979
15 N -0.317 5.317
16 C -0.383 4.383
17 H 0.081 0.919
18 C -0.191 4.191
19 N -0.548 5.548
20 Si 0.733 3.267
21 H -0.213 1.213
22 H -0.217 1.217
23 H -0.205 1.205
24 C 0.047 3.953
25 C -0.186 4.186
26 C -0.156 4.156
27 N -0.033 5.033
28 C -0.072 4.072
29 H 0.095 0.905
30 H 0.094 0.906
31 H 0.089 0.911
32 H 0.161 0.839
33 H 0.172 0.828
34 H 0.069 0.931
35 H 0.086 0.914
36 H 0.115 0.885
37 H 0.113 0.887
38 H 0.079 0.921
39 H 0.069 0.931
40 H 0.038 0.962
41 H 0.075 0.925
42 H 0.065 0.935
43 H 0.036 0.964
44 H 0.116 0.884
45 H 0.068 0.932
46 H 0.076 0.924
47 H 0.212 0.788
48 H 0.181 0.819
Dipole moment (debyes) X Y Z Total
from point charges -28.231 9.388 4.497 30.089
hybrid contribution 0.243 -0.258 -0.087 0.365
sum -27.987 9.130 4.410 29.767
Atomic orbital electron populations
1.20693 0.88902 1.03586 1.03011 1.19500 0.97323 0.91687 1.02396
1.20987 0.93417 0.98147 0.99991 1.20344 0.93613 0.94739 1.00253
1.21184 0.87631 0.87437 1.06673 1.71110 1.12662 1.13059 1.20958
1.20755 0.93808 0.89837 1.07170 1.16983 0.82021 0.85991 0.77264
1.90784 1.86720 1.13112 1.51508 1.47992 1.06102 1.07968 1.69700
1.22124 1.03791 0.78795 1.02065 1.21261 0.80723 0.97141 0.96597
1.22358 0.97591 1.01285 0.96456 1.20892 0.91718 0.95952 0.89316
1.44012 1.10669 1.77838 0.99138 1.19138 0.87273 1.17859 1.14022
0.91942 1.25348 0.97824 0.96794 0.99101 1.69911 1.35091 1.32825
1.16967 0.86278 0.85287 0.78234 0.76869 1.21310 1.21695 1.20454
1.20877 0.87059 0.94705 0.92707 1.22616 0.99585 1.01835 0.94611
1.22608 0.87273 0.94038 1.11671 1.42708 1.06157 1.08715 1.45673
1.21454 0.80579 1.00612 1.04510 0.90546 0.90602 0.91090 0.83893
0.82802 0.93114 0.91396 0.88456 0.88736 0.92086 0.93052 0.96222
0.92506 0.93527 0.96364 0.88390 0.93202 0.92391 0.78783 0.81887
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -0.25 10.00 36.00 0.36 0.11 16
2 C -0.11 -0.58 5.85 -104.95 -0.61 -1.19 16
3 C -0.10 -0.57 9.73 -39.54 -0.38 -0.96 16
4 C -0.07 -0.55 10.11 -39.30 -0.40 -0.95 16
5 C 0.22 2.48 7.80 -156.04 -1.22 1.26 16
6 N -0.46 -6.36 7.79 -9.35 -0.07 -6.43 16
7 C 0.02 0.26 6.64 -83.44 -0.55 -0.29 16
8 C 0.59 10.54 7.67 -12.44 -0.10 10.45 16
9 O -0.54 -11.03 16.21 5.29 0.09 -10.94 16
10 N -0.59 -10.29 2.76 -175.09 -0.48 -10.78 16
11 C 0.08 1.13 8.64 59.85 0.52 1.65 16
12 C 0.14 2.82 2.47 -67.89 -0.17 2.65 16
13 C -0.14 -2.62 5.34 -26.61 -0.14 -2.76 16
14 C 0.15 3.28 6.52 -3.71 -0.02 3.25 16
15 N -0.59 -15.31 2.99 -172.32 -0.52 -15.83 16
16 C -0.25 -7.04 9.55 -15.06 -0.14 -7.18 16
17 H 0.06 1.71 7.83 -52.49 -0.41 1.29 16
18 C 0.01 0.23 5.28 -17.43 -0.09 0.13 16
19 N -0.90 -26.48 10.76 55.49 0.60 -25.89 16
20 Si 0.90 21.89 29.55 -169.99 -5.02 16.87 16
21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16
23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
24 C 0.17 4.30 5.23 -3.71 -0.02 4.28 16
25 C -0.15 -3.02 5.32 -26.61 -0.14 -3.16 16
26 C -0.02 -0.25 11.47 -16.22 -0.19 -0.44 16
27 N -0.36 -3.77 2.93 -62.37 -0.18 -3.95 16
28 C 0.05 0.34 10.54 -16.59 -0.17 0.17 16
29 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16
30 H 0.08 0.12 8.09 -51.93 -0.42 -0.30 16
31 H 0.07 0.12 8.07 -51.92 -0.42 -0.30 16
32 H 0.14 0.39 8.06 -52.48 -0.42 -0.03 16
33 H 0.15 0.94 8.06 -52.48 -0.42 0.51 16
34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16
35 H 0.07 1.03 6.47 -51.93 -0.34 0.69 16
36 H 0.10 1.42 5.32 -51.93 -0.28 1.15 16
37 H 0.09 2.04 6.90 -51.93 -0.36 1.68 16
38 H 0.06 1.16 7.72 -51.93 -0.40 0.76 16
39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16
40 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16
41 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16
42 H 0.25 7.20 8.31 -40.82 -0.34 6.87 16
43 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16
44 H 0.10 2.70 6.06 -51.93 -0.31 2.38 16
45 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16
46 H 0.06 1.19 6.72 -51.93 -0.35 0.84 16
47 H 0.20 1.96 8.06 -52.49 -0.42 1.54 16
48 H 0.16 0.66 8.06 -52.48 -0.42 0.24 16
LS Contribution 382.98 15.07 5.77 5.77
Total: -1.00 -33.95 382.98 -10.36 -44.31
By element:
Atomic # 1 Polarization: 6.92 SS G_CDS: -7.06 Total: -0.14 kcal
Atomic # 6 Polarization: 10.48 SS G_CDS: -3.48 Total: 7.00 kcal
Atomic # 7 Polarization: -62.22 SS G_CDS: -0.66 Total: -62.88 kcal
Atomic # 8 Polarization: -11.03 SS G_CDS: 0.09 Total: -10.94 kcal
Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal
Total LS contribution 5.77 Total: 5.77 kcal
Total: -33.95 -10.36 -44.31 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001005586758.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 132.396 kcal
(2) G-P(sol) polarization free energy of solvation -33.950 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.446 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.361 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.311 kcal
(6) G-S(sol) free energy of system = (1) + (5) 88.085 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds