Wall clock time and date at job start Sat Apr 11 2020 06:41:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50692 * 1
3 3 C 1.40575 * 119.82624 * 2 1
4 4 C 1.35892 * 119.72959 * 180.30382 * 3 2 1
5 5 C 1.41192 * 119.34944 * 359.69637 * 4 3 2
6 6 N 1.32234 * 132.05061 * 179.97438 * 5 4 3
7 7 C 1.34576 * 109.02367 * 180.02562 * 6 5 4
8 8 C 1.47596 * 125.91894 * 180.02562 * 7 6 5
9 9 O 1.21587 * 120.00187 * 173.71126 * 8 7 6
10 10 N 1.34774 * 119.99874 * 353.70587 * 8 7 6
11 11 C 1.46507 * 120.00009 * 3.19464 * 10 8 7
12 12 C 1.46501 * 120.00310 * 183.19603 * 10 8 7
13 13 C 1.53038 * 109.45871 * 240.02762 * 12 10 8
14 14 C 1.53189 * 109.31041 * 178.59647 * 13 12 10
15 15 N 1.46922 * 108.76613 * 54.65833 * 14 13 12
16 16 C 1.36939 * 120.63456 * 126.40066 * 15 14 13
17 17 H 1.07998 * 119.99998 * 323.96586 * 16 15 14
18 18 C 1.38812 * 119.99798 * 143.96259 * 16 15 14
19 19 N 1.31617 * 120.00083 * 1.89692 * 18 16 15
20 20 Si 1.86807 * 119.99796 * 181.89962 * 18 16 15
21 21 H 1.48500 * 109.46865 * 89.99840 * 20 18 16
22 22 H 1.48491 * 109.47100 * 210.00115 * 20 18 16
23 23 H 1.48508 * 109.46724 * 330.00192 * 20 18 16
24 24 C 1.46929 * 118.73774 * 306.38037 * 15 14 13
25 25 C 1.53040 * 109.46179 * 119.97160 * 12 10 8
26 26 C 1.36584 * 108.16588 * 359.97438 * 7 6 5
27 27 N 1.36187 * 107.09033 * 0.02562 * 26 7 6
28 28 C 1.34841 * 119.83256 * 179.71180 * 2 1 3
29 29 H 1.09003 * 109.47549 * 270.28685 * 1 2 3
30 30 H 1.08998 * 109.47684 * 30.28591 * 1 2 3
31 31 H 1.09008 * 109.47338 * 150.28678 * 1 2 3
32 32 H 1.08005 * 120.13847 * 359.97438 * 3 2 1
33 33 H 1.08003 * 120.32941 * 179.67303 * 4 3 2
34 34 H 1.09004 * 109.46794 * 83.98516 * 11 10 8
35 35 H 1.08996 * 109.47053 * 203.98621 * 11 10 8
36 36 H 1.09000 * 109.46840 * 323.99159 * 11 10 8
37 37 H 1.08998 * 109.45525 * 359.97438 * 12 10 8
38 38 H 1.08998 * 109.49894 * 298.56522 * 13 12 10
39 39 H 1.09005 * 109.49693 * 58.66103 * 13 12 10
40 40 H 1.09002 * 109.60327 * 294.86775 * 14 13 12
41 41 H 1.09006 * 109.70389 * 174.50860 * 14 13 12
42 42 H 0.97009 * 119.99447 * 179.97438 * 19 18 16
43 43 H 1.08997 * 109.59112 * 293.82144 * 24 15 14
44 44 H 1.09004 * 109.70673 * 173.46288 * 24 15 14
45 45 H 1.09001 * 109.49870 * 301.34389 * 25 12 10
46 46 H 1.09001 * 109.49529 * 61.43360 * 25 12 10
47 47 H 1.07997 * 126.44873 * 179.97438 * 26 7 6
48 48 H 1.08005 * 119.67944 * 0.02562 * 28 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.2061 1.2195 0.0000
4 6 3.5650 1.2173 -0.0063
5 6 4.2550 -0.0146 -0.0062
6 7 5.5444 -0.3075 -0.0118
7 6 5.6904 -1.6453 -0.0092
8 6 6.9726 -2.3764 -0.0132
9 8 6.9828 -3.5865 0.1050
10 7 8.1320 -1.7027 -0.1479
11 6 8.1249 -0.2394 -0.2201
12 6 9.3996 -2.4335 -0.2222
13 6 10.3052 -2.0022 0.9335
14 6 11.6155 -2.7936 0.8729
15 7 12.2120 -2.6190 -0.4583
16 6 13.5041 -2.1857 -0.5926
17 1 13.9034 -1.4563 0.0966
18 6 14.3005 -2.6840 -1.6145
19 7 13.8027 -3.5447 -2.4767
20 14 16.0791 -2.1329 -1.7657
21 1 16.9483 -3.0448 -0.9796
22 1 16.4882 -2.1669 -3.1927
23 1 16.2143 -0.7488 -1.2447
24 6 11.3960 -2.9186 -1.6429
25 6 10.0881 -2.1260 -1.5539
26 6 4.4465 -2.2094 -0.0012
27 7 3.5444 -1.1891 0.0005
28 6 2.1777 -1.1697 0.0059
29 1 -0.3634 0.0051 1.0277
30 1 -0.3634 0.8874 -0.5182
31 1 -0.3634 -0.8926 -0.5094
32 1 1.6655 2.1546 -0.0004
33 1 4.1119 2.1485 -0.0116
34 1 8.1046 0.1740 0.7883
35 1 9.0221 0.1033 -0.7353
36 1 7.2424 0.0930 -0.7668
37 1 9.2062 -3.5039 -0.1517
38 1 10.5193 -0.9367 0.8499
39 1 9.8045 -2.1998 1.8814
40 1 11.4127 -3.8504 1.0467
41 1 12.3037 -2.4238 1.6331
42 1 14.3593 -3.8926 -3.1911
43 1 11.1753 -3.9855 -1.6744
44 1 11.9371 -2.6307 -2.5443
45 1 9.4328 -2.4116 -2.3768
46 1 10.3042 -1.0593 -1.6139
47 1 4.2209 -3.2655 0.0023
48 1 1.6297 -2.1004 0.0101
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001005586758.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:41:18
Heat of formation + Delta-G solvation = 69.746502 kcal
Electronic energy + Delta-G solvation = -29482.042959 eV
Core-core repulsion = 25538.562234 eV
Total energy + Delta-G solvation = -3943.480726 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-43.94440 -41.11465 -39.13730 -38.47211 -36.61227 -34.89133 -34.21069 -33.09458
-31.89981 -31.37048 -30.05440 -28.10222 -27.88097 -26.89191 -25.09694 -24.18046
-23.85111 -23.19531 -22.80930 -20.78908 -20.24641 -19.01869 -18.71554 -18.08670
-17.34386 -17.24582 -17.17308 -16.76613 -16.16597 -15.98449 -15.65291 -15.50183
-15.34911 -15.04660 -14.83430 -14.59306 -14.40377 -14.16622 -14.13126 -13.85058
-13.37589 -13.26322 -13.22311 -13.10243 -12.83006 -12.74671 -12.53479 -12.45332
-12.39163 -12.07695 -11.96917 -11.92321 -11.91217 -11.54181 -11.40298 -11.38799
-10.84271 -10.55202 -9.88096 -9.56949 -8.91886 -8.57944 -7.86747 -5.44111
-0.36068 0.17147 0.94452 1.40358 1.47999 1.49420 1.58483 1.97807
2.23363 2.50444 2.51430 2.95709 3.30024 3.33935 3.65440 3.67538
3.77752 3.91057 3.99291 4.04339 4.10092 4.23191 4.29986 4.35507
4.45456 4.46894 4.64371 4.71837 4.72909 4.76469 4.81127 4.84505
4.90245 4.97973 5.03085 5.04546 5.09404 5.13301 5.25123 5.29527
5.32749 5.35906 5.48771 5.57191 5.61685 5.64888 5.74782 5.93804
6.33669 6.45248 6.56790 7.05193 7.16848 7.82309 8.39598 9.18802
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.032577 B = 0.002066 C = 0.002024
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 859.288191 B =13548.324738 C =13833.137477
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.104 4.104
2 C -0.096 4.096
3 C -0.078 4.078
4 C -0.095 4.095
5 C 0.208 3.792
6 N -0.485 5.485
7 C -0.016 4.016
8 C 0.589 3.411
9 O -0.579 6.579
10 N -0.590 5.590
11 C 0.083 3.917
12 C 0.154 3.846
13 C -0.121 4.121
14 C 0.146 3.854
15 N -0.610 5.610
16 C -0.265 4.265
17 H 0.068 0.932
18 C -0.047 4.047
19 N -0.936 5.936
20 Si 0.973 3.027
21 H -0.285 1.285
22 H -0.293 1.293
23 H -0.267 1.267
24 C 0.182 3.818
25 C -0.129 4.129
26 C -0.019 4.019
27 N -0.362 5.362
28 C 0.028 3.972
29 H 0.088 0.912
30 H 0.091 0.909
31 H 0.080 0.920
32 H 0.180 0.820
33 H 0.168 0.832
34 H 0.058 0.942
35 H 0.066 0.934
36 H 0.104 0.896
37 H 0.071 0.929
38 H 0.068 0.932
39 H 0.068 0.932
40 H 0.011 0.989
41 H 0.065 0.935
42 H 0.251 0.749
43 H -0.009 1.009
44 H 0.069 0.931
45 H 0.054 0.946
46 H 0.064 0.936
47 H 0.208 0.792
48 H 0.190 0.810
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -32.077 12.133 5.409 34.719
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C -0.098 4.098
3 C -0.102 4.102
4 C -0.115 4.115
5 C -0.038 4.038
6 N -0.207 5.207
7 C -0.148 4.148
8 C 0.377 3.623
9 O -0.459 6.459
10 N -0.319 5.319
11 C -0.059 4.059
12 C 0.051 3.949
13 C -0.161 4.161
14 C 0.020 3.980
15 N -0.334 5.334
16 C -0.395 4.395
17 H 0.086 0.914
18 C -0.242 4.242
19 N -0.581 5.581
20 Si 0.800 3.200
21 H -0.212 1.212
22 H -0.219 1.219
23 H -0.191 1.191
24 C 0.056 3.944
25 C -0.169 4.169
26 C -0.155 4.155
27 N -0.031 5.031
28 C -0.091 4.091
29 H 0.106 0.894
30 H 0.109 0.891
31 H 0.099 0.901
32 H 0.198 0.802
33 H 0.186 0.814
34 H 0.076 0.924
35 H 0.085 0.915
36 H 0.122 0.878
37 H 0.089 0.911
38 H 0.086 0.914
39 H 0.086 0.914
40 H 0.029 0.971
41 H 0.084 0.916
42 H 0.060 0.940
43 H 0.009 0.991
44 H 0.087 0.913
45 H 0.073 0.927
46 H 0.083 0.917
47 H 0.225 0.775
48 H 0.207 0.793
Dipole moment (debyes) X Y Z Total
from point charges -31.290 11.937 5.340 33.913
hybrid contribution 0.905 -0.965 -0.315 1.360
sum -30.385 10.972 5.025 32.694
Atomic orbital electron populations
1.20808 0.86242 1.04921 1.04098 1.20019 0.99051 0.91018 0.99743
1.21518 0.92605 0.99824 0.96248 1.20656 0.94712 0.93955 1.02171
1.21702 0.87274 0.88888 1.05904 1.70928 1.14494 1.12384 1.22889
1.20337 0.93139 0.90727 1.10633 1.17395 0.82962 0.85768 0.76188
1.90745 1.87390 1.14662 1.53151 1.47941 1.05303 1.08826 1.69849
1.22171 1.04012 0.77120 1.02621 1.20911 0.81867 0.96188 0.95938
1.22161 0.95901 1.00971 0.97038 1.20997 0.93145 0.96035 0.87814
1.44238 1.10655 1.77984 1.00485 1.19481 0.88159 1.17936 1.13953
0.91423 1.26140 1.01867 0.97239 0.98972 1.70106 1.36288 1.34221
1.17476 0.85195 0.80043 0.78266 0.76456 1.21166 1.21946 1.19106
1.20593 0.88541 0.93645 0.91671 1.22344 0.97533 1.01246 0.95759
1.22709 0.86941 0.94923 1.10973 1.42806 1.07296 1.07802 1.45243
1.22126 0.79169 1.02737 1.05103 0.89382 0.89069 0.90083 0.80234
0.81410 0.92368 0.91488 0.87802 0.91125 0.91358 0.91384 0.97090
0.91645 0.93970 0.99086 0.91279 0.92745 0.91747 0.77521 0.79294
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -0.02 10.00 71.23 0.71 0.70 16
2 C -0.10 -0.66 5.85 -20.08 -0.12 -0.78 16
3 C -0.08 -0.56 9.73 22.30 0.22 -0.35 16
4 C -0.10 -1.28 10.11 22.45 0.23 -1.06 16
5 C 0.21 4.56 7.80 134.20 1.05 5.61 16
6 N -0.48 -13.50 7.79 -183.48 -1.43 -14.93 16
7 C -0.02 -0.50 6.64 40.81 0.27 -0.23 16
8 C 0.59 21.69 7.67 86.71 0.67 22.35 16
9 O -0.58 -24.56 16.21 -3.99 -0.06 -24.62 16
10 N -0.59 -21.02 2.76 -826.11 -2.28 -23.30 16
11 C 0.08 2.47 8.64 127.77 1.10 3.58 16
12 C 0.15 6.15 2.47 45.02 0.11 6.26 16
13 C -0.12 -4.62 5.34 30.67 0.16 -4.45 16
14 C 0.15 6.54 6.52 86.36 0.56 7.11 16
15 N -0.61 -32.24 2.99 -699.09 -2.09 -34.33 16
16 C -0.27 -14.93 9.55 84.03 0.80 -14.13 16
17 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16
18 C -0.05 -2.66 5.28 84.86 0.45 -2.22 16
19 N -0.94 -56.61 10.76 21.65 0.23 -56.37 16
20 Si 0.97 45.54 29.55 68.60 2.03 47.57 16
21 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16
22 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16
23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16
24 C 0.18 9.47 5.23 86.36 0.45 9.92 16
25 C -0.13 -5.48 5.32 30.67 0.16 -5.32 16
26 C -0.02 -0.46 11.47 83.63 0.96 0.50 16
27 N -0.36 -7.07 2.93 -351.24 -1.03 -8.10 16
28 C 0.03 0.32 10.54 83.16 0.88 1.19 16
29 H 0.09 -0.09 8.14 -2.39 -0.02 -0.11 16
30 H 0.09 -0.19 8.09 -2.39 -0.02 -0.21 16
31 H 0.08 -0.08 8.07 -2.38 -0.02 -0.10 16
32 H 0.18 -0.02 8.06 -2.91 -0.02 -0.04 16
33 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16
34 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16
35 H 0.07 1.99 6.47 -2.39 -0.02 1.97 16
36 H 0.10 3.04 5.32 -2.39 -0.01 3.03 16
37 H 0.07 3.19 6.90 -2.39 -0.02 3.17 16
38 H 0.07 2.53 7.72 -2.39 -0.02 2.51 16
39 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16
40 H 0.01 0.51 8.14 -2.39 -0.02 0.50 16
41 H 0.07 2.78 7.93 -2.38 -0.02 2.76 16
42 H 0.25 14.67 8.31 -92.70 -0.77 13.90 16
43 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16
44 H 0.07 3.99 6.06 -2.38 -0.01 3.98 16
45 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16
46 H 0.06 2.66 6.72 -2.39 -0.02 2.64 16
47 H 0.21 4.21 8.06 -2.91 -0.02 4.18 16
48 H 0.19 0.95 8.06 -2.91 -0.02 0.92 16
Total: -1.00 -76.94 382.98 5.00 -71.94
By element:
Atomic # 1 Polarization: 12.50 SS G_CDS: 0.97 Total: 13.47 kcal
Atomic # 6 Polarization: 20.02 SS G_CDS: 8.66 Total: 28.68 kcal
Atomic # 7 Polarization: -130.44 SS G_CDS: -6.60 Total: -137.04 kcal
Atomic # 8 Polarization: -24.56 SS G_CDS: -0.06 Total: -24.62 kcal
Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal
Total: -76.94 5.00 -71.94 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001005586758.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 141.686 kcal
(2) G-P(sol) polarization free energy of solvation -76.935 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.751 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.995 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.940 kcal
(6) G-S(sol) free energy of system = (1) + (5) 69.747 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds