Wall clock time and date at job start Sat Apr 11 2020 06:41:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.40162 * 119.83912 * 2 1
4 4 C 1.36447 * 119.40842 * 180.27108 * 3 2 1
5 5 C 1.40096 * 119.25610 * 359.75032 * 4 3 2
6 6 C 1.40851 * 132.86783 * 180.02562 * 5 4 3
7 7 C 1.46566 * 126.57731 * 359.97438 * 6 5 4
8 8 O 1.21717 * 120.00067 * 0.02562 * 7 6 5
9 9 N 1.34776 * 119.99431 * 179.97438 * 7 6 5
10 10 C 1.46507 * 119.99752 * 180.02562 * 9 7 6
11 11 H 1.08999 * 109.49429 * 325.00117 * 10 9 7
12 12 C 1.53042 * 109.49867 * 204.93549 * 10 9 7
13 13 C 1.53035 * 109.53576 * 178.68448 * 12 10 9
14 14 C 1.53183 * 109.31624 * 61.36787 * 13 12 10
15 15 N 1.46931 * 108.77483 * 305.36545 * 14 13 12
16 16 C 1.36939 * 120.62551 * 233.60799 * 15 14 13
17 17 H 1.07996 * 120.00568 * 36.99575 * 16 15 14
18 18 C 1.38815 * 119.99708 * 216.98510 * 16 15 14
19 19 N 1.31624 * 120.00155 * 16.36311 * 18 16 15
20 20 Si 1.86800 * 120.00049 * 196.36456 * 18 16 15
21 21 H 1.48507 * 109.46946 * 90.00136 * 20 18 16
22 22 H 1.48494 * 109.47337 * 209.99887 * 20 18 16
23 23 H 1.48500 * 109.47230 * 330.00373 * 20 18 16
24 24 C 1.46926 * 118.76759 * 53.58344 * 15 14 13
25 25 C 1.40558 * 106.83815 * 179.97438 * 6 5 4
26 26 N 1.30736 * 108.74663 * 359.97438 * 25 6 5
27 27 N 1.36579 * 120.22612 * 0.02562 * 5 4 3
28 28 C 1.35185 * 119.83935 * 179.76889 * 2 1 3
29 29 C 1.50693 * 119.65048 * 0.02562 * 28 2 1
30 30 H 1.08991 * 109.47369 * 264.91871 * 1 2 3
31 31 H 1.09001 * 109.47062 * 24.92232 * 1 2 3
32 32 H 1.09006 * 109.46860 * 144.91810 * 1 2 3
33 33 H 1.08006 * 120.29654 * 0.02562 * 3 2 1
34 34 H 1.07999 * 120.37305 * 179.73754 * 4 3 2
35 35 H 0.97000 * 120.00735 * 0.02562 * 9 7 6
36 36 H 1.08996 * 109.45918 * 298.70637 * 12 10 9
37 37 H 1.09000 * 109.45640 * 58.66095 * 12 10 9
38 38 H 1.09004 * 109.49825 * 181.32020 * 13 12 10
39 39 H 1.09000 * 109.50072 * 301.38217 * 13 12 10
40 40 H 1.09003 * 109.58798 * 65.15041 * 14 13 12
41 41 H 1.08998 * 109.59060 * 185.43260 * 14 13 12
42 42 H 0.97001 * 120.00161 * 179.97438 * 19 18 16
43 43 H 1.09002 * 109.62155 * 186.64513 * 24 15 14
44 44 H 1.09005 * 109.55863 * 66.21484 * 24 15 14
45 45 H 1.08001 * 125.62575 * 179.97438 * 25 6 5
46 46 H 1.09003 * 109.47031 * 275.14962 * 29 28 2
47 47 H 1.09002 * 109.47628 * 155.14518 * 29 28 2
48 48 H 1.09000 * 109.47001 * 35.14344 * 29 28 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2044 1.2158 0.0000
4 6 3.5688 1.2055 -0.0056
5 6 4.2443 -0.0218 -0.0060
6 6 5.6107 -0.3636 -0.0105
7 6 6.7436 0.5663 -0.0169
8 8 6.5452 1.7672 -0.0183
9 7 8.0050 0.0916 -0.0202
10 6 9.1374 1.0211 -0.0260
11 1 8.8826 1.9012 -0.6164
12 6 10.3602 0.3327 -0.6370
13 6 11.5345 1.3133 -0.6736
14 6 11.8835 1.7394 0.7558
15 7 10.6741 2.2700 1.3997
16 6 10.6793 3.5111 1.9785
17 1 11.2375 4.3164 1.5244
18 6 9.9667 3.7341 3.1487
19 7 9.5582 2.7152 3.8748
20 14 9.5877 5.4804 3.6930
21 1 8.2887 5.9083 3.1142
22 1 9.5098 5.5311 5.1751
23 1 10.6630 6.3901 3.2224
24 6 9.4587 1.4446 1.4107
25 6 5.6793 -1.7675 -0.0076
26 7 4.4633 -2.2475 -0.0013
27 7 3.5420 -1.1932 -0.0012
28 6 2.1797 -1.1726 0.0047
29 6 1.4146 -2.4709 0.0094
30 1 -0.3633 -0.0910 1.0235
31 1 -0.3633 0.9320 -0.4330
32 1 -0.3633 -0.8410 -0.5907
33 1 1.6666 2.1524 0.0004
34 1 4.1219 2.1332 -0.0100
35 1 8.1631 -0.8654 -0.0187
36 1 10.6290 -0.5335 -0.0324
37 1 10.1256 0.0088 -1.6510
38 1 12.3981 0.8297 -1.1302
39 1 11.2577 2.1908 -1.2579
40 1 12.2473 0.8777 1.3155
41 1 12.6541 2.5098 0.7296
42 1 9.0606 2.8710 4.6928
43 1 8.6277 2.0220 1.8160
44 1 9.6246 0.5590 2.0242
45 1 6.5868 -2.3530 -0.0102
46 1 1.1503 -2.7332 1.0338
47 1 2.0336 -3.2590 -0.4193
48 1 0.5064 -2.3595 -0.5830
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001007526816.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:41:39
Heat of formation + Delta-G solvation = 78.772075 kcal
Electronic energy + Delta-G solvation = -29814.737098 eV
Core-core repulsion = 25871.647750 eV
Total energy + Delta-G solvation = -3943.089347 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-42.31299 -39.19907 -38.03469 -37.03631 -34.14005 -33.85372 -32.80553 -32.40801
-30.17267 -29.89900 -28.66574 -28.49474 -26.22972 -25.16744 -23.70062 -22.61220
-22.13546 -21.83852 -21.27599 -19.69817 -19.15898 -17.81891 -16.75844 -16.59029
-16.33923 -16.15045 -15.39294 -15.20812 -14.76023 -14.38127 -14.33569 -14.04832
-13.80515 -13.70942 -13.49720 -13.31109 -13.17272 -13.00688 -12.86724 -12.61726
-12.32329 -12.27152 -12.13509 -11.86520 -11.76418 -11.55522 -10.96875 -10.89772
-10.72083 -10.68077 -10.46647 -10.34329 -10.18223 -9.93976 -9.89657 -9.42060
-9.39795 -9.30133 -8.44557 -8.36460 -7.64831 -6.46985 -5.70723 -3.22911
0.50375 0.83810 1.96164 2.19587 3.04880 3.45598 3.52433 3.52975
3.64251 3.90016 3.98691 4.35984 4.42250 4.50982 4.58523 4.62849
4.90137 4.98868 5.13030 5.17037 5.19542 5.26199 5.35413 5.42361
5.44265 5.49264 5.50941 5.61889 5.67963 5.70521 5.79677 5.98478
6.04596 6.15996 6.21746 6.23391 6.32585 6.42942 6.49529 6.59054
6.68094 6.77995 6.87233 7.04265 7.07955 7.32235 7.35968 7.71432
7.90982 8.09861 8.59411 8.83380 9.29498 9.91029 10.52443 11.36133
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.013144 B = 0.002996 C = 0.002588
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2129.720768 B = 9342.067948 C =10814.525274
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.102 4.102
2 C -0.131 4.131
3 C -0.076 4.076
4 C -0.102 4.102
5 C 0.160 3.840
6 C -0.300 4.300
7 C 0.594 3.406
8 O -0.544 6.544
9 N -0.718 5.718
10 C 0.121 3.879
11 H 0.082 0.918
12 C -0.115 4.115
13 C -0.131 4.131
14 C 0.143 3.857
15 N -0.586 5.586
16 C -0.263 4.263
17 H 0.061 0.939
18 C 0.016 3.984
19 N -0.893 5.893
20 Si 0.899 3.101
21 H -0.285 1.285
22 H -0.291 1.291
23 H -0.277 1.277
24 C 0.173 3.827
25 C 0.115 3.885
26 N -0.322 5.322
27 N -0.263 5.263
28 C 0.131 3.869
29 C -0.115 4.115
30 H 0.076 0.924
31 H 0.074 0.926
32 H 0.073 0.927
33 H 0.145 0.855
34 H 0.164 0.836
35 H 0.389 0.611
36 H 0.059 0.941
37 H 0.050 0.950
38 H 0.054 0.946
39 H 0.059 0.941
40 H 0.017 0.983
41 H 0.055 0.945
42 H 0.253 0.747
43 H 0.077 0.923
44 H 0.019 0.981
45 H 0.197 0.803
46 H 0.086 0.914
47 H 0.082 0.918
48 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.582 -11.453 -10.414 22.684
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.159 4.159
2 C -0.135 4.135
3 C -0.099 4.099
4 C -0.122 4.122
5 C 0.040 3.960
6 C -0.315 4.315
7 C 0.381 3.619
8 O -0.423 6.423
9 N -0.368 5.368
10 C 0.015 3.985
11 H 0.100 0.900
12 C -0.154 4.154
13 C -0.171 4.171
14 C 0.017 3.983
15 N -0.309 5.309
16 C -0.393 4.393
17 H 0.079 0.921
18 C -0.185 4.185
19 N -0.535 5.535
20 Si 0.729 3.271
21 H -0.211 1.211
22 H -0.218 1.218
23 H -0.203 1.203
24 C 0.046 3.954
25 C -0.065 4.065
26 N -0.144 5.144
27 N -0.027 5.027
28 C 0.024 3.976
29 C -0.172 4.172
30 H 0.094 0.906
31 H 0.093 0.907
32 H 0.092 0.908
33 H 0.163 0.837
34 H 0.181 0.819
35 H 0.222 0.778
36 H 0.077 0.923
37 H 0.069 0.931
38 H 0.073 0.927
39 H 0.078 0.922
40 H 0.035 0.965
41 H 0.073 0.927
42 H 0.063 0.937
43 H 0.095 0.905
44 H 0.037 0.963
45 H 0.214 0.786
46 H 0.104 0.896
47 H 0.101 0.899
48 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges -17.373 -11.767 -10.231 23.344
hybrid contribution 0.453 1.013 0.469 1.205
sum -16.919 -10.754 -9.761 22.298
Atomic orbital electron populations
1.20745 0.88672 1.03525 1.02933 1.19350 0.97374 0.90941 1.05790
1.21253 0.93695 0.98116 0.96802 1.20950 0.94085 0.96938 1.00188
1.19316 0.91473 0.87094 0.98151 1.19887 0.91737 0.93411 1.26488
1.16792 0.81829 0.87098 0.76136 1.90794 1.85150 1.15414 1.50904
1.45808 1.05523 1.09756 1.75700 1.21924 0.83300 0.91634 1.01602
0.89957 1.21667 0.95586 0.98710 0.99396 1.22002 0.96437 0.98501
1.00139 1.20968 0.90416 0.96683 0.90282 1.43860 1.04717 1.16997
1.65302 1.19034 1.31022 0.86376 1.02839 0.92142 1.25253 1.01063
0.97017 0.95153 1.70034 1.39945 1.29267 1.14239 0.86357 0.78670
0.84782 0.77326 1.21149 1.21778 1.20274 1.20968 0.90621 0.94362
0.89434 1.24042 0.95891 0.93262 0.93303 1.77465 0.97751 1.07501
1.31635 1.45908 1.05038 1.06032 1.45746 1.19921 0.79073 0.97902
1.00753 1.20930 0.99772 0.92503 1.03964 0.90584 0.90718 0.90831
0.83739 0.81879 0.77781 0.92256 0.93088 0.92717 0.92177 0.96479
0.92662 0.93700 0.90468 0.96280 0.78595 0.89596 0.89874 0.89179
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -0.52 9.46 36.01 0.34 -0.18 16
2 C -0.13 -1.18 5.84 -104.99 -0.61 -1.80 16
3 C -0.08 -0.77 9.73 -39.51 -0.38 -1.16 16
4 C -0.10 -1.42 9.73 -39.53 -0.38 -1.80 16
5 C 0.16 2.50 6.76 -84.07 -0.57 1.93 16
6 C -0.30 -4.89 6.17 -104.68 -0.65 -5.53 16
7 C 0.59 11.30 7.75 -12.90 -0.10 11.20 16
8 O -0.54 -12.48 15.37 5.17 0.08 -12.40 16
9 N -0.72 -12.31 5.07 -55.02 -0.28 -12.59 16
10 C 0.12 2.41 2.60 -67.80 -0.18 2.23 16
11 H 0.08 1.86 7.58 -51.93 -0.39 1.47 16
12 C -0.12 -1.90 5.35 -26.69 -0.14 -2.04 16
13 C -0.13 -2.27 6.08 -26.62 -0.16 -2.43 16
14 C 0.14 3.05 6.51 -3.71 -0.02 3.03 16
15 N -0.59 -15.23 2.93 -172.31 -0.51 -15.74 16
16 C -0.26 -7.54 9.47 -15.06 -0.14 -7.68 16
17 H 0.06 1.71 7.88 -52.49 -0.41 1.29 16
18 C 0.02 0.46 4.87 -17.43 -0.08 0.37 16
19 N -0.89 -27.17 11.86 55.49 0.66 -26.51 16
20 Si 0.90 22.75 29.58 -169.99 -5.03 17.73 16
21 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16
22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16
23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16
24 C 0.17 4.31 4.85 -3.71 -0.02 4.30 16
25 C 0.11 1.53 11.44 -17.14 -0.20 1.34 16
26 N -0.32 -4.51 12.19 30.75 0.37 -4.14 16
27 N -0.26 -3.65 3.85 -6.85 -0.03 -3.67 16
28 C 0.13 1.40 6.81 -81.72 -0.56 0.84 16
29 C -0.11 -0.82 9.50 36.00 0.34 -0.48 16
30 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16
31 H 0.07 0.31 8.05 -51.93 -0.42 -0.11 16
32 H 0.07 0.27 6.12 -51.93 -0.32 -0.05 16
33 H 0.14 1.05 8.06 -52.48 -0.42 0.62 16
34 H 0.16 2.45 7.12 -52.49 -0.37 2.08 16
35 H 0.39 5.21 7.52 -40.82 -0.31 4.91 16
36 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16
37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16
38 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16
39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16
40 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16
41 H 0.05 1.16 7.94 -51.93 -0.41 0.75 16
42 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16
43 H 0.08 2.26 6.74 -51.93 -0.35 1.91 16
44 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16
45 H 0.20 1.83 7.46 -52.49 -0.39 1.44 16
46 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16
47 H 0.08 0.68 7.90 -51.93 -0.41 0.27 16
48 H 0.09 0.41 6.12 -51.93 -0.32 0.09 16
LS Contribution 387.06 15.07 5.83 5.83
Total: -1.00 -36.46 387.06 -9.46 -45.92
By element:
Atomic # 1 Polarization: 10.49 SS G_CDS: -7.05 Total: 3.45 kcal
Atomic # 6 Polarization: 5.64 SS G_CDS: -3.52 Total: 2.13 kcal
Atomic # 7 Polarization: -62.88 SS G_CDS: 0.22 Total: -62.65 kcal
Atomic # 8 Polarization: -12.48 SS G_CDS: 0.08 Total: -12.40 kcal
Atomic # 14 Polarization: 22.75 SS G_CDS: -5.03 Total: 17.73 kcal
Total LS contribution 5.83 Total: 5.83 kcal
Total: -36.46 -9.46 -45.92 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001007526816.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 124.694 kcal
(2) G-P(sol) polarization free energy of solvation -36.464 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.229 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.457 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.921 kcal
(6) G-S(sol) free energy of system = (1) + (5) 78.772 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds