Wall clock time and date at job start Sat Apr 11 2020 06:41:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.40162 * 119.83912 * 2 1
4 4 C 1.36447 * 119.40842 * 180.27108 * 3 2 1
5 5 C 1.40096 * 119.25610 * 359.75032 * 4 3 2
6 6 C 1.40851 * 132.86783 * 180.02562 * 5 4 3
7 7 C 1.46566 * 126.57731 * 359.97438 * 6 5 4
8 8 O 1.21717 * 120.00067 * 0.02562 * 7 6 5
9 9 N 1.34776 * 119.99431 * 179.97438 * 7 6 5
10 10 C 1.46507 * 119.99752 * 180.02562 * 9 7 6
11 11 H 1.08999 * 109.49429 * 325.00117 * 10 9 7
12 12 C 1.53042 * 109.49867 * 204.93549 * 10 9 7
13 13 C 1.53035 * 109.53576 * 178.68448 * 12 10 9
14 14 C 1.53183 * 109.31624 * 61.36787 * 13 12 10
15 15 N 1.46931 * 108.77483 * 305.36545 * 14 13 12
16 16 C 1.36939 * 120.62551 * 233.60799 * 15 14 13
17 17 H 1.07996 * 120.00568 * 36.99575 * 16 15 14
18 18 C 1.38815 * 119.99708 * 216.98510 * 16 15 14
19 19 N 1.31624 * 120.00155 * 16.36311 * 18 16 15
20 20 Si 1.86800 * 120.00049 * 196.36456 * 18 16 15
21 21 H 1.48507 * 109.46946 * 90.00136 * 20 18 16
22 22 H 1.48494 * 109.47337 * 209.99887 * 20 18 16
23 23 H 1.48500 * 109.47230 * 330.00373 * 20 18 16
24 24 C 1.46926 * 118.76759 * 53.58344 * 15 14 13
25 25 C 1.40558 * 106.83815 * 179.97438 * 6 5 4
26 26 N 1.30736 * 108.74663 * 359.97438 * 25 6 5
27 27 N 1.36579 * 120.22612 * 0.02562 * 5 4 3
28 28 C 1.35185 * 119.83935 * 179.76889 * 2 1 3
29 29 C 1.50693 * 119.65048 * 0.02562 * 28 2 1
30 30 H 1.08991 * 109.47369 * 264.91871 * 1 2 3
31 31 H 1.09001 * 109.47062 * 24.92232 * 1 2 3
32 32 H 1.09006 * 109.46860 * 144.91810 * 1 2 3
33 33 H 1.08006 * 120.29654 * 0.02562 * 3 2 1
34 34 H 1.07999 * 120.37305 * 179.73754 * 4 3 2
35 35 H 0.97000 * 120.00735 * 0.02562 * 9 7 6
36 36 H 1.08996 * 109.45918 * 298.70637 * 12 10 9
37 37 H 1.09000 * 109.45640 * 58.66095 * 12 10 9
38 38 H 1.09004 * 109.49825 * 181.32020 * 13 12 10
39 39 H 1.09000 * 109.50072 * 301.38217 * 13 12 10
40 40 H 1.09003 * 109.58798 * 65.15041 * 14 13 12
41 41 H 1.08998 * 109.59060 * 185.43260 * 14 13 12
42 42 H 0.97001 * 120.00161 * 179.97438 * 19 18 16
43 43 H 1.09002 * 109.62155 * 186.64513 * 24 15 14
44 44 H 1.09005 * 109.55863 * 66.21484 * 24 15 14
45 45 H 1.08001 * 125.62575 * 179.97438 * 25 6 5
46 46 H 1.09003 * 109.47031 * 275.14962 * 29 28 2
47 47 H 1.09002 * 109.47628 * 155.14518 * 29 28 2
48 48 H 1.09000 * 109.47001 * 35.14344 * 29 28 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2044 1.2158 0.0000
4 6 3.5688 1.2055 -0.0056
5 6 4.2443 -0.0218 -0.0060
6 6 5.6107 -0.3636 -0.0105
7 6 6.7436 0.5663 -0.0169
8 8 6.5452 1.7672 -0.0183
9 7 8.0050 0.0916 -0.0202
10 6 9.1374 1.0211 -0.0260
11 1 8.8826 1.9012 -0.6164
12 6 10.3602 0.3327 -0.6370
13 6 11.5345 1.3133 -0.6736
14 6 11.8835 1.7394 0.7558
15 7 10.6741 2.2700 1.3997
16 6 10.6793 3.5111 1.9785
17 1 11.2375 4.3164 1.5244
18 6 9.9667 3.7341 3.1487
19 7 9.5582 2.7152 3.8748
20 14 9.5877 5.4804 3.6930
21 1 8.2887 5.9083 3.1142
22 1 9.5098 5.5311 5.1751
23 1 10.6630 6.3901 3.2224
24 6 9.4587 1.4446 1.4107
25 6 5.6793 -1.7675 -0.0076
26 7 4.4633 -2.2475 -0.0013
27 7 3.5420 -1.1932 -0.0012
28 6 2.1797 -1.1726 0.0047
29 6 1.4146 -2.4709 0.0094
30 1 -0.3633 -0.0910 1.0235
31 1 -0.3633 0.9320 -0.4330
32 1 -0.3633 -0.8410 -0.5907
33 1 1.6666 2.1524 0.0004
34 1 4.1219 2.1332 -0.0100
35 1 8.1631 -0.8654 -0.0187
36 1 10.6290 -0.5335 -0.0324
37 1 10.1256 0.0088 -1.6510
38 1 12.3981 0.8297 -1.1302
39 1 11.2577 2.1908 -1.2579
40 1 12.2473 0.8777 1.3155
41 1 12.6541 2.5098 0.7296
42 1 9.0606 2.8710 4.6928
43 1 8.6277 2.0220 1.8160
44 1 9.6246 0.5590 2.0242
45 1 6.5868 -2.3530 -0.0102
46 1 1.1503 -2.7332 1.0338
47 1 2.0336 -3.2590 -0.4193
48 1 0.5064 -2.3595 -0.5830
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001007526816.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:41:38
Heat of formation + Delta-G solvation = 54.149248 kcal
Electronic energy + Delta-G solvation = -29815.804824 eV
Core-core repulsion = 25871.647750 eV
Total energy + Delta-G solvation = -3944.157073 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-43.31665 -40.68427 -39.08263 -38.62832 -35.76823 -34.87859 -34.43155 -33.50368
-31.97334 -31.27551 -29.94382 -29.32932 -27.23035 -27.02873 -24.91838 -23.94956
-23.64612 -22.86673 -22.68859 -21.24597 -20.66502 -18.90324 -18.67935 -17.85581
-17.39819 -17.14208 -16.96619 -16.57322 -16.15878 -15.89306 -15.65738 -15.33321
-15.25323 -14.91874 -14.81698 -14.51050 -14.35769 -14.14179 -13.97420 -13.74236
-13.62953 -13.41885 -13.27115 -12.99176 -12.95219 -12.73587 -12.52628 -12.47529
-12.41651 -12.29024 -12.06097 -11.91389 -11.68407 -11.55817 -11.37743 -11.22742
-10.84412 -10.59877 -10.30923 -10.04906 -8.69529 -8.58097 -7.90226 -5.46737
-0.45464 -0.11493 1.01553 1.05953 1.38563 1.43964 1.50430 2.06839
2.28200 2.48094 2.56786 3.03863 3.24902 3.48315 3.60033 3.70516
3.77422 3.85938 3.92600 4.03661 4.16441 4.22182 4.25650 4.38542
4.42752 4.50820 4.53963 4.55736 4.63953 4.73044 4.83793 4.87375
4.93555 5.00160 5.07814 5.11012 5.15055 5.20473 5.22812 5.25054
5.27067 5.34494 5.43914 5.50251 5.53992 5.63157 5.73211 5.75008
6.30271 6.39691 6.73163 7.12082 7.41990 7.81969 8.37110 9.12570
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.013144 B = 0.002996 C = 0.002588
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2129.720768 B = 9342.067948 C =10814.525274
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.100 4.100
2 C -0.125 4.125
3 C -0.047 4.047
4 C -0.148 4.148
5 C 0.145 3.855
6 C -0.345 4.345
7 C 0.590 3.410
8 O -0.598 6.598
9 N -0.706 5.706
10 C 0.136 3.864
11 H 0.051 0.949
12 C -0.106 4.106
13 C -0.121 4.121
14 C 0.136 3.864
15 N -0.608 5.608
16 C -0.272 4.272
17 H 0.062 0.938
18 C -0.041 4.041
19 N -0.927 5.927
20 Si 0.961 3.039
21 H -0.293 1.293
22 H -0.288 1.288
23 H -0.259 1.259
24 C 0.189 3.811
25 C 0.130 3.870
26 N -0.335 5.335
27 N -0.266 5.266
28 C 0.117 3.883
29 C -0.111 4.111
30 H 0.090 0.910
31 H 0.090 0.910
32 H 0.094 0.906
33 H 0.178 0.822
34 H 0.137 0.863
35 H 0.410 0.590
36 H 0.076 0.924
37 H 0.087 0.913
38 H 0.098 0.902
39 H 0.051 0.949
40 H 0.020 0.980
41 H 0.054 0.946
42 H 0.248 0.752
43 H 0.020 0.980
44 H 0.001 0.999
45 H 0.232 0.768
46 H 0.099 0.901
47 H 0.072 0.928
48 H 0.124 0.876
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.418 -13.235 -11.981 25.650
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C -0.128 4.128
3 C -0.070 4.070
4 C -0.168 4.168
5 C 0.023 3.977
6 C -0.359 4.359
7 C 0.380 3.620
8 O -0.480 6.480
9 N -0.357 5.357
10 C 0.030 3.970
11 H 0.069 0.931
12 C -0.144 4.144
13 C -0.160 4.160
14 C 0.011 3.989
15 N -0.332 5.332
16 C -0.403 4.403
17 H 0.079 0.921
18 C -0.238 4.238
19 N -0.571 5.571
20 Si 0.788 3.212
21 H -0.220 1.220
22 H -0.214 1.214
23 H -0.184 1.184
24 C 0.062 3.938
25 C -0.050 4.050
26 N -0.156 5.156
27 N -0.030 5.030
28 C 0.010 3.990
29 C -0.168 4.168
30 H 0.109 0.891
31 H 0.108 0.892
32 H 0.113 0.887
33 H 0.195 0.805
34 H 0.155 0.845
35 H 0.247 0.753
36 H 0.094 0.906
37 H 0.105 0.895
38 H 0.116 0.884
39 H 0.070 0.930
40 H 0.038 0.962
41 H 0.073 0.927
42 H 0.057 0.943
43 H 0.039 0.961
44 H 0.019 0.981
45 H 0.248 0.752
46 H 0.117 0.883
47 H 0.091 0.909
48 H 0.142 0.858
Dipole moment (debyes) X Y Z Total
from point charges -19.182 -13.609 -11.828 26.326
hybrid contribution 0.829 1.558 0.947 2.003
sum -18.353 -12.051 -10.881 24.504
Atomic orbital electron populations
1.20909 0.84985 1.05403 1.04383 1.19928 0.99654 0.89638 1.03605
1.21737 0.92267 1.00360 0.92622 1.20880 0.95776 0.95725 1.04431
1.19543 0.91854 0.88249 0.98008 1.19686 0.91239 0.94282 1.30735
1.17267 0.82880 0.86878 0.74935 1.90751 1.85939 1.17835 1.53519
1.45573 1.04421 1.10494 1.75170 1.21464 0.85824 0.92018 0.97732
0.93061 1.21640 0.92982 0.98461 1.01312 1.21899 0.98349 0.98786
0.97001 1.21181 0.88628 0.96591 0.92475 1.44150 1.06650 1.16631
1.65733 1.19377 1.30424 0.87836 1.02651 0.92086 1.26036 1.01515
1.00709 0.95576 1.70173 1.41118 1.31190 1.14595 0.85378 0.78281
0.80697 0.76817 1.22021 1.21445 1.18351 1.20646 0.88668 0.92416
0.92113 1.24520 0.96988 0.92108 0.91409 1.77403 0.97898 1.07791
1.32477 1.46173 1.06137 1.05248 1.45398 1.20872 0.78089 1.00291
0.99775 1.21087 1.00265 0.90106 1.05333 0.89147 0.89157 0.88706
0.80507 0.84495 0.75304 0.90572 0.89478 0.88362 0.93025 0.96232
0.92735 0.94326 0.96101 0.98084 0.75154 0.88259 0.90946 0.85791
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -0.56 9.46 71.24 0.67 0.11 16
2 C -0.12 -1.93 5.84 -20.10 -0.12 -2.05 16
3 C -0.05 -0.91 9.73 22.32 0.22 -0.69 16
4 C -0.15 -4.40 9.73 22.30 0.22 -4.19 16
5 C 0.14 4.75 6.76 39.49 0.27 5.02 16
6 C -0.34 -11.84 6.17 -19.90 -0.12 -11.96 16
7 C 0.59 24.12 7.75 86.42 0.67 24.79 16
8 O -0.60 -30.18 15.37 -4.40 -0.07 -30.25 16
9 N -0.71 -25.02 5.07 -446.20 -2.26 -27.28 16
10 C 0.14 5.59 2.60 45.07 0.12 5.71 16
11 H 0.05 2.44 7.58 -2.39 -0.02 2.43 16
12 C -0.11 -3.27 5.35 30.62 0.16 -3.11 16
13 C -0.12 -3.93 6.08 30.67 0.19 -3.75 16
14 C 0.14 5.77 6.51 86.36 0.56 6.34 16
15 N -0.61 -32.74 2.93 -699.08 -2.05 -34.79 16
16 C -0.27 -16.21 9.47 84.03 0.80 -15.41 16
17 H 0.06 3.54 7.88 -2.91 -0.02 3.52 16
18 C -0.04 -2.52 4.87 84.86 0.41 -2.10 16
19 N -0.93 -59.40 11.86 21.65 0.26 -59.14 16
20 Si 0.96 48.65 29.58 68.60 2.03 50.68 16
21 H -0.29 -15.09 7.11 99.48 0.71 -14.39 16
22 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16
23 H -0.26 -12.24 7.11 99.48 0.71 -11.53 16
24 C 0.19 9.94 4.85 86.36 0.42 10.36 16
25 C 0.13 3.46 11.44 85.42 0.98 4.44 16
26 N -0.33 -9.23 12.19 -56.62 -0.69 -9.92 16
27 N -0.27 -7.33 3.85 -175.58 -0.68 -8.00 16
28 C 0.12 2.27 6.81 41.17 0.28 2.55 16
29 C -0.11 -1.25 9.50 71.23 0.68 -0.57 16
30 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16
31 H 0.09 0.30 8.05 -2.39 -0.02 0.28 16
32 H 0.09 0.19 6.12 -2.38 -0.01 0.17 16
33 H 0.18 2.16 8.06 -2.91 -0.02 2.14 16
34 H 0.14 4.70 7.12 -2.91 -0.02 4.68 16
35 H 0.41 10.79 7.52 -92.71 -0.70 10.09 16
36 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16
37 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16
38 H 0.10 2.42 8.14 -2.38 -0.02 2.40 16
39 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16
40 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16
41 H 0.05 2.28 7.94 -2.39 -0.02 2.26 16
42 H 0.25 15.43 8.31 -92.71 -0.77 14.65 16
43 H 0.02 1.30 6.74 -2.39 -0.02 1.29 16
44 H 0.00 0.06 8.14 -2.38 -0.02 0.04 16
45 H 0.23 3.96 7.46 -2.91 -0.02 3.94 16
46 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16
47 H 0.07 1.02 7.90 -2.39 -0.02 1.00 16
48 H 0.12 0.53 6.12 -2.39 -0.01 0.52 16
Total: -1.00 -88.50 387.06 3.22 -85.28
By element:
Atomic # 1 Polarization: 17.65 SS G_CDS: 0.29 Total: 17.93 kcal
Atomic # 6 Polarization: 9.08 SS G_CDS: 6.40 Total: 15.48 kcal
Atomic # 7 Polarization: -133.71 SS G_CDS: -5.42 Total: -139.13 kcal
Atomic # 8 Polarization: -30.18 SS G_CDS: -0.07 Total: -30.25 kcal
Atomic # 14 Polarization: 48.65 SS G_CDS: 2.03 Total: 50.68 kcal
Total: -88.50 3.22 -85.28 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001007526816.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 139.428 kcal
(2) G-P(sol) polarization free energy of solvation -88.503 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.926 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.223 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.279 kcal
(6) G-S(sol) free energy of system = (1) + (5) 54.149 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds