Wall clock time and date at job start Sat Apr 11 2020 06:42:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.39742 * 119.43122 * 2 1
4 4 C 1.38937 * 119.29345 * 179.97438 * 3 2 1
5 5 C 1.47226 * 120.86215 * 179.97438 * 4 3 2
6 6 O 1.21635 * 120.00570 * 180.02562 * 5 4 3
7 7 N 1.34780 * 119.99436 * 0.02562 * 5 4 3
8 8 C 1.46502 * 119.99374 * 179.97438 * 7 5 4
9 9 C 1.53008 * 109.46713 * 180.02562 * 8 7 5
10 10 H 1.09005 * 109.69807 * 299.76486 * 9 8 7
11 11 C 1.52763 * 109.50933 * 179.65239 * 9 8 7
12 12 C 1.53037 * 109.38243 * 185.70064 * 11 9 8
13 13 C 1.53043 * 109.53379 * 61.24069 * 12 11 9
14 14 C 1.53189 * 109.31483 * 298.63086 * 13 12 11
15 15 N 1.46920 * 108.77236 * 54.63607 * 14 13 12
16 16 C 1.36946 * 120.63015 * 126.37061 * 15 14 13
17 17 H 1.07997 * 119.99814 * 212.63005 * 16 15 14
18 18 C 1.38806 * 119.99911 * 32.63271 * 16 15 14
19 19 N 1.31619 * 120.00055 * 10.26868 * 18 16 15
20 20 Si 1.86796 * 120.00174 * 190.27684 * 18 16 15
21 21 H 1.48500 * 109.47329 * 89.99329 * 20 18 16
22 22 H 1.48498 * 109.47609 * 209.99786 * 20 18 16
23 23 H 1.48500 * 109.46909 * 330.00109 * 20 18 16
24 24 C 1.46551 * 118.28002 * 0.25583 * 4 3 2
25 25 N 1.31986 * 132.71916 * 180.38705 * 24 4 3
26 26 C 1.33743 * 109.17088 * 179.57183 * 25 24 4
27 27 C 1.34964 * 108.60676 * 359.75838 * 26 25 24
28 28 N 1.37006 * 107.14740 * 0.02562 * 27 26 25
29 29 C 1.35118 * 119.42576 * 179.97438 * 2 1 3
30 30 H 1.09007 * 109.46954 * 89.99760 * 1 2 3
31 31 H 1.08995 * 109.47562 * 210.00297 * 1 2 3
32 32 H 1.09000 * 109.47178 * 330.00453 * 1 2 3
33 33 H 1.07996 * 120.34706 * 359.95716 * 3 2 1
34 34 H 0.96990 * 120.00328 * 0.02562 * 7 5 4
35 35 H 1.09000 * 109.47335 * 60.00578 * 8 7 5
36 36 H 1.08998 * 109.47583 * 299.99749 * 8 7 5
37 37 H 1.09005 * 109.56189 * 65.66899 * 11 9 8
38 38 H 1.08993 * 109.35896 * 305.61550 * 11 9 8
39 39 H 1.09001 * 109.46329 * 301.21897 * 12 11 9
40 40 H 1.09000 * 109.44721 * 181.25105 * 12 11 9
41 41 H 1.09003 * 109.49409 * 178.67843 * 13 12 11
42 42 H 1.09002 * 109.49915 * 58.59068 * 13 12 11
43 43 H 1.08993 * 109.58643 * 294.85138 * 14 13 12
44 44 H 1.09002 * 109.70618 * 174.49393 * 14 13 12
45 45 H 0.97003 * 120.00142 * 180.02562 * 19 18 16
46 46 H 1.07998 * 125.69856 * 179.76316 * 26 25 24
47 47 H 1.08001 * 126.42540 * 179.97438 * 27 26 25
48 48 H 1.07998 * 119.13630 * 0.02562 * 29 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1936 1.2171 0.0000
4 6 3.5830 1.2137 0.0005
5 6 4.3413 2.4757 0.0000
6 8 5.5574 2.4546 0.0000
7 7 3.6877 3.6545 -0.0005
8 6 4.4423 4.9102 -0.0005
9 6 3.4684 6.0903 -0.0005
10 1 2.8416 6.0494 -0.8914
11 6 4.2542 7.4003 0.0083
12 6 3.2829 8.5742 0.1516
13 6 2.5266 8.4537 1.4767
14 6 1.7171 7.1532 1.4816
15 7 2.6230 6.0314 1.1997
16 6 2.6824 4.9538 2.0427
17 1 3.6140 4.4243 2.1773
18 6 1.5453 4.5421 2.7240
19 7 0.3718 5.0506 2.4135
20 14 1.6806 3.2665 4.0819
21 1 1.9100 3.9486 5.3809
22 1 0.4222 2.4812 4.1507
23 1 2.8175 2.3556 3.7938
24 6 4.2742 -0.0785 -0.0047
25 7 5.5516 -0.4107 0.0010
26 6 5.6587 -1.7439 0.0012
27 6 4.4182 -2.2755 0.0009
28 7 3.5312 -1.2313 0.0000
29 6 2.1708 -1.1769 0.0005
30 1 -0.3633 0.0000 -1.0277
31 1 -0.3634 -0.8899 0.5138
32 1 -0.3633 0.8900 0.5138
33 1 1.6500 2.1503 -0.0007
34 1 2.7180 3.6714 -0.0002
35 1 5.0701 4.9569 -0.8903
36 1 5.0695 4.9573 0.8897
37 1 4.8092 7.4992 -0.9247
38 1 4.9496 7.3988 0.8475
39 1 2.5722 8.5607 -0.6747
40 1 3.8406 9.5107 0.1357
41 1 1.8520 9.3026 1.5890
42 1 3.2383 8.4425 2.3022
43 1 0.9446 7.2007 0.7141
44 1 1.2538 7.0123 2.4581
45 1 -0.4229 4.7632 2.8899
46 1 6.5834 -2.3018 0.0016
47 1 4.1710 -3.3269 0.0006
48 1 1.6075 -2.0983 0.0005
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001024573201.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:42:38
Heat of formation + Delta-G solvation = 77.388643 kcal
Electronic energy + Delta-G solvation = -30914.426918 eV
Core-core repulsion = 26971.277581 eV
Total energy + Delta-G solvation = -3943.149338 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-42.59099 -39.20776 -37.80273 -37.41064 -34.11631 -33.45169 -33.09830 -32.04023
-30.65803 -29.93423 -28.71410 -26.71938 -26.11343 -25.05119 -23.83425 -22.20700
-22.05367 -21.45266 -20.68762 -19.94602 -19.11047 -17.86288 -17.14718 -16.52621
-16.08390 -15.86944 -15.55478 -15.28515 -14.81999 -14.26570 -14.04068 -13.98404
-13.67254 -13.60906 -13.52584 -13.44501 -13.31045 -12.84743 -12.56171 -12.44654
-12.14618 -12.00447 -11.95108 -11.74877 -11.37349 -11.21301 -10.96608 -10.83107
-10.57181 -10.52830 -10.28595 -10.14496 -10.00507 -9.87951 -9.55755 -9.45470
-9.22503 -8.63177 -8.60465 -8.21489 -7.76969 -6.67125 -5.88230 -3.36755
0.45338 1.34562 2.56840 2.87195 3.19877 3.28437 3.36393 3.42987
3.73873 4.02649 4.22688 4.38496 4.41130 4.60710 4.80041 4.95475
5.22271 5.25375 5.28905 5.37314 5.45404 5.50706 5.51701 5.56335
5.64368 5.68993 5.85905 5.89611 5.97442 5.98560 6.06641 6.14491
6.17425 6.34498 6.36784 6.42831 6.48189 6.60714 6.69642 6.70935
6.73364 6.85701 6.98528 7.07476 7.19326 7.37732 7.65202 7.76394
8.06676 8.27152 8.38542 8.89933 9.13499 9.73551 10.32343 11.17864
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.012511 B = 0.004152 C = 0.003552
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2237.425578 B = 6742.514424 C = 7880.831403
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.106 4.106
2 C -0.111 4.111
3 C -0.052 4.052
4 C -0.078 4.078
5 C 0.553 3.447
6 O -0.527 6.527
7 N -0.689 5.689
8 C 0.136 3.864
9 C 0.161 3.839
10 H 0.033 0.967
11 C -0.128 4.128
12 C -0.107 4.107
13 C -0.145 4.145
14 C 0.173 3.827
15 N -0.589 5.589
16 C -0.247 4.247
17 H 0.070 0.930
18 C 0.011 3.989
19 N -0.900 5.900
20 Si 0.884 3.116
21 H -0.286 1.286
22 H -0.289 1.289
23 H -0.277 1.277
24 C 0.253 3.747
25 N -0.461 5.461
26 C 0.023 3.977
27 C -0.106 4.106
28 N -0.369 5.369
29 C 0.063 3.937
30 H 0.076 0.924
31 H 0.068 0.932
32 H 0.083 0.917
33 H 0.157 0.843
34 H 0.412 0.588
35 H 0.058 0.942
36 H 0.067 0.933
37 H 0.052 0.948
38 H 0.061 0.939
39 H 0.052 0.948
40 H 0.044 0.956
41 H 0.045 0.955
42 H 0.052 0.948
43 H 0.018 0.982
44 H 0.086 0.914
45 H 0.254 0.746
46 H 0.179 0.821
47 H 0.181 0.819
48 H 0.161 0.839
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.240 -8.489 -6.852 10.980
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C -0.114 4.114
3 C -0.076 4.076
4 C -0.084 4.084
5 C 0.338 3.662
6 O -0.404 6.404
7 N -0.341 5.341
8 C 0.013 3.987
9 C 0.054 3.946
10 H 0.050 0.950
11 C -0.168 4.168
12 C -0.145 4.145
13 C -0.184 4.184
14 C 0.048 3.952
15 N -0.313 5.313
16 C -0.377 4.377
17 H 0.088 0.912
18 C -0.188 4.188
19 N -0.544 5.544
20 Si 0.714 3.286
21 H -0.213 1.213
22 H -0.215 1.215
23 H -0.202 1.202
24 C 0.006 3.994
25 N -0.179 5.179
26 C -0.128 4.128
27 C -0.236 4.236
28 N -0.041 5.041
29 C -0.060 4.060
30 H 0.095 0.905
31 H 0.087 0.913
32 H 0.102 0.898
33 H 0.174 0.826
34 H 0.250 0.750
35 H 0.076 0.924
36 H 0.086 0.914
37 H 0.071 0.929
38 H 0.079 0.921
39 H 0.071 0.929
40 H 0.063 0.937
41 H 0.064 0.936
42 H 0.071 0.929
43 H 0.036 0.964
44 H 0.104 0.896
45 H 0.064 0.936
46 H 0.196 0.804
47 H 0.198 0.802
48 H 0.179 0.821
Dipole moment (debyes) X Y Z Total
from point charges 0.146 -8.077 -6.777 10.545
hybrid contribution -1.192 -1.373 0.995 2.073
sum -1.046 -9.450 -5.783 11.128
Atomic orbital electron populations
1.20743 0.88566 1.04041 1.03021 1.19332 0.97630 0.91266 1.03205
1.21806 0.92298 0.99109 0.94429 1.20335 0.92283 0.90338 1.05459
1.17480 0.87260 0.82952 0.78532 1.90822 1.12781 1.87211 1.49621
1.45866 1.11374 1.04389 1.72461 1.21312 0.94071 0.82385 1.00971
1.20656 0.91417 0.91455 0.91085 0.94995 1.21869 0.98138 0.96122
1.00638 1.21360 0.97940 0.96771 0.98405 1.22205 0.99559 1.00139
0.96513 1.20775 0.90004 0.83009 1.01420 1.44071 1.45970 1.18644
1.22611 1.19248 0.93824 1.05904 1.18740 0.91241 1.25059 0.95157
0.98403 1.00180 1.69982 0.97453 1.45227 1.41775 0.86544 0.77155
0.81829 0.83068 1.21319 1.21523 1.20214 1.21597 0.86735 0.86272
1.04751 1.70827 1.14116 1.12598 1.20371 1.22645 0.96940 0.90632
1.02594 1.22583 0.89192 0.92922 1.18898 1.42837 1.05932 1.08762
1.46534 1.21351 0.81211 1.00174 1.03253 0.90495 0.91267 0.89843
0.82569 0.74961 0.92410 0.91427 0.92939 0.92059 0.92882 0.93736
0.93581 0.92869 0.96369 0.89587 0.93615 0.80372 0.80184 0.82148
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.01 9.97 36.00 0.36 -0.65 16
2 C -0.11 -1.41 5.82 -105.17 -0.61 -2.02 16
3 C -0.05 -0.82 9.26 -38.76 -0.36 -1.18 16
4 C -0.08 -1.47 6.06 -102.64 -0.62 -2.10 16
5 C 0.55 11.60 7.77 -12.61 -0.10 11.50 16
6 O -0.53 -12.68 16.20 5.25 0.08 -12.60 16
7 N -0.69 -13.49 3.82 -61.44 -0.23 -13.73 16
8 C 0.14 2.61 4.42 -4.04 -0.02 2.59 16
9 C 0.16 3.05 3.00 -67.82 -0.20 2.84 16
10 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16
11 C -0.13 -2.13 5.34 -26.83 -0.14 -2.27 16
12 C -0.11 -1.73 5.89 -26.69 -0.16 -1.88 16
13 C -0.14 -2.64 6.08 -26.61 -0.16 -2.80 16
14 C 0.17 3.79 5.25 -3.72 -0.02 3.77 16
15 N -0.59 -13.06 2.97 -165.03 -0.49 -13.55 16
16 C -0.25 -6.02 6.92 -15.06 -0.10 -6.12 16
17 H 0.07 1.79 5.91 -52.49 -0.31 1.48 16
18 C 0.01 0.28 5.05 -17.43 -0.09 0.19 16
19 N -0.90 -23.19 11.12 55.49 0.62 -22.58 16
20 Si 0.88 20.72 29.57 -169.99 -5.03 15.70 16
21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16
22 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16
23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
24 C 0.25 4.78 7.67 -154.13 -1.18 3.60 16
25 N -0.46 -9.08 10.70 -11.32 -0.12 -9.20 16
26 C 0.02 0.33 11.83 -17.88 -0.21 0.12 16
27 C -0.11 -1.33 11.76 -16.40 -0.19 -1.52 16
28 N -0.37 -5.47 2.94 -61.09 -0.18 -5.65 16
29 C 0.06 0.75 10.48 -16.75 -0.18 0.58 16
30 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16
31 H 0.07 0.53 8.05 -51.93 -0.42 0.11 16
32 H 0.08 0.89 8.08 -51.93 -0.42 0.48 16
33 H 0.16 2.39 6.48 -52.49 -0.34 2.05 16
34 H 0.41 8.01 5.48 -40.82 -0.22 7.78 16
35 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16
36 H 0.07 1.43 7.42 -51.93 -0.39 1.04 16
37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16
38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16
39 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16
40 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16
41 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16
42 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16
43 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16
44 H 0.09 2.14 6.18 -51.93 -0.32 1.82 16
45 H 0.25 6.44 8.31 -40.82 -0.34 6.10 16
46 H 0.18 1.93 8.06 -52.49 -0.42 1.51 16
47 H 0.18 1.44 8.06 -52.49 -0.42 1.02 16
48 H 0.16 1.25 8.04 -52.49 -0.42 0.83 16
LS Contribution 382.69 15.07 5.77 5.77
Total: -1.00 -31.97 382.69 -10.62 -42.59
By element:
Atomic # 1 Polarization: 15.66 SS G_CDS: -7.05 Total: 8.61 kcal
Atomic # 6 Polarization: 8.63 SS G_CDS: -3.99 Total: 4.64 kcal
Atomic # 7 Polarization: -64.30 SS G_CDS: -0.41 Total: -64.71 kcal
Atomic # 8 Polarization: -12.68 SS G_CDS: 0.08 Total: -12.60 kcal
Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.70 kcal
Total LS contribution 5.77 Total: 5.77 kcal
Total: -31.97 -10.62 -42.59 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001024573201.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 119.981 kcal
(2) G-P(sol) polarization free energy of solvation -31.972 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.009 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.620 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.593 kcal
(6) G-S(sol) free energy of system = (1) + (5) 77.389 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds