Wall clock time and date at job start Sat Apr 11 2020 06:42:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.39742 * 119.43122 * 2 1
4 4 C 1.38937 * 119.29345 * 179.97438 * 3 2 1
5 5 C 1.47226 * 120.86215 * 179.97438 * 4 3 2
6 6 O 1.21635 * 120.00570 * 180.02562 * 5 4 3
7 7 N 1.34780 * 119.99436 * 0.02562 * 5 4 3
8 8 C 1.46502 * 119.99374 * 179.97438 * 7 5 4
9 9 C 1.53008 * 109.46713 * 180.02562 * 8 7 5
10 10 H 1.09005 * 109.69807 * 299.76486 * 9 8 7
11 11 C 1.52763 * 109.50933 * 179.65239 * 9 8 7
12 12 C 1.53037 * 109.38243 * 185.70064 * 11 9 8
13 13 C 1.53043 * 109.53379 * 61.24069 * 12 11 9
14 14 C 1.53189 * 109.31483 * 298.63086 * 13 12 11
15 15 N 1.46920 * 108.77236 * 54.63607 * 14 13 12
16 16 C 1.36946 * 120.63015 * 126.37061 * 15 14 13
17 17 H 1.07997 * 119.99814 * 212.63005 * 16 15 14
18 18 C 1.38806 * 119.99911 * 32.63271 * 16 15 14
19 19 N 1.31619 * 120.00055 * 10.26868 * 18 16 15
20 20 Si 1.86796 * 120.00174 * 190.27684 * 18 16 15
21 21 H 1.48500 * 109.47329 * 89.99329 * 20 18 16
22 22 H 1.48498 * 109.47609 * 209.99786 * 20 18 16
23 23 H 1.48500 * 109.46909 * 330.00109 * 20 18 16
24 24 C 1.46551 * 118.28002 * 0.25583 * 4 3 2
25 25 N 1.31986 * 132.71916 * 180.38705 * 24 4 3
26 26 C 1.33743 * 109.17088 * 179.57183 * 25 24 4
27 27 C 1.34964 * 108.60676 * 359.75838 * 26 25 24
28 28 N 1.37006 * 107.14740 * 0.02562 * 27 26 25
29 29 C 1.35118 * 119.42576 * 179.97438 * 2 1 3
30 30 H 1.09007 * 109.46954 * 89.99760 * 1 2 3
31 31 H 1.08995 * 109.47562 * 210.00297 * 1 2 3
32 32 H 1.09000 * 109.47178 * 330.00453 * 1 2 3
33 33 H 1.07996 * 120.34706 * 359.95716 * 3 2 1
34 34 H 0.96990 * 120.00328 * 0.02562 * 7 5 4
35 35 H 1.09000 * 109.47335 * 60.00578 * 8 7 5
36 36 H 1.08998 * 109.47583 * 299.99749 * 8 7 5
37 37 H 1.09005 * 109.56189 * 65.66899 * 11 9 8
38 38 H 1.08993 * 109.35896 * 305.61550 * 11 9 8
39 39 H 1.09001 * 109.46329 * 301.21897 * 12 11 9
40 40 H 1.09000 * 109.44721 * 181.25105 * 12 11 9
41 41 H 1.09003 * 109.49409 * 178.67843 * 13 12 11
42 42 H 1.09002 * 109.49915 * 58.59068 * 13 12 11
43 43 H 1.08993 * 109.58643 * 294.85138 * 14 13 12
44 44 H 1.09002 * 109.70618 * 174.49393 * 14 13 12
45 45 H 0.97003 * 120.00142 * 180.02562 * 19 18 16
46 46 H 1.07998 * 125.69856 * 179.76316 * 26 25 24
47 47 H 1.08001 * 126.42540 * 179.97438 * 27 26 25
48 48 H 1.07998 * 119.13630 * 0.02562 * 29 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1936 1.2171 0.0000
4 6 3.5830 1.2137 0.0005
5 6 4.3413 2.4757 0.0000
6 8 5.5574 2.4546 0.0000
7 7 3.6877 3.6545 -0.0005
8 6 4.4423 4.9102 -0.0005
9 6 3.4684 6.0903 -0.0005
10 1 2.8416 6.0494 -0.8914
11 6 4.2542 7.4003 0.0083
12 6 3.2829 8.5742 0.1516
13 6 2.5266 8.4537 1.4767
14 6 1.7171 7.1532 1.4816
15 7 2.6230 6.0314 1.1997
16 6 2.6824 4.9538 2.0427
17 1 3.6140 4.4243 2.1773
18 6 1.5453 4.5421 2.7240
19 7 0.3718 5.0506 2.4135
20 14 1.6806 3.2665 4.0819
21 1 1.9100 3.9486 5.3809
22 1 0.4222 2.4812 4.1507
23 1 2.8175 2.3556 3.7938
24 6 4.2742 -0.0785 -0.0047
25 7 5.5516 -0.4107 0.0010
26 6 5.6587 -1.7439 0.0012
27 6 4.4182 -2.2755 0.0009
28 7 3.5312 -1.2313 0.0000
29 6 2.1708 -1.1769 0.0005
30 1 -0.3633 0.0000 -1.0277
31 1 -0.3634 -0.8899 0.5138
32 1 -0.3633 0.8900 0.5138
33 1 1.6500 2.1503 -0.0007
34 1 2.7180 3.6714 -0.0002
35 1 5.0701 4.9569 -0.8903
36 1 5.0695 4.9573 0.8897
37 1 4.8092 7.4992 -0.9247
38 1 4.9496 7.3988 0.8475
39 1 2.5722 8.5607 -0.6747
40 1 3.8406 9.5107 0.1357
41 1 1.8520 9.3026 1.5890
42 1 3.2383 8.4425 2.3022
43 1 0.9446 7.2007 0.7141
44 1 1.2538 7.0123 2.4581
45 1 -0.4229 4.7632 2.8899
46 1 6.5834 -2.3018 0.0016
47 1 4.1710 -3.3269 0.0006
48 1 1.6075 -2.0983 0.0005
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001024573201.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:42:37
Heat of formation + Delta-G solvation = 59.200564 kcal
Electronic energy + Delta-G solvation = -30915.215612 eV
Core-core repulsion = 26971.277581 eV
Total energy + Delta-G solvation = -3943.938032 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-43.71298 -40.78600 -39.30730 -38.62234 -35.71656 -34.90485 -34.65836 -33.16059
-32.17356 -31.65757 -29.87451 -27.75182 -27.60135 -26.69225 -25.16809 -23.80431
-23.33658 -22.49536 -22.21504 -21.42582 -20.67028 -19.11699 -18.54853 -17.99268
-17.55221 -17.34277 -16.94952 -16.67943 -16.07858 -15.98748 -15.68808 -15.29131
-15.06811 -14.89767 -14.84062 -14.57445 -14.48375 -14.32655 -14.05716 -13.61388
-13.54052 -13.45757 -13.19155 -12.89271 -12.86190 -12.83440 -12.57424 -12.44287
-12.33667 -12.03577 -11.79717 -11.76515 -11.51426 -11.23560 -11.08807 -11.04633
-10.79081 -10.51773 -9.90159 -9.68282 -8.90638 -8.52127 -7.82406 -5.31086
-0.71957 0.23227 1.35160 1.41416 1.49195 1.50415 1.70449 1.94488
2.31573 2.47442 2.62336 3.09652 3.31569 3.38911 3.57595 3.60983
3.77145 3.86201 4.00513 4.22978 4.27201 4.31152 4.40968 4.43690
4.45463 4.55636 4.57127 4.65621 4.71405 4.75041 4.81853 4.86405
4.88870 5.01349 5.14845 5.16431 5.18366 5.23565 5.29826 5.38851
5.46530 5.47989 5.60393 5.62508 5.66644 5.76680 5.87647 6.03874
6.46929 6.66888 6.94755 7.21756 7.30770 7.88714 8.42571 9.21336
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.012511 B = 0.004152 C = 0.003552
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2237.425578 B = 6742.514424 C = 7880.831403
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.101 4.101
2 C -0.128 4.128
3 C -0.035 4.035
4 C -0.130 4.130
5 C 0.550 3.450
6 O -0.571 6.571
7 N -0.685 5.685
8 C 0.140 3.860
9 C 0.163 3.837
10 H 0.038 0.962
11 C -0.124 4.124
12 C -0.101 4.101
13 C -0.137 4.137
14 C 0.178 3.822
15 N -0.600 5.600
16 C -0.236 4.236
17 H 0.051 0.949
18 C -0.018 4.018
19 N -0.916 5.916
20 Si 0.925 3.075
21 H -0.295 1.295
22 H -0.278 1.278
23 H -0.294 1.294
24 C 0.218 3.782
25 N -0.520 5.520
26 C -0.004 4.004
27 C -0.077 4.077
28 N -0.373 5.373
29 C 0.086 3.914
30 H 0.096 0.904
31 H 0.098 0.902
32 H 0.065 0.935
33 H 0.150 0.850
34 H 0.411 0.589
35 H 0.072 0.928
36 H 0.041 0.959
37 H 0.082 0.918
38 H 0.050 0.950
39 H 0.060 0.940
40 H 0.073 0.927
41 H 0.065 0.935
42 H 0.042 0.958
43 H 0.006 0.994
44 H 0.052 0.948
45 H 0.251 0.749
46 H 0.206 0.794
47 H 0.236 0.764
48 H 0.218 0.782
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.703 -10.309 -7.902 13.267
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C -0.131 4.131
3 C -0.059 4.059
4 C -0.136 4.136
5 C 0.337 3.663
6 O -0.453 6.453
7 N -0.336 5.336
8 C 0.016 3.984
9 C 0.057 3.943
10 H 0.056 0.944
11 C -0.163 4.163
12 C -0.139 4.139
13 C -0.176 4.176
14 C 0.053 3.947
15 N -0.325 5.325
16 C -0.367 4.367
17 H 0.069 0.931
18 C -0.215 4.215
19 N -0.562 5.562
20 Si 0.756 3.244
21 H -0.223 1.223
22 H -0.203 1.203
23 H -0.221 1.221
24 C -0.029 4.029
25 N -0.240 5.240
26 C -0.152 4.152
27 C -0.206 4.206
28 N -0.045 5.045
29 C -0.036 4.036
30 H 0.115 0.885
31 H 0.116 0.884
32 H 0.084 0.916
33 H 0.168 0.832
34 H 0.250 0.750
35 H 0.091 0.909
36 H 0.060 0.940
37 H 0.100 0.900
38 H 0.069 0.931
39 H 0.079 0.921
40 H 0.091 0.909
41 H 0.084 0.916
42 H 0.061 0.939
43 H 0.024 0.976
44 H 0.071 0.929
45 H 0.061 0.939
46 H 0.223 0.777
47 H 0.253 0.747
48 H 0.234 0.766
Dipole moment (debyes) X Y Z Total
from point charges -1.333 -9.885 -7.837 12.685
hybrid contribution -0.728 -0.912 1.303 1.749
sum -2.061 -10.797 -6.535 12.787
Atomic orbital electron populations
1.20790 0.85905 1.04598 1.04472 1.19695 0.99363 0.90306 1.03784
1.21950 0.91237 1.00575 0.92154 1.20153 0.93327 0.89661 1.10416
1.17937 0.87006 0.84022 0.77345 1.90765 1.14577 1.87934 1.51986
1.45846 1.11211 1.04457 1.72112 1.21295 0.94072 0.82609 1.00378
1.20786 0.91079 0.92695 0.89783 0.94413 1.21834 0.97955 0.94736
1.01781 1.21338 0.97873 0.97645 0.97038 1.22074 0.99352 0.98508
0.97684 1.20604 0.90241 0.84783 0.99048 1.44218 1.46415 1.18346
1.23539 1.19110 0.92855 1.05943 1.18754 0.93139 1.25328 0.95167
0.99579 1.01439 1.70055 0.97541 1.46110 1.42495 0.85941 0.76645
0.80459 0.81374 1.22300 1.20348 1.22089 1.21549 0.87264 0.87373
1.06678 1.70710 1.15551 1.15566 1.22145 1.23287 0.99431 0.89316
1.03195 1.23437 0.87855 0.94368 1.14949 1.43142 1.07068 1.08106
1.46199 1.22239 0.80166 1.01996 0.99209 0.88542 0.88378 0.91601
0.83249 0.75003 0.90939 0.94012 0.89994 0.93110 0.92122 0.90862
0.91627 0.93937 0.97586 0.92945 0.93895 0.77702 0.74737 0.76582
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -1.59 9.97 71.23 0.71 -0.88 16
2 C -0.13 -2.98 5.82 -20.22 -0.12 -3.10 16
3 C -0.04 -1.12 9.26 22.80 0.21 -0.91 16
4 C -0.13 -5.13 6.06 -18.58 -0.11 -5.24 16
5 C 0.55 24.72 7.77 86.60 0.67 25.40 16
6 O -0.57 -29.64 16.20 -4.14 -0.07 -29.71 16
7 N -0.69 -28.45 3.82 -466.53 -1.78 -30.23 16
8 C 0.14 5.60 4.42 86.38 0.38 5.98 16
9 C 0.16 6.18 3.00 44.83 0.13 6.32 16
10 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16
11 C -0.12 -3.93 5.34 30.53 0.16 -3.77 16
12 C -0.10 -3.01 5.89 30.62 0.18 -2.83 16
13 C -0.14 -4.84 6.08 30.67 0.19 -4.66 16
14 C 0.18 7.90 5.25 86.36 0.45 8.35 16
15 N -0.60 -27.23 2.97 -676.04 -2.01 -29.24 16
16 C -0.24 -11.91 6.92 84.03 0.58 -11.33 16
17 H 0.05 2.75 5.91 -2.91 -0.02 2.73 16
18 C -0.02 -0.92 5.05 84.86 0.43 -0.49 16
19 N -0.92 -48.21 11.12 21.65 0.24 -47.97 16
20 Si 0.93 43.78 29.57 68.60 2.03 45.81 16
21 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16
22 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16
23 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16
24 C 0.22 8.41 7.67 135.76 1.04 9.45 16
25 N -0.52 -21.19 10.70 -189.72 -2.03 -23.22 16
26 C 0.00 -0.10 11.83 83.65 0.99 0.89 16
27 C -0.08 -1.67 11.76 83.13 0.98 -0.69 16
28 N -0.37 -10.22 2.94 -347.19 -1.02 -11.24 16
29 C 0.09 1.72 10.48 83.30 0.87 2.60 16
30 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16
31 H 0.10 1.01 8.05 -2.39 -0.02 0.99 16
32 H 0.06 1.30 8.08 -2.39 -0.02 1.28 16
33 H 0.15 4.80 6.48 -2.91 -0.02 4.78 16
34 H 0.41 16.90 5.48 -92.72 -0.51 16.40 16
35 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16
36 H 0.04 1.87 7.42 -2.39 -0.02 1.85 16
37 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16
38 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16
39 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16
40 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16
41 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16
42 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16
43 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16
44 H 0.05 2.67 6.18 -2.39 -0.01 2.65 16
45 H 0.25 12.95 8.31 -92.71 -0.77 12.18 16
46 H 0.21 4.18 8.06 -2.91 -0.02 4.16 16
47 H 0.24 2.28 8.06 -2.91 -0.02 2.26 16
48 H 0.22 1.87 8.04 -2.91 -0.02 1.85 16
Total: -1.00 -76.19 382.69 3.58 -72.60
By element:
Atomic # 1 Polarization: 27.65 SS G_CDS: 0.47 Total: 28.12 kcal
Atomic # 6 Polarization: 17.33 SS G_CDS: 7.75 Total: 25.08 kcal
Atomic # 7 Polarization: -135.30 SS G_CDS: -6.60 Total: -141.91 kcal
Atomic # 8 Polarization: -29.64 SS G_CDS: -0.07 Total: -29.71 kcal
Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal
Total: -76.19 3.58 -72.60 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001024573201.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 131.804 kcal
(2) G-P(sol) polarization free energy of solvation -76.187 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.617 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.584 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.603 kcal
(6) G-S(sol) free energy of system = (1) + (5) 59.201 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds