Wall clock time and date at job start Sat Apr 11 2020 06:41:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 C 1.36316 * 119.74966 * 2 1
4 4 C 1.47528 * 120.16733 * 359.97027 * 3 2 1
5 5 O 1.21601 * 119.99887 * 353.75039 * 4 3 2
6 6 N 1.34774 * 119.99989 * 173.74856 * 4 3 2
7 7 C 1.46501 * 119.99623 * 180.02562 * 6 4 3
8 8 H 1.08997 * 109.46442 * 35.03018 * 7 6 4
9 9 C 1.53045 * 109.46279 * 275.06638 * 7 6 4
10 10 C 1.52760 * 109.38407 * 301.22381 * 9 7 6
11 11 N 1.46923 * 109.00931 * 305.58551 * 10 9 7
12 12 C 1.36932 * 120.63265 * 233.58703 * 11 10 9
13 13 H 1.08003 * 120.00406 * 148.39897 * 12 11 10
14 14 C 1.38816 * 119.99834 * 328.39813 * 12 11 10
15 15 N 1.31622 * 119.99860 * 337.75639 * 14 12 11
16 16 Si 1.86799 * 120.00039 * 157.75758 * 14 12 11
17 17 H 1.48498 * 109.47068 * 179.97438 * 16 14 12
18 18 H 1.48491 * 109.47076 * 299.99872 * 16 14 12
19 19 H 1.48500 * 109.47074 * 60.00402 * 16 14 12
20 20 C 1.46929 * 118.73813 * 53.30846 * 11 10 9
21 21 H 1.08998 * 109.58517 * 66.57582 * 20 11 10
22 22 C 1.53003 * 109.58659 * 186.85515 * 20 11 10
23 23 C 1.53046 * 109.45926 * 155.00179 * 7 6 4
24 24 C 1.46503 * 119.66945 * 180.25256 * 3 2 1
25 25 C 1.35538 * 119.04451 * 359.45521 * 24 3 2
26 26 C 1.41227 * 119.42243 * 0.53621 * 25 24 3
27 27 C 1.37913 * 132.96959 * 179.73378 * 26 25 24
28 28 N 1.33447 * 107.65870 * 179.97438 * 27 26 25
29 29 C 1.30746 * 109.93959 * 0.02562 * 28 27 26
30 30 N 1.35926 * 109.20379 * 359.97438 * 29 28 27
31 31 H 1.08997 * 109.46927 * 84.07774 * 1 2 3
32 32 H 1.08994 * 109.47173 * 204.07921 * 1 2 3
33 33 H 1.09000 * 109.46632 * 324.07766 * 1 2 3
34 34 H 0.96994 * 120.00390 * 0.02562 * 6 4 3
35 35 H 1.09004 * 109.49311 * 61.30020 * 9 7 6
36 36 H 1.09000 * 109.49736 * 181.39403 * 9 7 6
37 37 H 1.08998 * 109.50910 * 185.69874 * 10 9 7
38 38 H 1.09005 * 109.42993 * 65.42041 * 10 9 7
39 39 H 0.97003 * 120.00005 * 354.02084 * 15 14 12
40 40 H 1.09002 * 109.47153 * 60.00386 * 22 20 11
41 41 H 1.09003 * 109.47318 * 179.97438 * 22 20 11
42 42 H 1.08994 * 109.47453 * 300.00063 * 22 20 11
43 43 H 1.09003 * 109.49828 * 298.70603 * 23 7 6
44 44 H 1.09003 * 109.50033 * 178.60582 * 23 7 6
45 45 H 1.07994 * 120.47997 * 179.74870 * 24 3 2
46 46 H 1.07990 * 120.28751 * 180.24564 * 25 24 3
47 47 H 1.07997 * 126.16884 * 359.97438 * 27 26 25
48 48 H 1.07997 * 125.39896 * 180.02562 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.1835 1.1835 0.0000
4 6 1.4440 2.4601 -0.0007
5 8 0.2334 2.4614 -0.1158
6 7 2.1101 3.6248 0.1264
7 6 1.3756 4.8924 0.1263
8 1 0.4141 4.7551 0.6210
9 6 1.1459 5.3485 -1.3164
10 6 2.4933 5.5104 -2.0176
11 7 3.3391 6.4142 -1.2261
12 6 3.9141 7.5152 -1.8026
13 1 4.0816 8.4065 -1.2162
14 6 4.2818 7.4856 -3.1409
15 7 4.4966 6.3330 -3.7390
16 14 4.4719 9.0816 -4.0927
17 1 4.8689 8.7795 -5.4914
18 1 3.1809 9.8153 -4.0916
19 1 5.5177 9.9187 -3.4518
20 6 3.5512 6.1177 0.1972
21 1 4.1255 5.1967 0.2969
22 6 4.3133 7.2708 0.8533
23 6 2.1874 5.9520 0.8749
24 6 3.6485 1.1815 -0.0056
25 6 4.3049 -0.0044 0.0005
26 6 3.5646 -1.2071 0.0007
27 6 3.9313 -2.5366 0.0013
28 7 2.8131 -3.2649 0.0017
29 6 1.7687 -2.4784 0.0008
30 7 2.1837 -1.1840 0.0004
31 1 -0.3633 0.1060 -1.0222
32 1 -0.3633 -0.9382 0.4193
33 1 -0.3632 0.8322 0.6029
34 1 3.0757 3.6238 0.2180
35 1 0.5478 4.6042 -1.8423
36 1 0.6212 6.3039 -1.3167
37 1 2.3384 5.9313 -3.0111
38 1 2.9774 4.5374 -2.1021
39 1 4.4832 5.5102 -3.2255
40 1 3.7352 8.1899 0.7570
41 1 4.4693 7.0492 1.9091
42 1 5.2780 7.3952 0.3615
43 1 2.3307 5.6374 1.9087
44 1 1.6529 6.9018 0.8540
45 1 4.1976 2.1114 -0.0098
46 1 5.3845 -0.0293 0.0006
47 1 4.9413 -2.9192 0.0014
48 1 0.7394 -2.8053 0.0013
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000947472924.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:41:57
Heat of formation + Delta-G solvation = 58.339036 kcal
Electronic energy + Delta-G solvation = -30576.134519 eV
Core-core repulsion = 26632.159129 eV
Total energy + Delta-G solvation = -3943.975390 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-43.85946 -41.42218 -39.64467 -37.97447 -36.24771 -35.08972 -34.20263 -33.16934
-32.45540 -31.22648 -29.76243 -28.51461 -27.96351 -26.76043 -25.15539 -23.83306
-23.60186 -22.61261 -22.36174 -21.90491 -20.33538 -19.35346 -18.88624 -18.18843
-17.41547 -17.21688 -16.93965 -16.73603 -16.22896 -16.05789 -15.77038 -15.59054
-15.40777 -15.01365 -14.92393 -14.61087 -14.54619 -14.34696 -14.07644 -13.98412
-13.71253 -13.42890 -13.14884 -12.74631 -12.70288 -12.64936 -12.53116 -12.45365
-12.32389 -11.95845 -11.90942 -11.75833 -11.70784 -11.48492 -11.44468 -10.94392
-10.86283 -10.43056 -10.41949 -10.02906 -8.82537 -8.60124 -8.11341 -5.34983
-0.49316 -0.04880 1.31540 1.56428 1.59504 1.66134 1.83715 2.02528
2.18477 2.42380 2.68227 3.21470 3.28567 3.44900 3.51322 3.54412
3.65150 3.74825 3.83306 3.85723 3.98063 4.10372 4.30520 4.32108
4.40512 4.48797 4.49819 4.55067 4.57239 4.63449 4.66451 4.84212
4.86607 4.90768 4.95248 5.01675 5.05654 5.08773 5.15525 5.23182
5.25643 5.40910 5.46159 5.48278 5.50972 5.57185 5.99646 6.02695
6.43250 6.49021 6.73636 7.07983 7.14858 7.85812 8.31426 9.10487
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.016114 B = 0.002922 C = 0.002771
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1737.153661 B = 9581.359908 C =10103.610678
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 C 0.162 3.838
3 C -0.179 4.179
4 C 0.569 3.431
5 O -0.558 6.558
6 N -0.701 5.701
7 C 0.163 3.837
8 H 0.088 0.912
9 C -0.137 4.137
10 C 0.169 3.831
11 N -0.608 5.608
12 C -0.338 4.338
13 H 0.059 0.941
14 C -0.077 4.077
15 N -0.949 5.949
16 Si 1.107 2.893
17 H -0.299 1.299
18 H -0.284 1.284
19 H -0.276 1.276
20 C 0.162 3.838
21 H 0.024 0.976
22 C -0.128 4.128
23 C -0.126 4.126
24 C -0.108 4.108
25 C -0.080 4.080
26 C -0.011 4.011
27 C -0.024 4.024
28 N -0.479 5.479
29 C 0.153 3.847
30 N -0.382 5.382
31 H 0.090 0.910
32 H 0.093 0.907
33 H 0.109 0.891
34 H 0.405 0.595
35 H 0.052 0.948
36 H 0.064 0.936
37 H 0.032 0.968
38 H 0.004 0.996
39 H 0.254 0.746
40 H 0.046 0.954
41 H 0.076 0.924
42 H 0.037 0.963
43 H 0.091 0.909
44 H 0.075 0.925
45 H 0.149 0.851
46 H 0.179 0.821
47 H 0.205 0.795
48 H 0.244 0.756
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.497 -12.251 12.587 18.131
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.176 4.176
2 C 0.057 3.943
3 C -0.185 4.185
4 C 0.357 3.643
5 O -0.439 6.439
6 N -0.352 5.352
7 C 0.058 3.942
8 H 0.106 0.894
9 C -0.177 4.177
10 C 0.043 3.957
11 N -0.333 5.333
12 C -0.468 4.468
13 H 0.077 0.923
14 C -0.274 4.274
15 N -0.592 5.592
16 Si 0.933 3.067
17 H -0.225 1.225
18 H -0.210 1.210
19 H -0.201 1.201
20 C 0.057 3.943
21 H 0.042 0.958
22 C -0.186 4.186
23 C -0.166 4.166
24 C -0.128 4.128
25 C -0.099 4.099
26 C -0.118 4.118
27 C -0.176 4.176
28 N -0.192 5.192
29 C -0.122 4.122
30 N -0.056 5.056
31 H 0.108 0.892
32 H 0.111 0.889
33 H 0.127 0.873
34 H 0.242 0.758
35 H 0.071 0.929
36 H 0.083 0.917
37 H 0.051 0.949
38 H 0.022 0.978
39 H 0.064 0.936
40 H 0.065 0.935
41 H 0.095 0.905
42 H 0.056 0.944
43 H 0.110 0.890
44 H 0.094 0.906
45 H 0.166 0.834
46 H 0.196 0.804
47 H 0.221 0.779
48 H 0.260 0.740
Dipole moment (debyes) X Y Z Total
from point charges -5.164 -12.469 11.036 17.434
hybrid contribution 0.392 0.263 0.912 1.027
sum -4.772 -12.206 11.949 17.735
Atomic orbital electron populations
1.21341 0.85243 1.05682 1.05285 1.20594 0.96216 0.82752 0.94698
1.20207 0.94452 0.92037 1.11815 1.17786 0.86627 0.83687 0.76171
1.90698 1.14277 1.87402 1.51572 1.45936 1.11387 1.05185 1.72735
1.20802 0.95806 0.82304 0.95241 0.89362 1.22213 0.98016 1.00475
0.96991 1.20498 0.89408 0.91621 0.94194 1.44381 1.54445 1.28411
1.06080 1.20144 1.37368 0.92244 0.97048 0.92323 1.26996 0.97329
1.05157 0.97876 1.70895 1.49211 0.99032 1.40022 0.82939 0.76834
0.72198 0.74722 1.22505 1.21015 1.20144 1.20647 0.93768 0.96124
0.83801 0.95800 1.21712 0.99465 0.97941 0.99438 1.22246 0.96805
0.98319 0.99197 1.22206 0.91124 0.99582 0.99937 1.20711 1.01586
0.88031 0.99556 1.20117 0.82687 0.97811 1.11215 1.23050 0.98982
0.86862 1.08704 1.70001 0.98669 1.33741 1.16820 1.25821 1.01755
0.75946 1.08632 1.43114 1.07772 1.06786 1.47900 0.89167 0.88857
0.87262 0.75769 0.92920 0.91688 0.94939 0.97783 0.93603 0.93464
0.90476 0.94397 0.89018 0.90605 0.83365 0.80414 0.77860 0.73998
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.28 8.58 71.24 0.61 -1.66 16
2 C 0.16 3.74 6.83 41.41 0.28 4.02 16
3 C -0.18 -4.51 5.98 -19.12 -0.11 -4.62 16
4 C 0.57 16.20 7.65 86.69 0.66 16.87 16
5 O -0.56 -17.69 12.86 -4.03 -0.05 -17.75 16
6 N -0.70 -19.53 4.23 -445.56 -1.88 -21.41 16
7 C 0.16 4.85 2.78 45.02 0.13 4.98 16
8 H 0.09 2.54 7.58 -2.39 -0.02 2.52 16
9 C -0.14 -5.01 5.75 30.53 0.18 -4.83 16
10 C 0.17 7.59 4.41 86.22 0.38 7.97 16
11 N -0.61 -27.51 2.81 -676.04 -1.90 -29.41 16
12 C -0.34 -17.50 8.44 84.04 0.71 -16.79 16
13 H 0.06 3.00 6.34 -2.91 -0.02 2.98 16
14 C -0.08 -4.23 4.74 84.86 0.40 -3.83 16
15 N -0.95 -56.38 12.51 21.65 0.27 -56.11 16
16 Si 1.11 49.96 29.97 68.60 2.06 52.02 16
17 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16
18 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16
19 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16
20 C 0.16 5.65 3.20 44.98 0.14 5.80 16
21 H 0.02 0.83 6.65 -2.39 -0.02 0.81 16
22 C -0.13 -4.20 7.96 71.98 0.57 -3.63 16
23 C -0.13 -3.55 5.07 30.67 0.16 -3.40 16
24 C -0.11 -2.40 9.72 23.80 0.23 -2.17 16
25 C -0.08 -1.58 10.09 22.38 0.23 -1.35 16
26 C -0.01 -0.24 6.78 38.81 0.26 0.02 16
27 C -0.02 -0.52 12.00 84.37 1.01 0.50 16
28 N -0.48 -11.14 11.19 -197.51 -2.21 -13.35 16
29 C 0.15 3.04 12.09 179.91 2.18 5.21 16
30 N -0.38 -8.53 2.94 -336.61 -0.99 -9.52 16
31 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16
32 H 0.09 1.19 7.19 -2.39 -0.02 1.17 16
33 H 0.11 2.45 5.70 -2.39 -0.01 2.43 16
34 H 0.40 10.64 5.01 -92.71 -0.46 10.18 16
35 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16
36 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16
37 H 0.03 1.72 6.51 -2.39 -0.02 1.71 16
38 H 0.00 0.20 7.41 -2.38 -0.02 0.18 16
39 H 0.25 15.26 6.65 -92.71 -0.62 14.65 16
40 H 0.05 1.61 7.43 -2.39 -0.02 1.59 16
41 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16
42 H 0.04 1.41 7.64 -2.39 -0.02 1.39 16
43 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16
44 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16
45 H 0.15 2.98 6.63 -2.91 -0.02 2.96 16
46 H 0.18 2.39 8.06 -2.92 -0.02 2.37 16
47 H 0.20 3.06 8.06 -2.91 -0.02 3.04 16
48 H 0.24 2.78 7.57 -2.91 -0.02 2.76 16
Total: -1.00 -69.09 373.16 3.99 -65.10
By element:
Atomic # 1 Polarization: 26.67 SS G_CDS: 0.68 Total: 27.35 kcal
Atomic # 6 Polarization: -4.93 SS G_CDS: 8.01 Total: 3.08 kcal
Atomic # 7 Polarization: -123.09 SS G_CDS: -6.71 Total: -129.81 kcal
Atomic # 8 Polarization: -17.69 SS G_CDS: -0.05 Total: -17.75 kcal
Atomic # 14 Polarization: 49.96 SS G_CDS: 2.06 Total: 52.02 kcal
Total: -69.09 3.99 -65.10 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000947472924.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 123.441 kcal
(2) G-P(sol) polarization free energy of solvation -69.090 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.351 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.988 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.102 kcal
(6) G-S(sol) free energy of system = (1) + (5) 58.339 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds