Wall clock time and date at job start Sat Apr 11 2020 06:42:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.36026 * 120.33782 * 2 1
4 4 C 1.40471 * 119.69008 * 179.97438 * 3 2 1
5 5 C 1.34947 * 120.30370 * 359.97438 * 4 3 2
6 6 N 1.36485 * 120.61195 * 0.02562 * 5 4 3
7 7 C 1.36828 * 132.56943 * 179.97438 * 6 5 4
8 8 C 1.35108 * 107.18249 * 180.02562 * 7 6 5
9 9 C 1.50700 * 125.69122 * 179.73353 * 8 7 6
10 10 C 1.50700 * 109.46858 * 124.99963 * 9 8 7
11 11 O 1.21275 * 119.99969 * 359.97438 * 10 9 8
12 12 N 1.34776 * 119.99774 * 180.02562 * 10 9 8
13 13 C 1.47426 * 125.64788 * 0.02562 * 12 10 9
14 14 C 1.54912 * 104.83325 * 204.09043 * 13 12 10
15 15 C 1.55157 * 101.58031 * 322.99503 * 14 13 12
16 16 H 1.08998 * 110.72081 * 153.86852 * 15 14 13
17 17 N 1.46510 * 110.71702 * 276.95775 * 15 14 13
18 18 C 1.36935 * 119.99713 * 210.83743 * 17 15 14
19 19 H 1.08000 * 120.00556 * 359.97438 * 18 17 15
20 20 C 1.38813 * 119.99706 * 180.02562 * 18 17 15
21 21 N 1.31617 * 120.00444 * 359.97438 * 20 18 17
22 22 Si 1.86807 * 120.00034 * 179.97438 * 20 18 17
23 23 H 1.48503 * 109.46848 * 89.99653 * 22 20 18
24 24 H 1.48491 * 109.47407 * 209.99944 * 22 20 18
25 25 H 1.48501 * 109.46907 * 330.00178 * 22 20 18
26 26 C 1.47025 * 125.64714 * 179.71395 * 12 10 9
27 27 H 1.09000 * 109.87989 * 59.56438 * 26 12 10
28 28 C 1.52995 * 109.88455 * 298.39335 * 26 12 10
29 29 N 1.33523 * 108.62219 * 359.97438 * 8 7 6
30 30 C 1.32556 * 109.15914 * 0.02562 * 29 8 7
31 31 H 1.09000 * 109.46976 * 89.99614 * 1 2 3
32 32 H 1.08997 * 109.47301 * 209.99367 * 1 2 3
33 33 H 1.08997 * 109.46751 * 329.99891 * 1 2 3
34 34 H 1.07999 * 120.14806 * 0.02562 * 3 2 1
35 35 H 1.08004 * 119.84397 * 179.97438 * 4 3 2
36 36 H 1.08002 * 119.69315 * 179.97438 * 5 4 3
37 37 H 1.07999 * 126.41324 * 359.97438 * 7 6 5
38 38 H 1.09000 * 109.47174 * 244.99906 * 9 8 7
39 39 H 1.09001 * 109.46977 * 4.99894 * 9 8 7
40 40 H 1.08991 * 110.37094 * 322.93156 * 13 12 10
41 41 H 1.09005 * 110.36686 * 85.25381 * 13 12 10
42 42 H 1.08998 * 110.99951 * 81.06754 * 14 13 12
43 43 H 1.08998 * 111.00326 * 204.88261 * 14 13 12
44 44 H 0.96995 * 120.00048 * 30.83903 * 17 15 14
45 45 H 0.96994 * 120.00780 * 180.02562 * 21 20 18
46 46 H 1.09007 * 109.46536 * 65.45033 * 28 26 12
47 47 H 1.08999 * 109.47474 * 185.44605 * 28 26 12
48 48 H 1.08999 * 109.47537 * 305.45468 * 28 26 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1941 1.1740 0.0000
4 6 3.5987 1.1581 0.0005
5 6 4.2664 -0.0146 0.0016
6 7 3.5895 -1.1998 0.0016
7 6 4.0055 -2.5033 0.0021
8 6 2.8971 -3.2759 0.0012
9 6 2.8758 -4.7828 -0.0043
10 6 2.0560 -5.2778 1.1592
11 8 1.5403 -4.4851 1.9185
12 7 1.8968 -6.6015 1.3567
13 6 2.4666 -7.6702 0.5161
14 6 1.5412 -8.8911 0.7455
15 6 1.2046 -8.7479 2.2533
16 1 0.2462 -9.2146 2.4805
17 7 2.2686 -9.3249 3.0789
18 6 1.9674 -9.8805 4.2937
19 1 0.9456 -9.8930 4.6434
20 6 2.9755 -10.4267 5.0761
21 7 4.2207 -10.4111 4.6502
22 14 2.5648 -11.1840 6.7337
23 1 2.2608 -12.6269 6.5570
24 1 3.7241 -11.0308 7.6488
25 1 1.3827 -10.4965 7.3127
26 6 1.1315 -7.2189 2.4497
27 1 0.0930 -6.8907 2.4065
28 6 1.7461 -6.8345 3.7970
29 7 1.8238 -2.4818 0.0009
30 6 2.2188 -1.2164 0.0009
31 1 -0.3633 0.0001 -1.0277
32 1 -0.3634 -0.8900 0.5137
33 1 -0.3633 0.8900 0.5138
34 1 1.6620 2.1138 0.0004
35 1 4.1467 2.0888 0.0001
36 1 5.3464 -0.0153 0.0016
37 1 5.0284 -2.8498 0.0021
38 1 2.4347 -5.1365 -0.9362
39 1 3.8945 -5.1609 0.0819
40 1 2.4528 -7.3756 -0.5332
41 1 3.4839 -7.9004 0.8329
42 1 0.6407 -8.8188 0.1356
43 1 2.0695 -9.8241 0.5493
44 1 3.1863 -9.3134 2.7650
45 1 4.9251 -10.7931 5.1968
46 1 1.6372 -5.7612 3.9531
47 1 1.2349 -7.3715 4.5960
48 1 2.8041 -7.0968 3.8019
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000987184568.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:42:44
Heat of formation + Delta-G solvation = 73.715180 kcal
Electronic energy + Delta-G solvation = -29548.893997 eV
Core-core repulsion = 25605.585366 eV
Total energy + Delta-G solvation = -3943.308631 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 1.10 seconds
Orbital eigenvalues (eV)
-42.90530 -39.72686 -37.93298 -37.06061 -34.66248 -33.91975 -32.29808 -31.35541
-30.63570 -30.28288 -28.87511 -27.57580 -27.05579 -25.14686 -23.38708 -22.99820
-22.73310 -22.01668 -20.84344 -19.57519 -18.34284 -17.62099 -17.44280 -17.10703
-16.55990 -15.95191 -15.83242 -15.57284 -14.87198 -14.44290 -14.38374 -14.23731
-13.82813 -13.51036 -13.45673 -13.42767 -13.01169 -12.93902 -12.81902 -12.49817
-12.40635 -12.13168 -11.95473 -11.88948 -11.61468 -11.34382 -11.26869 -10.85422
-10.80276 -10.73611 -10.55310 -10.43419 -10.11618 -10.03933 -10.01459 -9.64144
-9.29816 -8.93972 -8.72458 -8.07844 -7.89650 -7.00963 -5.80142 -3.08771
0.55760 1.13913 2.45531 2.71037 3.12709 3.33691 3.42467 3.48831
3.49624 3.57290 4.02528 4.20871 4.47223 4.56908 4.57211 4.74571
4.88257 5.02547 5.07259 5.13216 5.17900 5.33370 5.38394 5.44917
5.46919 5.47849 5.61835 5.63909 5.69608 5.75087 5.78139 5.84799
5.90412 5.95479 6.10457 6.18134 6.31443 6.34561 6.37617 6.51033
6.55305 6.67184 6.73152 6.92405 6.96463 7.15483 7.40371 7.68401
7.87765 8.07464 8.37599 8.69917 9.49782 10.04309 10.39697 11.42099
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.019835 B = 0.002270 C = 0.002236
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1411.288481 B =12331.599589 C =12520.231775
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.106 4.106
2 C -0.036 4.036
3 C -0.120 4.120
4 C -0.141 4.141
5 C 0.047 3.953
6 N -0.362 5.362
7 C -0.093 4.093
8 C 0.083 3.917
9 C -0.057 4.057
10 C 0.529 3.471
11 O -0.526 6.526
12 N -0.609 5.609
13 C 0.102 3.898
14 C -0.146 4.146
15 C 0.170 3.830
16 H 0.074 0.926
17 N -0.709 5.709
18 C -0.237 4.237
19 H 0.071 0.929
20 C -0.010 4.010
21 N -0.931 5.931
22 Si 0.904 3.096
23 H -0.290 1.290
24 H -0.292 1.292
25 H -0.282 1.282
26 C 0.112 3.888
27 H 0.058 0.942
28 C -0.131 4.131
29 N -0.456 5.456
30 C 0.220 3.780
31 H 0.075 0.925
32 H 0.081 0.919
33 H 0.071 0.929
34 H 0.139 0.861
35 H 0.148 0.852
36 H 0.160 0.840
37 H 0.183 0.817
38 H 0.105 0.895
39 H 0.106 0.894
40 H 0.066 0.934
41 H 0.069 0.931
42 H 0.070 0.930
43 H 0.085 0.915
44 H 0.385 0.615
45 H 0.255 0.745
46 H 0.038 0.962
47 H 0.065 0.935
48 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.382 20.475 -15.439 25.646
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C -0.039 4.039
3 C -0.144 4.144
4 C -0.161 4.161
5 C -0.075 4.075
6 N -0.033 5.033
7 C -0.224 4.224
8 C -0.051 4.051
9 C -0.098 4.098
10 C 0.316 3.684
11 O -0.402 6.402
12 N -0.344 5.344
13 C -0.021 4.021
14 C -0.185 4.185
15 C 0.057 3.943
16 H 0.092 0.908
17 N -0.348 5.348
18 C -0.368 4.368
19 H 0.089 0.911
20 C -0.207 4.207
21 N -0.579 5.579
22 Si 0.736 3.264
23 H -0.218 1.218
24 H -0.219 1.219
25 H -0.207 1.207
26 C 0.006 3.994
27 H 0.076 0.924
28 C -0.189 4.189
29 N -0.175 5.175
30 C -0.024 4.024
31 H 0.094 0.906
32 H 0.100 0.900
33 H 0.090 0.910
34 H 0.157 0.843
35 H 0.166 0.834
36 H 0.178 0.822
37 H 0.200 0.800
38 H 0.124 0.876
39 H 0.124 0.876
40 H 0.084 0.916
41 H 0.087 0.913
42 H 0.089 0.911
43 H 0.104 0.896
44 H 0.219 0.781
45 H 0.065 0.935
46 H 0.057 0.943
47 H 0.084 0.916
48 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges -1.458 20.575 -14.850 25.416
hybrid contribution 1.346 -0.165 0.872 1.613
sum -0.112 20.410 -13.978 24.738
Atomic orbital electron populations
1.20678 0.89004 1.03760 1.02857 1.19047 0.96977 0.88421 0.99442
1.20875 0.93711 0.97750 1.02062 1.20727 0.94787 0.97023 1.03608
1.21548 0.98533 0.83381 1.03992 1.42750 1.08828 1.05894 1.45854
1.22343 1.00944 0.80626 1.18530 1.20125 0.88217 0.95035 1.01701
1.20000 1.02094 0.88560 0.99175 1.19810 0.81481 0.80938 0.86199
1.90708 1.48667 1.53917 1.46859 1.48614 1.52121 1.04310 1.29351
1.22285 0.98003 0.87822 0.94019 1.23150 0.99289 0.97569 0.98480
1.21259 0.94056 0.89663 0.89285 0.90812 1.42320 1.05313 1.68250
1.18887 1.19207 0.93463 1.29983 0.94163 0.91079 1.24711 0.95364
1.01753 0.98822 1.69645 0.99137 1.50845 1.38302 0.86229 0.77079
0.79118 0.84010 1.21754 1.21864 1.20723 1.22647 0.93754 0.95985
0.87034 0.92442 1.21737 1.02484 0.98911 0.95773 1.70631 1.29180
0.97421 1.20227 1.20797 0.80096 0.94419 1.07051 0.90638 0.90025
0.91038 0.84299 0.83426 0.82240 0.80020 0.87649 0.87584 0.91586
0.91272 0.91124 0.89606 0.78110 0.93518 0.94331 0.91642 0.91760
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.02 10.03 36.01 0.36 -0.66 16
2 C -0.04 -0.41 5.90 -104.39 -0.62 -1.03 16
3 C -0.12 -1.00 9.72 -39.54 -0.38 -1.38 16
4 C -0.14 -1.01 9.98 -39.91 -0.40 -1.41 16
5 C 0.05 0.41 10.95 -16.65 -0.18 0.23 16
6 N -0.36 -4.47 2.94 -62.66 -0.18 -4.65 16
7 C -0.09 -1.15 11.63 -16.44 -0.19 -1.35 16
8 C 0.08 1.23 5.84 -82.97 -0.48 0.75 16
9 C -0.06 -0.76 5.27 -29.04 -0.15 -0.91 16
10 C 0.53 9.34 7.63 -10.99 -0.08 9.26 16
11 O -0.53 -11.47 14.68 5.56 0.08 -11.39 16
12 N -0.61 -10.35 3.06 -163.01 -0.50 -10.85 16
13 C 0.10 1.43 6.62 -2.53 -0.02 1.41 16
14 C -0.15 -2.16 6.70 -24.58 -0.16 -2.32 16
15 C 0.17 3.20 3.53 -66.08 -0.23 2.97 16
16 H 0.07 1.39 8.05 -51.93 -0.42 0.97 16
17 N -0.71 -16.45 3.81 -51.64 -0.20 -16.65 16
18 C -0.24 -6.22 8.62 -15.06 -0.13 -6.35 16
19 H 0.07 1.83 7.82 -52.49 -0.41 1.42 16
20 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16
21 N -0.93 -27.14 13.06 55.49 0.72 -26.42 16
22 Si 0.90 22.03 29.55 -169.99 -5.02 17.01 16
23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16
24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16
25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
26 C 0.11 2.13 3.43 -66.95 -0.23 1.90 16
27 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16
28 C -0.13 -2.83 8.08 37.16 0.30 -2.53 16
29 N -0.46 -7.65 10.67 -9.00 -0.10 -7.75 16
30 C 0.22 3.18 7.52 -156.04 -1.17 2.00 16
31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16
32 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16
33 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16
34 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16
35 H 0.15 0.56 8.06 -52.48 -0.42 0.13 16
36 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16
37 H 0.18 1.59 8.06 -52.49 -0.42 1.16 16
38 H 0.11 1.18 7.85 -51.93 -0.41 0.77 16
39 H 0.11 1.11 8.10 -51.93 -0.42 0.69 16
40 H 0.07 0.72 7.48 -51.93 -0.39 0.33 16
41 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16
42 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
43 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16
44 H 0.38 9.55 7.86 -40.82 -0.32 9.23 16
45 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16
46 H 0.04 0.85 7.01 -51.93 -0.36 0.48 16
47 H 0.06 1.47 7.32 -51.93 -0.38 1.09 16
48 H 0.06 1.53 7.55 -51.93 -0.39 1.14 16
LS Contribution 392.53 15.07 5.92 5.92
Total: -1.00 -35.39 392.53 -10.44 -45.83
By element:
Atomic # 1 Polarization: 16.04 SS G_CDS: -7.28 Total: 8.76 kcal
Atomic # 6 Polarization: 4.06 SS G_CDS: -3.88 Total: 0.19 kcal
Atomic # 7 Polarization: -66.07 SS G_CDS: -0.25 Total: -66.32 kcal
Atomic # 8 Polarization: -11.47 SS G_CDS: 0.08 Total: -11.39 kcal
Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal
Total LS contribution 5.92 Total: 5.92 kcal
Total: -35.39 -10.44 -45.83 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000987184568.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 119.546 kcal
(2) G-P(sol) polarization free energy of solvation -35.394 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.152 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.437 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.831 kcal
(6) G-S(sol) free energy of system = (1) + (5) 73.715 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.10 seconds