Wall clock time and date at job start Sat Apr 11 2020 06:42:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.36026 * 120.33782 * 2 1
4 4 C 1.40471 * 119.69008 * 179.97438 * 3 2 1
5 5 C 1.34947 * 120.30370 * 359.97438 * 4 3 2
6 6 N 1.36485 * 120.61195 * 0.02562 * 5 4 3
7 7 C 1.36828 * 132.56943 * 179.97438 * 6 5 4
8 8 C 1.35108 * 107.18249 * 180.02562 * 7 6 5
9 9 C 1.50700 * 125.69122 * 179.73353 * 8 7 6
10 10 C 1.50700 * 109.46858 * 124.99963 * 9 8 7
11 11 O 1.21275 * 119.99969 * 359.97438 * 10 9 8
12 12 N 1.34776 * 119.99774 * 180.02562 * 10 9 8
13 13 C 1.47426 * 125.64788 * 0.02562 * 12 10 9
14 14 C 1.54912 * 104.83325 * 204.09043 * 13 12 10
15 15 C 1.55157 * 101.58031 * 322.99503 * 14 13 12
16 16 H 1.08998 * 110.72081 * 153.86852 * 15 14 13
17 17 N 1.46510 * 110.71702 * 276.95775 * 15 14 13
18 18 C 1.36935 * 119.99713 * 210.83743 * 17 15 14
19 19 H 1.08000 * 120.00556 * 359.97438 * 18 17 15
20 20 C 1.38813 * 119.99706 * 180.02562 * 18 17 15
21 21 N 1.31617 * 120.00444 * 359.97438 * 20 18 17
22 22 Si 1.86807 * 120.00034 * 179.97438 * 20 18 17
23 23 H 1.48503 * 109.46848 * 89.99653 * 22 20 18
24 24 H 1.48491 * 109.47407 * 209.99944 * 22 20 18
25 25 H 1.48501 * 109.46907 * 330.00178 * 22 20 18
26 26 C 1.47025 * 125.64714 * 179.71395 * 12 10 9
27 27 H 1.09000 * 109.87989 * 59.56438 * 26 12 10
28 28 C 1.52995 * 109.88455 * 298.39335 * 26 12 10
29 29 N 1.33523 * 108.62219 * 359.97438 * 8 7 6
30 30 C 1.32556 * 109.15914 * 0.02562 * 29 8 7
31 31 H 1.09000 * 109.46976 * 89.99614 * 1 2 3
32 32 H 1.08997 * 109.47301 * 209.99367 * 1 2 3
33 33 H 1.08997 * 109.46751 * 329.99891 * 1 2 3
34 34 H 1.07999 * 120.14806 * 0.02562 * 3 2 1
35 35 H 1.08004 * 119.84397 * 179.97438 * 4 3 2
36 36 H 1.08002 * 119.69315 * 179.97438 * 5 4 3
37 37 H 1.07999 * 126.41324 * 359.97438 * 7 6 5
38 38 H 1.09000 * 109.47174 * 244.99906 * 9 8 7
39 39 H 1.09001 * 109.46977 * 4.99894 * 9 8 7
40 40 H 1.08991 * 110.37094 * 322.93156 * 13 12 10
41 41 H 1.09005 * 110.36686 * 85.25381 * 13 12 10
42 42 H 1.08998 * 110.99951 * 81.06754 * 14 13 12
43 43 H 1.08998 * 111.00326 * 204.88261 * 14 13 12
44 44 H 0.96995 * 120.00048 * 30.83903 * 17 15 14
45 45 H 0.96994 * 120.00780 * 180.02562 * 21 20 18
46 46 H 1.09007 * 109.46536 * 65.45033 * 28 26 12
47 47 H 1.08999 * 109.47474 * 185.44605 * 28 26 12
48 48 H 1.08999 * 109.47537 * 305.45468 * 28 26 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1941 1.1740 0.0000
4 6 3.5987 1.1581 0.0005
5 6 4.2664 -0.0146 0.0016
6 7 3.5895 -1.1998 0.0016
7 6 4.0055 -2.5033 0.0021
8 6 2.8971 -3.2759 0.0012
9 6 2.8758 -4.7828 -0.0043
10 6 2.0560 -5.2778 1.1592
11 8 1.5403 -4.4851 1.9185
12 7 1.8968 -6.6015 1.3567
13 6 2.4666 -7.6702 0.5161
14 6 1.5412 -8.8911 0.7455
15 6 1.2046 -8.7479 2.2533
16 1 0.2462 -9.2146 2.4805
17 7 2.2686 -9.3249 3.0789
18 6 1.9674 -9.8805 4.2937
19 1 0.9456 -9.8930 4.6434
20 6 2.9755 -10.4267 5.0761
21 7 4.2207 -10.4111 4.6502
22 14 2.5648 -11.1840 6.7337
23 1 2.2608 -12.6269 6.5570
24 1 3.7241 -11.0308 7.6488
25 1 1.3827 -10.4965 7.3127
26 6 1.1315 -7.2189 2.4497
27 1 0.0930 -6.8907 2.4065
28 6 1.7461 -6.8345 3.7970
29 7 1.8238 -2.4818 0.0009
30 6 2.2188 -1.2164 0.0009
31 1 -0.3633 0.0001 -1.0277
32 1 -0.3634 -0.8900 0.5137
33 1 -0.3633 0.8900 0.5138
34 1 1.6620 2.1138 0.0004
35 1 4.1467 2.0888 0.0001
36 1 5.3464 -0.0153 0.0016
37 1 5.0284 -2.8498 0.0021
38 1 2.4347 -5.1365 -0.9362
39 1 3.8945 -5.1609 0.0819
40 1 2.4528 -7.3756 -0.5332
41 1 3.4839 -7.9004 0.8329
42 1 0.6407 -8.8188 0.1356
43 1 2.0695 -9.8241 0.5493
44 1 3.1863 -9.3134 2.7650
45 1 4.9251 -10.7931 5.1968
46 1 1.6372 -5.7612 3.9531
47 1 1.2349 -7.3715 4.5960
48 1 2.8041 -7.0968 3.8019
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000987184568.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:42:43
Heat of formation + Delta-G solvation = 52.171704 kcal
Electronic energy + Delta-G solvation = -29549.828192 eV
Core-core repulsion = 25605.585366 eV
Total energy + Delta-G solvation = -3944.242826 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 1.16 seconds
Orbital eigenvalues (eV)
-43.74631 -41.12330 -39.01534 -38.23382 -35.71252 -35.44617 -33.59430 -32.80228
-32.05866 -31.28309 -30.41660 -28.54708 -27.85188 -26.78278 -25.28317 -24.03200
-23.70043 -22.93803 -21.89874 -20.93778 -19.71143 -19.33442 -18.43450 -18.07617
-17.72681 -17.20991 -16.83370 -16.43844 -16.40749 -15.93133 -15.47411 -15.26454
-15.09118 -15.07423 -14.89382 -14.46582 -14.20270 -14.12682 -13.92295 -13.73730
-13.52605 -13.33044 -13.07660 -12.92945 -12.78709 -12.69319 -12.57148 -12.47308
-12.34086 -12.27569 -12.20186 -11.82637 -11.68371 -11.52187 -11.48173 -11.00197
-10.94114 -10.68379 -9.61001 -9.50076 -8.97636 -8.69436 -7.90967 -5.17195
-0.14402 0.36316 1.47951 1.49159 1.56264 1.66365 1.77418 1.83454
2.25839 2.57761 2.59353 3.21255 3.40405 3.47752 3.68706 3.78206
3.84702 3.92267 3.96895 4.05066 4.17903 4.26498 4.31965 4.35593
4.42410 4.45770 4.51446 4.57635 4.67799 4.70906 4.75071 4.79308
4.82478 4.86145 4.96400 5.04350 5.09317 5.15238 5.19567 5.27652
5.35017 5.37518 5.49926 5.54995 5.59334 5.64548 5.69841 6.20053
6.30887 6.73665 6.97777 7.34186 7.39076 8.12020 8.36765 9.31967
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.019835 B = 0.002270 C = 0.002236
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1411.288481 B =12331.599589 C =12520.231775
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.099 4.099
2 C -0.080 4.080
3 C -0.099 4.099
4 C -0.134 4.134
5 C 0.033 3.967
6 N -0.368 5.368
7 C -0.095 4.095
8 C 0.047 3.953
9 C -0.046 4.046
10 C 0.521 3.479
11 O -0.577 6.577
12 N -0.609 5.609
13 C 0.102 3.898
14 C -0.131 4.131
15 C 0.163 3.837
16 H 0.075 0.925
17 N -0.714 5.714
18 C -0.226 4.226
19 H 0.073 0.927
20 C -0.070 4.070
21 N -0.965 5.965
22 Si 0.960 3.040
23 H -0.286 1.286
24 H -0.301 1.301
25 H -0.275 1.275
26 C 0.116 3.884
27 H 0.055 0.945
28 C -0.112 4.112
29 N -0.511 5.511
30 C 0.195 3.805
31 H 0.081 0.919
32 H 0.045 0.955
33 H 0.096 0.904
34 H 0.173 0.827
35 H 0.192 0.808
36 H 0.195 0.805
37 H 0.215 0.785
38 H 0.128 0.872
39 H 0.136 0.864
40 H 0.110 0.890
41 H 0.063 0.937
42 H 0.098 0.902
43 H 0.089 0.911
44 H 0.376 0.624
45 H 0.248 0.752
46 H 0.024 0.976
47 H 0.049 0.951
48 H 0.038 0.962
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.412 22.376 -17.408 28.353
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C -0.082 4.082
3 C -0.122 4.122
4 C -0.154 4.154
5 C -0.088 4.088
6 N -0.039 5.039
7 C -0.226 4.226
8 C -0.086 4.086
9 C -0.086 4.086
10 C 0.311 3.689
11 O -0.456 6.456
12 N -0.343 5.343
13 C -0.020 4.020
14 C -0.170 4.170
15 C 0.052 3.948
16 H 0.093 0.907
17 N -0.352 5.352
18 C -0.358 4.358
19 H 0.091 0.909
20 C -0.263 4.263
21 N -0.616 5.616
22 Si 0.791 3.209
23 H -0.214 1.214
24 H -0.228 1.228
25 H -0.201 1.201
26 C 0.009 3.991
27 H 0.073 0.927
28 C -0.171 4.171
29 N -0.231 5.231
30 C -0.049 4.049
31 H 0.100 0.900
32 H 0.064 0.936
33 H 0.115 0.885
34 H 0.191 0.809
35 H 0.209 0.791
36 H 0.212 0.788
37 H 0.232 0.768
38 H 0.146 0.854
39 H 0.154 0.846
40 H 0.128 0.872
41 H 0.082 0.918
42 H 0.117 0.883
43 H 0.108 0.892
44 H 0.209 0.791
45 H 0.057 0.943
46 H 0.044 0.956
47 H 0.068 0.932
48 H 0.057 0.943
Dipole moment (debyes) X Y Z Total
from point charges -0.691 22.474 -16.864 28.106
hybrid contribution 1.060 -0.545 1.462 1.886
sum 0.369 21.929 -15.402 26.800
Atomic orbital electron populations
1.20614 0.88716 1.03126 1.03111 1.19384 0.97674 0.88677 1.02488
1.21396 0.94601 0.97860 0.98387 1.21332 0.94501 0.98254 1.01362
1.22367 1.00372 0.82585 1.03504 1.42984 1.08408 1.06940 1.45536
1.22810 1.01698 0.80617 1.17478 1.20488 0.88855 0.95790 1.03444
1.20031 1.02782 0.88110 0.97651 1.20685 0.81022 0.80444 0.86773
1.90682 1.50745 1.55207 1.48947 1.48679 1.51761 1.04966 1.28924
1.22478 0.97162 0.86481 0.95870 1.23080 1.00691 0.98137 0.95114
1.21454 0.92946 0.88743 0.91658 0.90690 1.42393 1.05903 1.68308
1.18644 1.19507 0.93304 1.28052 0.94930 0.90869 1.25365 0.95486
1.03527 1.01890 1.69775 0.99785 1.52720 1.39307 0.85331 0.76506
0.78462 0.80634 1.21363 1.22802 1.20066 1.22387 0.93761 0.96359
0.86571 0.92676 1.21514 1.00647 0.97661 0.97265 1.70525 1.30930
0.99039 1.22592 1.21264 0.81534 0.94679 1.07384 0.90018 0.93626
0.88532 0.80922 0.79136 0.78801 0.76792 0.85426 0.84630 0.87152
0.91844 0.88347 0.89241 0.79123 0.94261 0.95649 0.93210 0.94305
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -1.95 10.03 71.24 0.71 -1.24 16
2 C -0.08 -1.78 5.90 -19.72 -0.12 -1.90 16
3 C -0.10 -1.36 9.72 22.30 0.22 -1.15 16
4 C -0.13 -1.42 9.98 22.06 0.22 -1.20 16
5 C 0.03 0.47 10.95 83.21 0.91 1.38 16
6 N -0.37 -8.70 2.94 -352.16 -1.04 -9.74 16
7 C -0.09 -2.26 11.63 83.19 0.97 -1.29 16
8 C 0.05 1.41 5.84 41.58 0.24 1.65 16
9 C -0.05 -1.15 5.27 29.10 0.15 -1.00 16
10 C 0.52 18.53 7.63 87.66 0.67 19.20 16
11 O -0.58 -26.30 14.68 -3.01 -0.04 -26.35 16
12 N -0.61 -20.37 3.06 -788.04 -2.41 -22.78 16
13 C 0.10 2.62 6.62 86.86 0.58 3.20 16
14 C -0.13 -3.58 6.70 31.99 0.21 -3.37 16
15 C 0.16 6.04 3.53 46.18 0.16 6.20 16
16 H 0.08 2.77 8.05 -2.39 -0.02 2.75 16
17 N -0.71 -33.38 3.81 -317.29 -1.21 -34.59 16
18 C -0.23 -11.95 8.62 84.03 0.72 -11.23 16
19 H 0.07 3.78 7.82 -2.91 -0.02 3.76 16
20 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16
21 N -0.96 -57.39 13.06 21.65 0.28 -57.11 16
22 Si 0.96 45.99 29.55 68.60 2.03 48.01 16
23 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16
24 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16
25 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16
26 C 0.12 4.47 3.43 45.34 0.16 4.62 16
27 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16
28 C -0.11 -5.08 8.08 71.98 0.58 -4.50 16
29 N -0.51 -17.92 10.67 -182.39 -1.95 -19.87 16
30 C 0.20 5.75 7.52 134.11 1.01 6.76 16
31 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16
32 H 0.04 1.21 8.10 -2.39 -0.02 1.19 16
33 H 0.10 1.30 8.09 -2.39 -0.02 1.28 16
34 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16
35 H 0.19 0.34 8.06 -2.91 -0.02 0.31 16
36 H 0.20 1.26 8.06 -2.91 -0.02 1.23 16
37 H 0.22 3.25 8.06 -2.91 -0.02 3.22 16
38 H 0.13 2.58 7.85 -2.39 -0.02 2.56 16
39 H 0.14 2.53 8.10 -2.39 -0.02 2.52 16
40 H 0.11 1.93 7.48 -2.39 -0.02 1.91 16
41 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16
42 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16
43 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16
44 H 0.38 18.88 7.86 -92.71 -0.73 18.16 16
45 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16
46 H 0.02 1.17 7.01 -2.38 -0.02 1.15 16
47 H 0.05 2.33 7.32 -2.39 -0.02 2.32 16
48 H 0.04 1.91 7.55 -2.39 -0.02 1.89 16
Total: -1.00 -83.32 392.53 3.77 -79.56
By element:
Atomic # 1 Polarization: 29.95 SS G_CDS: 0.24 Total: 30.20 kcal
Atomic # 6 Polarization: 4.80 SS G_CDS: 7.87 Total: 12.67 kcal
Atomic # 7 Polarization: -137.77 SS G_CDS: -6.32 Total: -144.09 kcal
Atomic # 8 Polarization: -26.30 SS G_CDS: -0.04 Total: -26.35 kcal
Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal
Total: -83.32 3.77 -79.56 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000987184568.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 131.727 kcal
(2) G-P(sol) polarization free energy of solvation -83.324 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.403 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.769 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.555 kcal
(6) G-S(sol) free energy of system = (1) + (5) 52.172 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.16 seconds