Wall clock time and date at job start Sat Apr 11 2020 06:41:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 N 1.30866 * 125.81287 * 2 1
4 4 N 1.40068 * 108.38454 * 179.97438 * 3 2 1
5 5 C 1.40156 * 126.06668 * 179.97438 * 4 3 2
6 6 C 1.38843 * 120.07008 * 325.02036 * 5 4 3
7 7 C 1.38106 * 119.93653 * 179.97438 * 6 5 4
8 8 C 1.38285 * 120.07019 * 0.02562 * 7 6 5
9 9 C 1.38285 * 120.12930 * 0.02562 * 8 7 6
10 10 C 1.38113 * 120.06865 * 359.97438 * 9 8 7
11 11 C 1.36082 * 107.86452 * 0.25526 * 4 3 2
12 12 C 1.50698 * 126.23636 * 179.70148 * 11 4 3
13 13 C 1.35758 * 107.52820 * 359.58194 * 11 4 3
14 14 N 1.40738 * 126.07593 * 180.11704 * 13 11 4
15 15 C 1.34772 * 120.00561 * 251.39944 * 14 13 11
16 16 O 1.21304 * 119.99592 * 4.31134 * 15 14 13
17 17 C 1.50691 * 120.00247 * 184.30727 * 15 14 13
18 18 H 1.08999 * 109.46924 * 40.00460 * 17 15 14
19 19 N 1.46907 * 109.47112 * 160.00095 * 17 15 14
20 20 C 1.53004 * 109.47598 * 280.00153 * 17 15 14
21 21 C 1.52996 * 109.47288 * 174.99561 * 20 17 15
22 22 C 1.50704 * 109.47206 * 180.02562 * 21 20 17
23 23 H 1.08004 * 119.99660 * 0.02562 * 22 21 20
24 24 C 1.37875 * 120.00254 * 180.02562 * 22 21 20
25 25 N 1.31518 * 119.99509 * 359.97438 * 24 22 21
26 26 Si 1.86794 * 120.00077 * 180.02562 * 24 22 21
27 27 H 1.48497 * 109.47104 * 359.97438 * 26 24 22
28 28 H 1.48497 * 109.47267 * 119.99923 * 26 24 22
29 29 H 1.48504 * 109.46824 * 239.99612 * 26 24 22
30 30 H 1.09000 * 109.47035 * 95.66599 * 1 2 3
31 31 H 1.08999 * 109.47261 * 215.66353 * 1 2 3
32 32 H 1.08998 * 109.47488 * 335.66488 * 1 2 3
33 33 H 1.08013 * 120.03022 * 0.25403 * 6 5 4
34 34 H 1.08000 * 119.96899 * 179.97438 * 7 6 5
35 35 H 1.07995 * 119.93670 * 180.02562 * 8 7 6
36 36 H 1.08001 * 119.96543 * 179.97438 * 9 8 7
37 37 H 1.07998 * 120.03524 * 180.02562 * 10 9 8
38 38 H 1.08995 * 109.47309 * 90.02762 * 12 11 4
39 39 H 1.09000 * 109.47433 * 210.03075 * 12 11 4
40 40 H 1.09000 * 109.46782 * 330.03051 * 12 11 4
41 41 H 0.97007 * 119.99185 * 71.39736 * 14 13 11
42 42 H 1.00895 * 110.99645 * 296.04862 * 19 17 15
43 43 H 1.00895 * 110.99372 * 60.00396 * 19 17 15
44 44 H 1.08995 * 109.46788 * 295.00465 * 20 17 15
45 45 H 1.08998 * 109.46565 * 54.99941 * 20 17 15
46 46 H 1.08999 * 109.47738 * 300.00676 * 21 20 17
47 47 H 1.09002 * 109.46786 * 60.00200 * 21 20 17
48 48 H 0.97010 * 119.99515 * 180.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2728 1.0612 0.0000
4 7 3.6091 0.6417 0.0006
5 6 4.7357 1.4755 0.0003
6 6 4.7094 2.6802 -0.6894
7 6 5.8209 3.4999 -0.6874
8 6 6.9595 3.1217 0.0001
9 6 6.9892 1.9219 0.6871
10 6 5.8808 1.0979 0.6888
11 6 3.6195 -0.7191 -0.0048
12 6 4.8418 -1.6005 -0.0126
13 6 2.3281 -1.1378 0.0008
14 7 1.8906 -2.4754 0.0003
15 6 1.3218 -2.9981 -1.1041
16 8 1.2576 -2.3413 -2.1219
17 6 0.7657 -4.3983 -1.0745
18 1 0.2609 -4.5688 -0.1236
19 7 -0.1926 -4.5680 -2.1749
20 6 1.9077 -5.4042 -1.2332
21 6 1.3612 -6.8249 -1.0785
22 6 2.4861 -7.8156 -1.2342
23 1 3.4904 -7.4667 -1.4240
24 6 2.2331 -9.1672 -1.1343
25 7 1.0101 -9.5919 -0.9026
26 14 3.6276 -10.3951 -1.3265
27 1 4.8970 -9.6670 -1.5784
28 1 3.7550 -11.1980 -0.0838
29 1 3.3390 -11.2966 -2.4708
30 1 -0.3633 -0.1015 -1.0226
31 1 -0.3634 -0.8349 0.5991
32 1 -0.3634 0.9363 0.4235
33 1 3.8189 2.9782 -1.2232
34 1 5.8011 4.4370 -1.2241
35 1 7.8273 3.7646 0.0005
36 1 7.8800 1.6290 1.2228
37 1 5.9044 0.1612 1.2258
38 1 5.1398 -1.8175 1.0131
39 1 4.6142 -2.5327 -0.5298
40 1 5.6554 -1.0889 -0.5268
41 1 1.9986 -3.0212 0.7949
42 1 -0.9888 -3.9593 -2.0580
43 1 0.2515 -4.4151 -3.0679
44 1 2.3555 -5.2926 -2.2206
45 1 2.6626 -5.2202 -0.4688
46 1 0.9132 -6.9364 -0.0911
47 1 0.6061 -7.0088 -1.8428
48 1 0.8322 -10.5429 -0.8320
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000424063321.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:41:33
Heat of formation + Delta-G solvation = 56.205878 kcal
Electronic energy + Delta-G solvation = -29094.065352 eV
Core-core repulsion = 25149.997461 eV
Total energy + Delta-G solvation = -3944.067891 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-41.95078 -39.79448 -39.14237 -35.38417 -34.87245 -34.17007 -32.80479 -32.01962
-31.26066 -30.33262 -30.09796 -27.65212 -27.36042 -26.08195 -23.90304 -23.14123
-22.72023 -21.05739 -20.22373 -20.00794 -19.66500 -18.01730 -17.34203 -16.82371
-16.33482 -16.14754 -15.88287 -15.41505 -15.00230 -14.73282 -14.43695 -14.43234
-14.12700 -13.99628 -13.86696 -13.60289 -13.46214 -13.33477 -13.15158 -12.68528
-12.55481 -12.34499 -12.30527 -12.03228 -11.93008 -11.58462 -11.55454 -11.10202
-10.92624 -10.69792 -10.54281 -10.17514 -10.08949 -9.82176 -9.51994 -9.45961
-9.38312 -8.99853 -8.95993 -8.42340 -8.27448 -8.14133 -5.95108 -3.97154
0.52254 0.87897 1.71199 2.00803 2.37055 2.77611 3.24487 3.32713
3.39018 3.40643 3.43974 4.26525 4.28859 4.45160 4.48648 4.52147
4.66254 4.71671 4.87812 4.90661 5.02997 5.08488 5.16363 5.17524
5.23417 5.40608 5.47314 5.48355 5.51296 5.57734 5.60273 5.68734
5.76158 5.81626 5.88026 5.96939 6.02748 6.15441 6.30665 6.40336
6.62091 6.75904 6.92974 7.06784 7.34817 7.42272 7.57276 7.75063
7.78427 7.95104 8.11950 8.34784 8.47061 9.11062 9.66088 11.15763
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.013861 B = 0.002381 C = 0.002096
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2019.508912 B =11758.497135 C =13357.489351
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 C 0.099 3.901
3 N -0.285 5.285
4 N -0.327 5.327
5 C 0.163 3.837
6 C -0.113 4.113
7 C -0.100 4.100
8 C -0.125 4.125
9 C -0.098 4.098
10 C -0.134 4.134
11 C 0.091 3.909
12 C -0.097 4.097
13 C 0.003 3.997
14 N -0.653 5.653
15 C 0.486 3.514
16 O -0.539 6.539
17 C 0.081 3.919
18 H 0.100 0.900
19 N -0.806 5.806
20 C -0.095 4.095
21 C 0.031 3.969
22 C -0.521 4.521
23 H 0.052 0.948
24 C 0.057 3.943
25 N -0.892 5.892
26 Si 0.888 3.112
27 H -0.274 1.274
28 H -0.285 1.285
29 H -0.285 1.285
30 H 0.082 0.918
31 H 0.078 0.922
32 H 0.074 0.926
33 H 0.133 0.867
34 H 0.131 0.869
35 H 0.128 0.872
36 H 0.133 0.867
37 H 0.133 0.867
38 H 0.085 0.915
39 H 0.091 0.909
40 H 0.077 0.923
41 H 0.409 0.591
42 H 0.334 0.666
43 H 0.348 0.652
44 H 0.053 0.947
45 H 0.053 0.947
46 H 0.013 0.987
47 H 0.035 0.965
48 H 0.259 0.741
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.874 25.629 5.485 27.367
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.070 4.070
3 N -0.105 5.105
4 N -0.104 5.104
5 C 0.071 3.929
6 C -0.133 4.133
7 C -0.119 4.119
8 C -0.144 4.144
9 C -0.117 4.117
10 C -0.154 4.154
11 C -0.034 4.034
12 C -0.155 4.155
13 C -0.100 4.100
14 N -0.304 5.304
15 C 0.273 3.727
16 O -0.414 6.414
17 C -0.035 4.035
18 H 0.118 0.882
19 N -0.333 5.333
20 C -0.134 4.134
21 C -0.006 4.006
22 C -0.560 4.560
23 H 0.070 0.930
24 C -0.144 4.144
25 N -0.531 5.531
26 Si 0.716 3.284
27 H -0.199 1.199
28 H -0.211 1.211
29 H -0.211 1.211
30 H 0.100 0.900
31 H 0.097 0.903
32 H 0.093 0.907
33 H 0.151 0.849
34 H 0.149 0.851
35 H 0.146 0.854
36 H 0.151 0.849
37 H 0.151 0.849
38 H 0.104 0.896
39 H 0.110 0.890
40 H 0.095 0.905
41 H 0.245 0.755
42 H 0.146 0.854
43 H 0.162 0.838
44 H 0.072 0.928
45 H 0.072 0.928
46 H 0.032 0.968
47 H 0.054 0.946
48 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges 7.697 26.443 4.998 27.990
hybrid contribution 1.000 -0.777 0.093 1.269
sum 8.697 25.666 5.091 27.573
Atomic orbital electron populations
1.20195 0.86122 1.03218 1.03538 1.22614 0.97302 0.89856 0.97234
1.77434 0.85129 1.21810 1.26121 1.45416 1.04228 1.03093 1.57657
1.17434 0.84601 0.91806 0.99022 1.21035 0.99743 0.93538 0.98956
1.21084 0.92447 0.99467 0.98871 1.21267 0.98446 0.96884 0.97807
1.21024 0.97733 0.93991 0.98917 1.21134 0.92715 1.01630 0.99951
1.21257 0.97200 0.83913 1.01064 1.20628 0.92711 0.98599 1.03533
1.16962 0.89774 0.85944 1.17318 1.43045 1.62091 1.08882 1.16378
1.23002 0.76719 0.90676 0.82344 1.90666 1.56937 1.62654 1.31170
1.21843 0.95798 0.88388 0.97471 0.88182 1.59012 1.09627 1.59809
1.04886 1.21667 0.93944 0.96961 1.00812 1.19022 0.96434 0.87397
0.97786 1.21306 0.94691 0.91297 1.48674 0.92961 1.24995 0.95361
0.98525 0.95503 1.69988 1.19086 1.14433 1.49608 0.86603 0.82634
0.81499 0.77632 1.19877 1.21116 1.21072 0.89953 0.90340 0.90702
0.84912 0.85065 0.85360 0.84916 0.84896 0.89639 0.88997 0.90458
0.75453 0.85399 0.83796 0.92841 0.92815 0.96821 0.94641 0.93157
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.81 10.42 36.01 0.38 -0.43 16
2 C 0.10 1.38 7.22 -82.22 -0.59 0.79 16
3 N -0.29 -4.15 12.33 33.76 0.42 -3.73 16
4 N -0.33 -4.34 3.76 -6.71 -0.03 -4.37 16
5 C 0.16 1.83 6.29 -83.60 -0.53 1.30 16
6 C -0.11 -1.14 9.76 -39.41 -0.38 -1.52 16
7 C -0.10 -0.75 10.04 -39.61 -0.40 -1.14 16
8 C -0.13 -0.81 10.04 -39.55 -0.40 -1.21 16
9 C -0.10 -0.67 10.04 -39.61 -0.40 -1.07 16
10 C -0.13 -1.17 8.30 -39.40 -0.33 -1.50 16
11 C 0.09 1.17 6.80 -81.60 -0.56 0.61 16
12 C -0.10 -0.95 8.56 36.00 0.31 -0.65 16
13 C 0.00 0.04 5.71 -83.87 -0.48 -0.44 16
14 N -0.65 -8.40 5.37 -10.03 -0.05 -8.45 16
15 C 0.49 7.45 7.03 -10.99 -0.08 7.38 16
16 O -0.54 -9.94 16.23 5.54 0.09 -9.85 16
17 C 0.08 1.29 3.15 -68.86 -0.22 1.08 16
18 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16
19 N -0.81 -13.12 8.44 -5.65 -0.05 -13.16 16
20 C -0.10 -1.84 4.78 -26.73 -0.13 -1.97 16
21 C 0.03 0.76 4.86 -27.88 -0.14 0.63 16
22 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16
23 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16
24 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16
25 N -0.89 -26.56 13.29 55.43 0.74 -25.83 16
26 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16
27 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16
28 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16
29 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16
30 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16
31 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16
32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16
33 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16
34 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16
35 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16
36 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16
37 H 0.13 1.01 6.15 -52.49 -0.32 0.68 16
38 H 0.09 0.64 7.76 -51.93 -0.40 0.24 16
39 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16
40 H 0.08 0.70 6.93 -51.93 -0.36 0.34 16
41 H 0.41 4.31 8.83 -40.82 -0.36 3.95 16
42 H 0.33 4.69 9.06 -39.29 -0.36 4.33 16
43 H 0.35 5.82 8.58 -39.29 -0.34 5.48 16
44 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16
45 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16
46 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16
47 H 0.04 0.96 7.75 -51.93 -0.40 0.56 16
48 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16
LS Contribution 406.35 15.07 6.12 6.12
Total: -1.00 -34.86 406.35 -9.28 -44.14
By element:
Atomic # 1 Polarization: 17.21 SS G_CDS: -7.16 Total: 10.05 kcal
Atomic # 6 Polarization: -7.02 SS G_CDS: -4.34 Total: -11.36 kcal
Atomic # 7 Polarization: -56.57 SS G_CDS: 1.03 Total: -55.54 kcal
Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.85 kcal
Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal
Total LS contribution 6.12 Total: 6.12 kcal
Total: -34.86 -9.28 -44.14 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000424063321.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 100.349 kcal
(2) G-P(sol) polarization free energy of solvation -34.862 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.487 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.281 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.143 kcal
(6) G-S(sol) free energy of system = (1) + (5) 56.206 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds