Wall clock time and date at job start Sat Apr 11 2020 06:41:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 N 1.30866 * 125.81287 * 2 1
4 4 N 1.40068 * 108.38454 * 179.97438 * 3 2 1
5 5 C 1.40156 * 126.06668 * 179.97438 * 4 3 2
6 6 C 1.38843 * 120.07008 * 325.02036 * 5 4 3
7 7 C 1.38106 * 119.93653 * 179.97438 * 6 5 4
8 8 C 1.38285 * 120.07019 * 0.02562 * 7 6 5
9 9 C 1.38285 * 120.12930 * 0.02562 * 8 7 6
10 10 C 1.38113 * 120.06865 * 359.97438 * 9 8 7
11 11 C 1.36082 * 107.86452 * 0.25526 * 4 3 2
12 12 C 1.50698 * 126.23636 * 179.70148 * 11 4 3
13 13 C 1.35758 * 107.52820 * 359.58194 * 11 4 3
14 14 N 1.40738 * 126.07593 * 180.11704 * 13 11 4
15 15 C 1.34772 * 120.00561 * 251.39944 * 14 13 11
16 16 O 1.21304 * 119.99592 * 4.31134 * 15 14 13
17 17 C 1.50691 * 120.00247 * 184.30727 * 15 14 13
18 18 H 1.08999 * 109.46924 * 40.00460 * 17 15 14
19 19 N 1.46907 * 109.47112 * 160.00095 * 17 15 14
20 20 C 1.53004 * 109.47598 * 280.00153 * 17 15 14
21 21 C 1.52996 * 109.47288 * 174.99561 * 20 17 15
22 22 C 1.50704 * 109.47206 * 180.02562 * 21 20 17
23 23 H 1.08004 * 119.99660 * 0.02562 * 22 21 20
24 24 C 1.37875 * 120.00254 * 180.02562 * 22 21 20
25 25 N 1.31518 * 119.99509 * 359.97438 * 24 22 21
26 26 Si 1.86794 * 120.00077 * 180.02562 * 24 22 21
27 27 H 1.48497 * 109.47104 * 359.97438 * 26 24 22
28 28 H 1.48497 * 109.47267 * 119.99923 * 26 24 22
29 29 H 1.48504 * 109.46824 * 239.99612 * 26 24 22
30 30 H 1.09000 * 109.47035 * 95.66599 * 1 2 3
31 31 H 1.08999 * 109.47261 * 215.66353 * 1 2 3
32 32 H 1.08998 * 109.47488 * 335.66488 * 1 2 3
33 33 H 1.08013 * 120.03022 * 0.25403 * 6 5 4
34 34 H 1.08000 * 119.96899 * 179.97438 * 7 6 5
35 35 H 1.07995 * 119.93670 * 180.02562 * 8 7 6
36 36 H 1.08001 * 119.96543 * 179.97438 * 9 8 7
37 37 H 1.07998 * 120.03524 * 180.02562 * 10 9 8
38 38 H 1.08995 * 109.47309 * 90.02762 * 12 11 4
39 39 H 1.09000 * 109.47433 * 210.03075 * 12 11 4
40 40 H 1.09000 * 109.46782 * 330.03051 * 12 11 4
41 41 H 0.97007 * 119.99185 * 71.39736 * 14 13 11
42 42 H 1.00895 * 110.99645 * 296.04862 * 19 17 15
43 43 H 1.00895 * 110.99372 * 60.00396 * 19 17 15
44 44 H 1.08995 * 109.46788 * 295.00465 * 20 17 15
45 45 H 1.08998 * 109.46565 * 54.99941 * 20 17 15
46 46 H 1.08999 * 109.47738 * 300.00676 * 21 20 17
47 47 H 1.09002 * 109.46786 * 60.00200 * 21 20 17
48 48 H 0.97010 * 119.99515 * 180.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2728 1.0612 0.0000
4 7 3.6091 0.6417 0.0006
5 6 4.7357 1.4755 0.0003
6 6 4.7094 2.6802 -0.6894
7 6 5.8209 3.4999 -0.6874
8 6 6.9595 3.1217 0.0001
9 6 6.9892 1.9219 0.6871
10 6 5.8808 1.0979 0.6888
11 6 3.6195 -0.7191 -0.0048
12 6 4.8418 -1.6005 -0.0126
13 6 2.3281 -1.1378 0.0008
14 7 1.8906 -2.4754 0.0003
15 6 1.3218 -2.9981 -1.1041
16 8 1.2576 -2.3413 -2.1219
17 6 0.7657 -4.3983 -1.0745
18 1 0.2609 -4.5688 -0.1236
19 7 -0.1926 -4.5680 -2.1749
20 6 1.9077 -5.4042 -1.2332
21 6 1.3612 -6.8249 -1.0785
22 6 2.4861 -7.8156 -1.2342
23 1 3.4904 -7.4667 -1.4240
24 6 2.2331 -9.1672 -1.1343
25 7 1.0101 -9.5919 -0.9026
26 14 3.6276 -10.3951 -1.3265
27 1 4.8970 -9.6670 -1.5784
28 1 3.7550 -11.1980 -0.0838
29 1 3.3390 -11.2966 -2.4708
30 1 -0.3633 -0.1015 -1.0226
31 1 -0.3634 -0.8349 0.5991
32 1 -0.3634 0.9363 0.4235
33 1 3.8189 2.9782 -1.2232
34 1 5.8011 4.4370 -1.2241
35 1 7.8273 3.7646 0.0005
36 1 7.8800 1.6290 1.2228
37 1 5.9044 0.1612 1.2258
38 1 5.1398 -1.8175 1.0131
39 1 4.6142 -2.5327 -0.5298
40 1 5.6554 -1.0889 -0.5268
41 1 1.9986 -3.0212 0.7949
42 1 -0.9888 -3.9593 -2.0580
43 1 0.2515 -4.4151 -3.0679
44 1 2.3555 -5.2926 -2.2206
45 1 2.6626 -5.2202 -0.4688
46 1 0.9132 -6.9364 -0.0911
47 1 0.6061 -7.0088 -1.8428
48 1 0.8322 -10.5429 -0.8320
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000424063321.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:41:32
Heat of formation + Delta-G solvation = 33.080787 kcal
Electronic energy + Delta-G solvation = -29095.068131 eV
Core-core repulsion = 25149.997461 eV
Total energy + Delta-G solvation = -3945.070670 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-42.89735 -40.91086 -39.92657 -36.82882 -36.02753 -35.08844 -34.77059 -32.81772
-31.92317 -31.88981 -31.14082 -28.72639 -28.32067 -27.55017 -25.47179 -23.82890
-23.54190 -22.56295 -21.40765 -21.10891 -20.70000 -18.89783 -18.75466 -18.04670
-17.64365 -17.15780 -16.95068 -16.61159 -16.43995 -15.78923 -15.62014 -15.58647
-15.17585 -14.93689 -14.81889 -14.59172 -14.44916 -14.25548 -14.15514 -13.91877
-13.77893 -13.48303 -13.38115 -13.32209 -13.14858 -12.80602 -12.52395 -12.48544
-12.29085 -12.21263 -11.99804 -11.73967 -11.62346 -11.21809 -10.97866 -10.91745
-10.59542 -10.46329 -10.06355 -9.89603 -9.61783 -9.10356 -8.10876 -6.20361
-0.20981 0.28119 0.85587 1.13801 1.31769 1.43288 1.44629 1.55577
1.57540 2.25027 2.47076 2.67665 3.22584 3.42311 3.44954 3.60899
3.75518 3.85717 3.90447 3.94831 4.14098 4.17361 4.27575 4.35745
4.37808 4.40578 4.48615 4.54656 4.60272 4.62931 4.72984 4.82675
4.90279 4.92003 4.96913 4.98453 5.14734 5.29648 5.30423 5.32466
5.45676 5.61587 5.66340 5.77197 5.89497 6.03150 6.10354 6.12014
6.34121 6.41034 6.47136 6.55688 6.99001 7.19042 7.47581 9.00424
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.013861 B = 0.002381 C = 0.002096
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2019.508912 B =11758.497135 C =13357.489351
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 C 0.084 3.916
3 N -0.313 5.313
4 N -0.327 5.327
5 C 0.125 3.875
6 C -0.133 4.133
7 C -0.101 4.101
8 C -0.117 4.117
9 C -0.095 4.095
10 C -0.137 4.137
11 C 0.090 3.910
12 C -0.094 4.094
13 C -0.025 4.025
14 N -0.634 5.634
15 C 0.497 3.503
16 O -0.571 6.571
17 C 0.091 3.909
18 H 0.116 0.884
19 N -0.817 5.817
20 C -0.082 4.082
21 C 0.039 3.961
22 C -0.539 4.539
23 H 0.057 0.943
24 C 0.000 4.000
25 N -0.930 5.930
26 Si 0.958 3.042
27 H -0.263 1.263
28 H -0.278 1.278
29 H -0.284 1.284
30 H 0.072 0.928
31 H 0.089 0.911
32 H 0.087 0.913
33 H 0.115 0.885
34 H 0.153 0.847
35 H 0.161 0.839
36 H 0.164 0.836
37 H 0.143 0.857
38 H 0.113 0.887
39 H 0.082 0.918
40 H 0.086 0.914
41 H 0.421 0.579
42 H 0.347 0.653
43 H 0.344 0.656
44 H 0.041 0.959
45 H 0.072 0.928
46 H -0.004 1.004
47 H 0.005 0.995
48 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.781 26.485 6.551 29.336
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.084 4.084
3 N -0.133 5.133
4 N -0.104 5.104
5 C 0.034 3.966
6 C -0.153 4.153
7 C -0.120 4.120
8 C -0.135 4.135
9 C -0.113 4.113
10 C -0.157 4.157
11 C -0.036 4.036
12 C -0.152 4.152
13 C -0.128 4.128
14 N -0.284 5.284
15 C 0.283 3.717
16 O -0.449 6.449
17 C -0.025 4.025
18 H 0.134 0.866
19 N -0.346 5.346
20 C -0.120 4.120
21 C 0.001 3.999
22 C -0.577 4.577
23 H 0.075 0.925
24 C -0.197 4.197
25 N -0.570 5.570
26 Si 0.783 3.217
27 H -0.187 1.187
28 H -0.204 1.204
29 H -0.210 1.210
30 H 0.091 0.909
31 H 0.108 0.892
32 H 0.105 0.895
33 H 0.133 0.867
34 H 0.171 0.829
35 H 0.179 0.821
36 H 0.182 0.818
37 H 0.161 0.839
38 H 0.131 0.869
39 H 0.101 0.899
40 H 0.104 0.896
41 H 0.260 0.740
42 H 0.160 0.840
43 H 0.158 0.842
44 H 0.060 0.940
45 H 0.090 0.910
46 H 0.015 0.985
47 H 0.023 0.977
48 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges 10.619 27.329 6.100 29.948
hybrid contribution 0.183 -0.926 -0.223 0.970
sum 10.802 26.403 5.877 29.127
Atomic orbital electron populations
1.20229 0.84874 1.04399 1.03211 1.22996 0.98355 0.89891 0.97173
1.77362 0.86182 1.22597 1.27202 1.45642 1.04284 1.03508 1.56944
1.17863 0.84929 0.92517 1.01254 1.21094 1.00333 0.94142 0.99725
1.21382 0.91908 0.99799 0.98866 1.21703 0.98800 0.96955 0.96084
1.21447 0.97948 0.93549 0.98361 1.21350 0.92366 1.02411 0.99582
1.21720 0.97904 0.84238 0.99727 1.20729 0.91703 0.97483 1.05236
1.17126 0.90400 0.85928 1.19313 1.42776 1.60793 1.08820 1.16047
1.22656 0.76569 0.90082 0.82404 1.90659 1.58345 1.63341 1.32527
1.21640 0.94792 0.87995 0.98081 0.86623 1.59005 1.10252 1.60507
1.04823 1.21406 0.95232 0.94642 1.00748 1.18836 0.95094 0.90356
0.95581 1.21763 0.95563 0.92239 1.48139 0.92516 1.25892 0.97891
1.00737 0.95222 1.70118 1.21255 1.14940 1.50727 0.85510 0.79703
0.78840 0.77637 1.18673 1.20386 1.20961 0.90896 0.89231 0.89458
0.86672 0.82932 0.82148 0.81848 0.83926 0.86918 0.89926 0.89556
0.74010 0.83959 0.84208 0.94017 0.90965 0.98540 0.97678 0.93039
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -1.56 10.42 71.24 0.74 -0.82 16
2 C 0.08 2.39 7.22 43.21 0.31 2.70 16
3 N -0.31 -9.39 12.33 -47.09 -0.58 -9.97 16
4 N -0.33 -8.76 3.76 -175.14 -0.66 -9.42 16
5 C 0.12 2.76 6.29 38.10 0.24 3.00 16
6 C -0.13 -2.70 9.76 22.38 0.22 -2.48 16
7 C -0.10 -1.33 10.04 22.25 0.22 -1.11 16
8 C -0.12 -1.13 10.04 22.29 0.22 -0.90 16
9 C -0.09 -0.98 10.04 22.25 0.22 -0.76 16
10 C -0.14 -2.14 8.30 22.39 0.19 -1.95 16
11 C 0.09 2.29 6.80 41.32 0.28 2.57 16
12 C -0.09 -1.71 8.56 71.24 0.61 -1.10 16
13 C -0.02 -0.68 5.71 37.64 0.22 -0.46 16
14 N -0.63 -15.84 5.37 -304.03 -1.63 -17.48 16
15 C 0.50 15.04 7.03 87.65 0.62 15.66 16
16 O -0.57 -21.21 16.23 -3.10 -0.05 -21.26 16
17 C 0.09 2.87 3.15 44.17 0.14 3.01 16
18 H 0.12 3.30 8.14 -2.39 -0.02 3.28 16
19 N -0.82 -26.83 8.44 -171.80 -1.45 -28.28 16
20 C -0.08 -3.14 4.78 30.59 0.15 -3.00 16
21 C 0.04 1.94 4.86 29.85 0.15 2.09 16
22 C -0.54 -29.86 9.11 25.60 0.23 -29.63 16
23 H 0.06 3.02 7.74 -2.91 -0.02 3.00 16
24 C 0.00 0.01 5.46 84.65 0.46 0.47 16
25 N -0.93 -56.04 13.29 21.45 0.28 -55.76 16
26 Si 0.96 43.80 29.54 68.60 2.03 45.82 16
27 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16
28 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16
29 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16
30 H 0.07 1.78 8.14 -2.39 -0.02 1.77 16
31 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16
32 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16
33 H 0.12 2.62 8.06 -2.90 -0.02 2.60 16
34 H 0.15 1.25 8.06 -2.91 -0.02 1.22 16
35 H 0.16 0.52 8.06 -2.91 -0.02 0.50 16
36 H 0.16 0.67 8.06 -2.91 -0.02 0.65 16
37 H 0.14 1.84 6.15 -2.91 -0.02 1.82 16
38 H 0.11 1.41 7.76 -2.39 -0.02 1.39 16
39 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16
40 H 0.09 1.41 6.93 -2.39 -0.02 1.39 16
41 H 0.42 8.30 8.83 -92.70 -0.82 7.48 16
42 H 0.35 9.73 9.06 -89.70 -0.81 8.92 16
43 H 0.34 11.75 8.58 -89.70 -0.77 10.98 16
44 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16
45 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16
46 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16
47 H 0.00 0.27 7.75 -2.39 -0.02 0.25 16
48 H 0.26 14.81 8.31 -92.70 -0.77 14.04 16
Total: -1.00 -77.00 406.35 1.76 -75.23
By element:
Atomic # 1 Polarization: 35.20 SS G_CDS: -1.39 Total: 33.81 kcal
Atomic # 6 Polarization: -17.91 SS G_CDS: 5.22 Total: -12.70 kcal
Atomic # 7 Polarization: -116.87 SS G_CDS: -4.04 Total: -120.91 kcal
Atomic # 8 Polarization: -21.21 SS G_CDS: -0.05 Total: -21.26 kcal
Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal
Total: -77.00 1.76 -75.23 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000424063321.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 108.315 kcal
(2) G-P(sol) polarization free energy of solvation -76.997 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.318 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.763 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.234 kcal
(6) G-S(sol) free energy of system = (1) + (5) 33.081 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds