Wall clock time and date at job start Sat Apr 11 2020 06:42:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53008 * 109.52116 * 2 1
4 4 C 1.53188 * 109.49081 * 239.91059 * 2 1 3
5 5 N 1.46930 * 108.76581 * 185.40039 * 4 2 1
6 6 C 1.36937 * 120.62808 * 233.59431 * 5 4 2
7 7 H 1.07996 * 119.99889 * 152.62861 * 6 5 4
8 8 C 1.38810 * 120.00074 * 332.62403 * 6 5 4
9 9 N 1.31617 * 119.99925 * 159.34279 * 8 6 5
10 10 Si 1.86797 * 120.00221 * 339.34816 * 8 6 5
11 11 H 1.48500 * 109.47503 * 92.88684 * 10 8 6
12 12 H 1.48502 * 109.47131 * 212.88971 * 10 8 6
13 13 H 1.48512 * 109.46981 * 332.88611 * 10 8 6
14 14 C 1.46926 * 118.74014 * 53.61328 * 5 4 2
15 15 C 1.53195 * 108.77417 * 306.39207 * 14 5 4
16 16 C 1.53038 * 109.31192 * 54.63795 * 15 14 5
17 17 H 1.08995 * 109.46472 * 58.63564 * 16 15 14
18 18 N 1.46503 * 109.46096 * 178.61174 * 16 15 14
19 19 C 1.34778 * 120.00026 * 275.02590 * 18 16 15
20 20 O 1.21593 * 119.99848 * 359.97438 * 19 18 16
21 21 C 1.47512 * 119.99798 * 179.97438 * 19 18 16
22 22 C 1.41048 * 119.39629 * 359.97438 * 21 19 18
23 23 C 1.35184 * 121.65640 * 180.02562 * 22 21 19
24 24 C 1.41386 * 119.93265 * 359.97438 * 23 22 21
25 25 N 1.31919 * 134.39752 * 179.97438 * 24 23 22
26 26 N 1.39918 * 109.06329 * 179.76846 * 25 24 23
27 27 H 0.96998 * 124.98793 * 180.24774 * 26 25 24
28 28 C 1.33814 * 110.02628 * 0.40346 * 26 25 24
29 29 C 1.38541 * 107.83867 * 359.60628 * 28 26 25
30 30 C 1.38218 * 119.39447 * 180.02562 * 21 19 18
31 31 H 1.09000 * 109.47405 * 299.91846 * 1 2 3
32 32 H 1.08996 * 109.46804 * 59.92419 * 1 2 3
33 33 H 1.09006 * 109.46670 * 179.91881 * 1 2 3
34 34 H 1.09005 * 109.46905 * 180.02562 * 3 2 1
35 35 H 1.09001 * 109.46674 * 300.07460 * 3 2 1
36 36 H 1.08998 * 109.47175 * 60.07571 * 3 2 1
37 37 H 1.09000 * 109.58804 * 65.61584 * 4 2 1
38 38 H 1.08997 * 109.71419 * 305.25498 * 4 2 1
39 39 H 0.97006 * 120.00340 * 180.02562 * 9 8 6
40 40 H 1.08995 * 109.58666 * 186.60598 * 14 5 4
41 41 H 1.09002 * 109.70363 * 66.24879 * 14 5 4
42 42 H 1.08997 * 109.50030 * 294.68496 * 15 14 5
43 43 H 1.08994 * 109.52251 * 174.60028 * 15 14 5
44 44 H 0.97001 * 119.99910 * 95.02226 * 18 16 15
45 45 H 1.08003 * 119.17004 * 0.04519 * 22 21 19
46 46 H 1.07999 * 120.03584 * 180.02562 * 23 22 21
47 47 H 1.08003 * 126.08028 * 179.86885 * 28 26 25
48 48 H 1.08006 * 120.32325 * 359.95237 * 30 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0413 1.4421 0.0000
4 6 2.0411 -0.7240 -1.2495
5 7 3.5045 -0.8290 -1.1695
6 6 4.2932 -0.3791 -2.1946
7 1 5.3001 -0.0440 -1.9940
8 6 3.7986 -0.3538 -3.4913
9 7 4.3568 0.4253 -4.3934
10 14 2.3408 -1.4253 -3.9560
11 1 1.0847 -0.6504 -3.7921
12 1 2.4750 -1.8573 -5.3705
13 1 2.3039 -2.6202 -3.0749
14 6 4.1054 -1.4262 0.0308
15 6 3.5708 -0.6945 1.2660
16 6 2.0408 -0.7230 1.2485
17 1 1.6970 -1.7572 1.2353
18 7 1.5264 -0.0528 2.4454
19 6 1.3978 -0.7382 3.5987
20 8 1.7083 -1.9129 3.6457
21 6 0.8804 -0.0632 4.8040
22 6 0.5246 1.2999 4.7352
23 6 0.0463 1.9635 5.8115
24 6 -0.1079 1.2894 7.0447
25 7 -0.5337 1.6422 8.2424
26 7 -0.4701 0.5343 9.0946
27 1 -0.7320 0.5353 10.0286
28 6 0.0081 -0.5259 8.4330
29 6 0.2593 -0.1340 7.1281
30 6 0.7541 -0.7779 5.9803
31 1 -0.3634 0.5126 0.8907
32 1 -0.3633 0.5150 -0.8893
33 1 -0.3633 -1.0277 -0.0015
34 1 3.1313 1.4411 -0.0005
35 1 1.6773 1.9566 -0.8893
36 1 1.6795 1.9559 0.8906
37 1 1.7634 -0.1584 -2.1389
38 1 1.6055 -1.7218 -1.3003
39 1 4.0109 0.4433 -5.2995
40 1 5.1896 -1.3239 -0.0138
41 1 3.8401 -2.4819 0.0882
42 1 3.9156 0.3395 1.2539
43 1 3.9335 -1.1884 2.1674
44 1 1.2784 0.8842 2.4078
45 1 0.6368 1.8266 3.7990
46 1 -0.2184 3.0073 5.7292
47 1 0.1658 -1.5129 8.8422
48 1 1.0310 -1.8212 6.0169
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000940988355.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:42:23
Heat of formation + Delta-G solvation = 84.550109 kcal
Electronic energy + Delta-G solvation = -30160.662355 eV
Core-core repulsion = 26217.823562 eV
Total energy + Delta-G solvation = -3942.838793 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-41.69537 -40.19642 -38.51642 -36.85257 -34.75516 -33.02640 -32.53554 -32.06773
-31.16119 -30.09143 -29.18715 -26.88753 -26.26005 -25.55725 -24.27401 -23.18746
-22.35606 -21.05595 -20.51935 -20.32988 -18.74496 -18.60798 -17.68193 -17.03199
-16.57538 -15.92400 -15.37759 -15.12501 -14.86480 -14.62470 -14.40839 -14.26840
-14.23131 -13.80635 -13.61987 -13.40781 -13.26235 -13.15018 -12.74891 -12.40211
-12.10782 -11.95649 -11.88550 -11.70554 -11.66045 -11.20696 -11.07688 -10.75143
-10.72070 -10.70698 -10.64189 -10.39525 -10.12786 -9.91003 -9.83238 -9.61518
-9.40294 -9.23415 -8.71904 -8.58814 -7.99851 -6.94356 -5.92747 -3.27909
0.14334 1.16229 1.97390 2.21708 2.91909 3.30788 3.33301 3.51020
3.54322 3.75398 3.85808 4.16011 4.55041 4.64450 4.73645 4.82293
4.95130 4.96317 4.99164 5.15266 5.22609 5.30140 5.33036 5.45570
5.73949 5.75607 5.78066 5.89003 5.97122 6.02963 6.04885 6.07592
6.14354 6.15924 6.27342 6.32480 6.38438 6.40728 6.46290 6.52485
6.56249 6.62280 6.68301 6.73698 6.83691 6.86537 7.06350 7.12463
7.70447 7.98614 8.35265 8.38584 8.96573 9.74645 10.12660 11.23200
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.028096 B = 0.002464 C = 0.002417
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 996.342515 B =11359.195033 C =11583.725085
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.089 4.089
3 C -0.130 4.130
4 C 0.140 3.860
5 N -0.603 5.603
6 C -0.255 4.255
7 H 0.086 0.914
8 C 0.024 3.976
9 N -0.908 5.908
10 Si 0.878 3.122
11 H -0.288 1.288
12 H -0.304 1.304
13 H -0.270 1.270
14 C 0.150 3.850
15 C -0.145 4.145
16 C 0.164 3.836
17 H 0.083 0.917
18 N -0.716 5.716
19 C 0.559 3.441
20 O -0.546 6.546
21 C -0.172 4.172
22 C -0.050 4.050
23 C -0.110 4.110
24 C 0.119 3.881
25 N -0.310 5.310
26 N -0.424 5.424
27 H 0.445 0.555
28 C 0.103 3.897
29 C -0.220 4.220
30 C 0.034 3.966
31 H 0.050 0.950
32 H 0.056 0.944
33 H 0.051 0.949
34 H 0.076 0.924
35 H 0.055 0.945
36 H 0.034 0.966
37 H 0.077 0.923
38 H 0.026 0.974
39 H 0.262 0.738
40 H 0.065 0.935
41 H 0.024 0.976
42 H 0.068 0.932
43 H 0.059 0.941
44 H 0.396 0.604
45 H 0.130 0.870
46 H 0.134 0.866
47 H 0.194 0.806
48 H 0.141 0.859
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.069 0.788 25.791 28.076
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.092 4.092
3 C -0.187 4.187
4 C 0.013 3.987
5 N -0.326 5.326
6 C -0.383 4.383
7 H 0.103 0.897
8 C -0.175 4.175
9 N -0.551 5.551
10 Si 0.708 3.292
11 H -0.216 1.216
12 H -0.232 1.232
13 H -0.195 1.195
14 C 0.024 3.976
15 C -0.185 4.185
16 C 0.060 3.940
17 H 0.101 0.899
18 N -0.367 5.367
19 C 0.347 3.653
20 O -0.425 6.425
21 C -0.177 4.177
22 C -0.073 4.073
23 C -0.131 4.131
24 C -0.035 4.035
25 N -0.137 5.137
26 N -0.123 5.123
27 H 0.290 0.710
28 C -0.056 4.056
29 C -0.230 4.230
30 C 0.013 3.987
31 H 0.070 0.930
32 H 0.075 0.925
33 H 0.071 0.929
34 H 0.095 0.905
35 H 0.074 0.926
36 H 0.053 0.947
37 H 0.095 0.905
38 H 0.044 0.956
39 H 0.072 0.928
40 H 0.084 0.916
41 H 0.042 0.958
42 H 0.086 0.914
43 H 0.078 0.922
44 H 0.232 0.768
45 H 0.147 0.853
46 H 0.151 0.849
47 H 0.210 0.790
48 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges -11.276 1.013 26.344 28.674
hybrid contribution -0.850 -0.752 -0.333 1.183
sum -12.126 0.261 26.011 28.700
Atomic orbital electron populations
1.21837 0.95107 1.01559 1.01294 1.21360 0.94596 0.97135 0.96072
1.21773 1.03138 0.93975 0.99822 1.21400 0.84976 0.96958 0.95320
1.44366 1.00549 1.69941 1.17764 1.18898 0.98484 1.35884 0.85070
0.89656 1.25264 0.97880 0.98671 0.95681 1.69833 1.43233 1.37955
1.04113 0.87027 0.82712 0.82645 0.76790 1.21614 1.23237 1.19482
1.20897 0.97281 0.94180 0.85248 1.22449 0.94601 1.02034 0.99385
1.20957 0.93980 0.96733 0.82308 0.89913 1.46201 1.65811 1.14465
1.10255 1.18111 0.77818 0.86322 0.83052 1.90765 1.50915 1.15912
1.84897 1.19573 1.08895 0.94615 0.94619 1.20702 0.95237 0.93078
0.98291 1.19730 1.04446 1.00017 0.88943 1.21069 0.96396 0.93024
0.93052 1.77669 1.29325 1.05752 1.01001 1.46345 1.45659 1.07122
1.13157 0.71038 1.22890 0.96534 0.93953 0.92234 1.19575 1.13782
0.95232 0.94426 1.20677 0.89919 0.99262 0.88861 0.93047 0.92501
0.92945 0.90531 0.92619 0.94708 0.90497 0.95601 0.92838 0.91641
0.95766 0.91360 0.92234 0.76786 0.85275 0.84857 0.78960 0.84173
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.02 8.31 37.16 0.31 -1.71 16
2 C -0.09 -1.49 0.56 -154.38 -0.09 -1.57 16
3 C -0.13 -2.09 7.83 37.16 0.29 -1.80 16
4 C 0.14 2.97 2.89 -3.71 -0.01 2.96 16
5 N -0.60 -13.91 2.21 -172.32 -0.38 -14.29 16
6 C -0.26 -6.94 10.03 -15.06 -0.15 -7.09 16
7 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16
8 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16
9 N -0.91 -27.46 13.97 55.49 0.78 -26.69 16
10 Si 0.88 22.21 24.34 -169.99 -4.14 18.07 16
11 H -0.29 -7.00 6.62 56.52 0.37 -6.62 16
12 H -0.30 -7.89 7.11 56.52 0.40 -7.48 16
13 H -0.27 -6.77 6.64 56.52 0.38 -6.39 16
14 C 0.15 2.99 6.52 -3.71 -0.02 2.96 16
15 C -0.14 -2.46 5.31 -26.61 -0.14 -2.61 16
16 C 0.16 2.64 1.57 -67.89 -0.11 2.53 16
17 H 0.08 1.49 7.57 -51.93 -0.39 1.10 16
18 N -0.72 -9.56 4.23 -54.81 -0.23 -9.80 16
19 C 0.56 7.94 7.71 -12.48 -0.10 7.84 16
20 O -0.55 -9.55 15.92 5.28 0.08 -9.47 16
21 C -0.17 -2.00 5.86 -105.06 -0.62 -2.62 16
22 C -0.05 -0.49 9.39 -39.60 -0.37 -0.86 16
23 C -0.11 -1.07 10.05 -39.47 -0.40 -1.47 16
24 C 0.12 1.27 7.49 -82.97 -0.62 0.65 16
25 N -0.31 -3.14 12.69 33.31 0.42 -2.72 16
26 N -0.42 -2.50 7.17 30.87 0.22 -2.28 16
27 H 0.45 0.84 8.96 -182.74 -1.64 -0.79 16
28 C 0.10 0.58 12.09 -16.58 -0.20 0.38 16
29 C -0.22 -2.07 6.32 -105.24 -0.66 -2.73 16
30 C 0.03 0.36 9.64 -38.70 -0.37 -0.01 16
31 H 0.05 0.63 7.36 -51.93 -0.38 0.24 16
32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16
33 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16
34 H 0.08 1.41 5.97 -51.93 -0.31 1.10 16
35 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16
36 H 0.03 0.44 6.58 -51.93 -0.34 0.10 16
37 H 0.08 1.79 4.50 -51.93 -0.23 1.56 16
38 H 0.03 0.56 7.07 -51.93 -0.37 0.20 16
39 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16
40 H 0.07 1.29 7.93 -51.93 -0.41 0.88 16
41 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16
42 H 0.07 1.16 6.33 -51.93 -0.33 0.83 16
43 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16
44 H 0.40 4.40 4.59 -40.82 -0.19 4.21 16
45 H 0.13 0.99 6.27 -52.48 -0.33 0.67 16
46 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16
47 H 0.19 0.22 8.06 -52.48 -0.42 -0.20 16
48 H 0.14 1.40 7.58 -52.48 -0.40 1.00 16
LS Contribution 371.60 15.07 5.60 5.60
Total: -1.00 -35.04 371.60 -8.89 -43.93
By element:
Atomic # 1 Polarization: 10.08 SS G_CDS: -7.89 Total: 2.19 kcal
Atomic # 6 Polarization: -1.21 SS G_CDS: -3.35 Total: -4.56 kcal
Atomic # 7 Polarization: -56.57 SS G_CDS: 0.81 Total: -55.77 kcal
Atomic # 8 Polarization: -9.55 SS G_CDS: 0.08 Total: -9.47 kcal
Atomic # 14 Polarization: 22.21 SS G_CDS: -4.14 Total: 18.07 kcal
Total LS contribution 5.60 Total: 5.60 kcal
Total: -35.04 -8.89 -43.93 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000940988355.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 128.485 kcal
(2) G-P(sol) polarization free energy of solvation -35.043 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.441 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.934 kcal
(6) G-S(sol) free energy of system = (1) + (5) 84.550 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds