Wall clock time and date at job start Sat Apr 11 2020 06:42:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53008 * 109.52116 * 2 1
4 4 C 1.53188 * 109.49081 * 239.91059 * 2 1 3
5 5 N 1.46930 * 108.76581 * 185.40039 * 4 2 1
6 6 C 1.36937 * 120.62808 * 233.59431 * 5 4 2
7 7 H 1.07996 * 119.99889 * 152.62861 * 6 5 4
8 8 C 1.38810 * 120.00074 * 332.62403 * 6 5 4
9 9 N 1.31617 * 119.99925 * 159.34279 * 8 6 5
10 10 Si 1.86797 * 120.00221 * 339.34816 * 8 6 5
11 11 H 1.48500 * 109.47503 * 92.88684 * 10 8 6
12 12 H 1.48502 * 109.47131 * 212.88971 * 10 8 6
13 13 H 1.48512 * 109.46981 * 332.88611 * 10 8 6
14 14 C 1.46926 * 118.74014 * 53.61328 * 5 4 2
15 15 C 1.53195 * 108.77417 * 306.39207 * 14 5 4
16 16 C 1.53038 * 109.31192 * 54.63795 * 15 14 5
17 17 H 1.08995 * 109.46472 * 58.63564 * 16 15 14
18 18 N 1.46503 * 109.46096 * 178.61174 * 16 15 14
19 19 C 1.34778 * 120.00026 * 275.02590 * 18 16 15
20 20 O 1.21593 * 119.99848 * 359.97438 * 19 18 16
21 21 C 1.47512 * 119.99798 * 179.97438 * 19 18 16
22 22 C 1.41048 * 119.39629 * 359.97438 * 21 19 18
23 23 C 1.35184 * 121.65640 * 180.02562 * 22 21 19
24 24 C 1.41386 * 119.93265 * 359.97438 * 23 22 21
25 25 N 1.31919 * 134.39752 * 179.97438 * 24 23 22
26 26 N 1.39918 * 109.06329 * 179.76846 * 25 24 23
27 27 H 0.96998 * 124.98793 * 180.24774 * 26 25 24
28 28 C 1.33814 * 110.02628 * 0.40346 * 26 25 24
29 29 C 1.38541 * 107.83867 * 359.60628 * 28 26 25
30 30 C 1.38218 * 119.39447 * 180.02562 * 21 19 18
31 31 H 1.09000 * 109.47405 * 299.91846 * 1 2 3
32 32 H 1.08996 * 109.46804 * 59.92419 * 1 2 3
33 33 H 1.09006 * 109.46670 * 179.91881 * 1 2 3
34 34 H 1.09005 * 109.46905 * 180.02562 * 3 2 1
35 35 H 1.09001 * 109.46674 * 300.07460 * 3 2 1
36 36 H 1.08998 * 109.47175 * 60.07571 * 3 2 1
37 37 H 1.09000 * 109.58804 * 65.61584 * 4 2 1
38 38 H 1.08997 * 109.71419 * 305.25498 * 4 2 1
39 39 H 0.97006 * 120.00340 * 180.02562 * 9 8 6
40 40 H 1.08995 * 109.58666 * 186.60598 * 14 5 4
41 41 H 1.09002 * 109.70363 * 66.24879 * 14 5 4
42 42 H 1.08997 * 109.50030 * 294.68496 * 15 14 5
43 43 H 1.08994 * 109.52251 * 174.60028 * 15 14 5
44 44 H 0.97001 * 119.99910 * 95.02226 * 18 16 15
45 45 H 1.08003 * 119.17004 * 0.04519 * 22 21 19
46 46 H 1.07999 * 120.03584 * 180.02562 * 23 22 21
47 47 H 1.08003 * 126.08028 * 179.86885 * 28 26 25
48 48 H 1.08006 * 120.32325 * 359.95237 * 30 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0413 1.4421 0.0000
4 6 2.0411 -0.7240 -1.2495
5 7 3.5045 -0.8290 -1.1695
6 6 4.2932 -0.3791 -2.1946
7 1 5.3001 -0.0440 -1.9940
8 6 3.7986 -0.3538 -3.4913
9 7 4.3568 0.4253 -4.3934
10 14 2.3408 -1.4253 -3.9560
11 1 1.0847 -0.6504 -3.7921
12 1 2.4750 -1.8573 -5.3705
13 1 2.3039 -2.6202 -3.0749
14 6 4.1054 -1.4262 0.0308
15 6 3.5708 -0.6945 1.2660
16 6 2.0408 -0.7230 1.2485
17 1 1.6970 -1.7572 1.2353
18 7 1.5264 -0.0528 2.4454
19 6 1.3978 -0.7382 3.5987
20 8 1.7083 -1.9129 3.6457
21 6 0.8804 -0.0632 4.8040
22 6 0.5246 1.2999 4.7352
23 6 0.0463 1.9635 5.8115
24 6 -0.1079 1.2894 7.0447
25 7 -0.5337 1.6422 8.2424
26 7 -0.4701 0.5343 9.0946
27 1 -0.7320 0.5353 10.0286
28 6 0.0081 -0.5259 8.4330
29 6 0.2593 -0.1340 7.1281
30 6 0.7541 -0.7779 5.9803
31 1 -0.3634 0.5126 0.8907
32 1 -0.3633 0.5150 -0.8893
33 1 -0.3633 -1.0277 -0.0015
34 1 3.1313 1.4411 -0.0005
35 1 1.6773 1.9566 -0.8893
36 1 1.6795 1.9559 0.8906
37 1 1.7634 -0.1584 -2.1389
38 1 1.6055 -1.7218 -1.3003
39 1 4.0109 0.4433 -5.2995
40 1 5.1896 -1.3239 -0.0138
41 1 3.8401 -2.4819 0.0882
42 1 3.9156 0.3395 1.2539
43 1 3.9335 -1.1884 2.1674
44 1 1.2784 0.8842 2.4078
45 1 0.6368 1.8266 3.7990
46 1 -0.2184 3.0073 5.7292
47 1 0.1658 -1.5129 8.8422
48 1 1.0310 -1.8212 6.0169
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000940988355.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:42:22
Heat of formation + Delta-G solvation = 60.530102 kcal
Electronic energy + Delta-G solvation = -30161.703941 eV
Core-core repulsion = 26217.823562 eV
Total energy + Delta-G solvation = -3943.880379 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-42.31604 -41.40859 -39.79208 -37.66897 -36.35775 -34.37317 -33.92141 -33.19706
-32.19785 -31.37431 -29.97958 -28.18678 -27.72376 -27.02169 -25.39730 -24.30702
-23.54294 -22.16016 -21.68177 -21.36513 -20.07519 -19.25523 -19.05182 -18.19567
-17.62331 -17.28417 -16.77543 -16.12873 -16.05648 -15.89778 -15.69991 -15.28709
-15.19389 -15.07675 -14.89835 -14.78138 -14.43159 -14.27271 -14.00013 -13.92673
-13.70378 -13.18129 -12.98879 -12.85319 -12.76947 -12.60064 -12.50835 -12.36608
-12.26468 -12.03634 -11.80145 -11.52412 -11.41353 -11.40451 -11.37865 -11.15778
-10.94634 -10.62401 -10.00471 -9.82925 -8.90531 -8.68921 -8.12976 -5.43790
-0.47654 0.40197 1.29889 1.36525 1.42760 1.50897 1.79784 2.00271
2.23017 2.43394 2.93476 3.08218 3.21974 3.35679 3.63722 3.67387
3.86992 3.93188 3.97841 4.11161 4.21826 4.31076 4.33935 4.40287
4.45164 4.53068 4.56167 4.60907 4.70714 4.80181 4.86391 4.89342
4.99198 5.03799 5.07979 5.09244 5.13691 5.22996 5.33934 5.36408
5.37096 5.38008 5.42965 5.57694 5.67110 5.74268 5.90616 6.16401
6.20749 6.51903 6.65898 6.93994 7.32581 7.65140 8.06343 9.06785
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.028096 B = 0.002464 C = 0.002417
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 996.342515 B =11359.195033 C =11583.725085
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.081 4.081
3 C -0.126 4.126
4 C 0.134 3.866
5 N -0.613 5.613
6 C -0.238 4.238
7 H 0.055 0.945
8 C -0.030 4.030
9 N -0.954 5.954
10 Si 0.936 3.064
11 H -0.271 1.271
12 H -0.313 1.313
13 H -0.267 1.267
14 C 0.147 3.853
15 C -0.132 4.132
16 C 0.175 3.825
17 H 0.067 0.933
18 N -0.705 5.705
19 C 0.562 3.438
20 O -0.584 6.584
21 C -0.198 4.198
22 C -0.047 4.047
23 C -0.122 4.122
24 C 0.102 3.898
25 N -0.347 5.347
26 N -0.409 5.409
27 H 0.463 0.537
28 C 0.141 3.859
29 C -0.253 4.253
30 C 0.044 3.956
31 H 0.079 0.921
32 H 0.058 0.942
33 H 0.051 0.949
34 H 0.049 0.951
35 H 0.044 0.956
36 H 0.075 0.925
37 H 0.056 0.944
38 H 0.024 0.976
39 H 0.260 0.740
40 H 0.059 0.941
41 H 0.027 0.973
42 H 0.070 0.930
43 H 0.064 0.936
44 H 0.409 0.591
45 H 0.147 0.853
46 H 0.146 0.854
47 H 0.244 0.756
48 H 0.142 0.858
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.333 0.544 29.142 32.052
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.083 4.083
3 C -0.183 4.183
4 C 0.009 3.991
5 N -0.337 5.337
6 C -0.368 4.368
7 H 0.072 0.928
8 C -0.225 4.225
9 N -0.601 5.601
10 Si 0.765 3.235
11 H -0.198 1.198
12 H -0.242 1.242
13 H -0.192 1.192
14 C 0.021 3.979
15 C -0.172 4.172
16 C 0.070 3.930
17 H 0.085 0.915
18 N -0.357 5.357
19 C 0.352 3.648
20 O -0.466 6.466
21 C -0.202 4.202
22 C -0.070 4.070
23 C -0.143 4.143
24 C -0.052 4.052
25 N -0.176 5.176
26 N -0.110 5.110
27 H 0.311 0.689
28 C -0.020 4.020
29 C -0.263 4.263
30 C 0.023 3.977
31 H 0.098 0.902
32 H 0.077 0.923
33 H 0.070 0.930
34 H 0.068 0.932
35 H 0.063 0.937
36 H 0.094 0.906
37 H 0.074 0.926
38 H 0.042 0.958
39 H 0.069 0.931
40 H 0.078 0.922
41 H 0.045 0.955
42 H 0.088 0.912
43 H 0.083 0.917
44 H 0.248 0.752
45 H 0.165 0.835
46 H 0.164 0.836
47 H 0.260 0.740
48 H 0.160 0.840
Dipole moment (debyes) X Y Z Total
from point charges -13.587 0.803 29.771 32.734
hybrid contribution -0.098 -0.734 -1.118 1.341
sum -13.685 0.068 28.653 31.753
Atomic orbital electron populations
1.21821 0.92741 1.02093 1.02812 1.21203 0.96393 0.96765 0.93980
1.21722 1.01400 0.93849 1.01339 1.21440 0.83690 0.97065 0.96927
1.44436 1.01310 1.70348 1.17588 1.18810 0.97695 1.34073 0.86186
0.92754 1.25795 1.00937 1.00001 0.95774 1.69950 1.45633 1.40030
1.04463 0.86075 0.80677 0.81056 0.75643 1.19786 1.24240 1.19182
1.21006 0.97093 0.94519 0.85257 1.22276 0.95514 1.01614 0.97801
1.20606 0.93046 0.96114 0.83208 0.91522 1.45944 1.65580 1.14940
1.09246 1.18473 0.76883 0.85824 0.83593 1.90742 1.52750 1.17639
1.85498 1.19401 1.11446 0.95559 0.93835 1.20785 0.94805 0.92293
0.99096 1.19929 1.04723 1.00725 0.88904 1.21368 0.96484 0.93889
0.93493 1.77607 1.30841 1.07733 1.01396 1.46418 1.44385 1.06353
1.13803 0.68871 1.23661 0.92498 0.95200 0.90625 1.19818 1.15648
0.95064 0.95750 1.20779 0.88640 0.99256 0.89054 0.90220 0.92334
0.92963 0.93177 0.93693 0.90635 0.92566 0.95800 0.93062 0.92221
0.95526 0.91189 0.91691 0.75234 0.83498 0.83641 0.74010 0.84033
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.57 8.31 71.98 0.60 -2.97 16
2 C -0.08 -2.58 0.56 -52.10 -0.03 -2.61 16
3 C -0.13 -3.86 7.83 71.98 0.56 -3.29 16
4 C 0.13 5.62 2.89 86.36 0.25 5.87 16
5 N -0.61 -28.56 2.21 -699.10 -1.54 -30.11 16
6 C -0.24 -13.33 10.03 84.03 0.84 -12.48 16
7 H 0.05 3.33 8.06 -2.91 -0.02 3.30 16
8 C -0.03 -1.76 5.23 84.86 0.44 -1.32 16
9 N -0.95 -59.61 13.97 21.65 0.30 -59.31 16
10 Si 0.94 46.74 24.34 68.60 1.67 48.41 16
11 H -0.27 -12.66 6.62 99.48 0.66 -12.00 16
12 H -0.31 -16.01 7.11 99.48 0.71 -15.30 16
13 H -0.27 -13.04 6.64 99.48 0.66 -12.38 16
14 C 0.15 5.87 6.52 86.36 0.56 6.43 16
15 C -0.13 -4.41 5.31 30.67 0.16 -4.24 16
16 C 0.18 5.39 1.57 45.02 0.07 5.46 16
17 H 0.07 2.33 7.57 -2.39 -0.02 2.31 16
18 N -0.71 -17.28 4.23 -445.59 -1.89 -19.16 16
19 C 0.56 15.07 7.71 86.69 0.67 15.74 16
20 O -0.58 -19.92 15.92 -4.01 -0.06 -19.99 16
21 C -0.20 -4.25 5.86 -20.15 -0.12 -4.37 16
22 C -0.05 -0.82 9.39 22.25 0.21 -0.61 16
23 C -0.12 -2.16 10.05 22.34 0.22 -1.93 16
24 C 0.10 1.98 7.49 42.27 0.32 2.30 16
25 N -0.35 -6.33 12.69 -48.54 -0.62 -6.95 16
26 N -0.41 -3.45 7.17 -56.25 -0.40 -3.85 16
27 H 0.46 0.08 8.96 -213.44 -1.91 -1.83 16
28 C 0.14 1.01 12.09 84.46 1.02 2.03 16
29 C -0.25 -4.10 6.32 -20.26 -0.13 -4.23 16
30 C 0.04 0.85 9.64 22.84 0.22 1.07 16
31 H 0.08 1.63 7.36 -2.39 -0.02 1.62 16
32 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16
33 H 0.05 1.37 8.14 -2.38 -0.02 1.36 16
34 H 0.05 1.81 5.97 -2.38 -0.01 1.79 16
35 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16
36 H 0.07 1.66 6.58 -2.39 -0.02 1.65 16
37 H 0.06 2.59 4.50 -2.39 -0.01 2.58 16
38 H 0.02 1.02 7.07 -2.39 -0.02 1.00 16
39 H 0.26 15.53 8.31 -92.70 -0.77 14.76 16
40 H 0.06 2.41 7.93 -2.39 -0.02 2.39 16
41 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16
42 H 0.07 2.32 6.33 -2.39 -0.02 2.31 16
43 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16
44 H 0.41 7.79 4.59 -92.71 -0.43 7.37 16
45 H 0.15 1.83 6.27 -2.91 -0.02 1.82 16
46 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16
47 H 0.24 -0.87 8.06 -2.91 -0.02 -0.89 16
48 H 0.14 2.58 7.58 -2.91 -0.02 2.56 16
Total: -1.00 -79.49 371.60 1.92 -77.57
By element:
Atomic # 1 Polarization: 13.96 SS G_CDS: -1.42 Total: 12.54 kcal
Atomic # 6 Polarization: -5.04 SS G_CDS: 5.88 Total: 0.84 kcal
Atomic # 7 Polarization: -115.22 SS G_CDS: -4.15 Total: -119.37 kcal
Atomic # 8 Polarization: -19.92 SS G_CDS: -0.06 Total: -19.99 kcal
Atomic # 14 Polarization: 46.74 SS G_CDS: 1.67 Total: 48.41 kcal
Total: -79.49 1.92 -77.57 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000940988355.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 138.100 kcal
(2) G-P(sol) polarization free energy of solvation -79.490 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.610 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.921 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.570 kcal
(6) G-S(sol) free energy of system = (1) + (5) 60.530 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds