Wall clock time and date at job start Sat Apr 11 2020 06:42:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.35455 * 126.38813 * 2 1
4 4 N 1.33180 * 108.62498 * 179.97438 * 3 2 1
5 5 C 1.32661 * 109.12300 * 359.97438 * 4 3 2
6 6 C 1.40650 * 132.14627 * 180.22972 * 5 4 3
7 7 C 1.38433 * 119.08598 * 180.20570 * 6 5 4
8 8 C 1.47652 * 120.37320 * 179.80398 * 7 6 5
9 9 O 1.21585 * 120.00013 * 359.71932 * 8 7 6
10 10 N 1.34775 * 120.00477 * 179.72390 * 8 7 6
11 11 C 1.46491 * 120.00346 * 179.97438 * 10 8 7
12 12 H 1.08999 * 109.46181 * 324.97115 * 11 10 8
13 13 C 1.53350 * 109.42533 * 84.86766 * 11 10 8
14 14 C 1.53190 * 109.15046 * 58.74932 * 13 11 10
15 15 N 1.46931 * 108.89391 * 54.57977 * 14 13 11
16 16 C 1.36932 * 120.63108 * 126.34027 * 15 14 13
17 17 H 1.07998 * 120.00257 * 209.05445 * 16 15 14
18 18 C 1.38815 * 120.00022 * 29.05218 * 16 15 14
19 19 N 1.31620 * 120.00010 * 15.04378 * 18 16 15
20 20 Si 1.86798 * 120.00070 * 195.04313 * 18 16 15
21 21 H 1.48503 * 109.47325 * 359.97438 * 20 18 16
22 22 H 1.48497 * 109.47084 * 120.00070 * 20 18 16
23 23 H 1.48498 * 109.47107 * 240.00011 * 20 18 16
24 24 C 1.46924 * 118.73672 * 306.32653 * 15 14 13
25 25 H 1.09002 * 109.58718 * 293.81244 * 24 15 14
26 26 C 1.52999 * 109.58825 * 173.39357 * 24 15 14
27 27 C 1.53048 * 109.46181 * 204.99724 * 11 10 8
28 28 C 1.41782 * 119.25538 * 359.52715 * 7 6 5
29 29 C 1.34533 * 120.14672 * 0.27170 * 28 7 6
30 30 N 1.36435 * 126.39624 * 179.97438 * 2 1 3
31 31 H 1.09000 * 109.46884 * 270.02582 * 1 2 3
32 32 H 1.08990 * 109.47346 * 30.02926 * 1 2 3
33 33 H 1.08999 * 109.46975 * 150.03045 * 1 2 3
34 34 H 1.08004 * 125.68503 * 359.96948 * 3 2 1
35 35 H 1.07997 * 120.45451 * 359.97438 * 6 5 4
36 36 H 0.97010 * 119.99476 * 359.97438 * 10 8 7
37 37 H 1.09002 * 109.68189 * 298.78981 * 13 11 10
38 38 H 1.08999 * 109.47956 * 178.58922 * 13 11 10
39 39 H 1.09006 * 109.58831 * 294.72750 * 14 13 11
40 40 H 1.09000 * 109.59385 * 174.43893 * 14 13 11
41 41 H 0.96996 * 120.00153 * 179.97438 * 19 18 16
42 42 H 1.09004 * 109.47399 * 59.99191 * 26 24 15
43 43 H 1.08996 * 109.47328 * 179.97438 * 26 24 15
44 44 H 1.09001 * 109.46880 * 299.99915 * 26 24 15
45 45 H 1.08994 * 109.50106 * 181.40771 * 27 11 10
46 46 H 1.08994 * 109.49532 * 61.30340 * 27 11 10
47 47 H 1.07999 * 119.92166 * 180.25306 * 28 7 6
48 48 H 1.08006 * 119.52224 * 179.97438 * 29 28 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3106 1.0904 0.0000
4 7 3.5789 0.6841 0.0006
5 6 3.6104 -0.6421 0.0015
6 6 4.6753 -1.5609 0.0065
7 6 4.3946 -2.9165 0.0018
8 6 5.4906 -3.9058 0.0026
9 8 6.6474 -3.5316 0.0022
10 7 5.2088 -5.2238 0.0036
11 6 6.2962 -6.2054 0.0038
12 1 7.1294 -5.8244 -0.5868
13 6 6.7621 -6.4501 1.4441
14 6 5.5787 -6.9538 2.2764
15 7 5.0023 -8.1341 1.6181
16 6 4.8378 -9.3063 2.3067
17 1 4.8739 -10.2500 1.7828
18 6 4.6246 -9.2815 3.6782
19 7 4.2866 -8.1563 4.2714
20 14 4.8173 -10.8452 4.6817
21 1 5.1995 -11.9652 3.7846
22 1 5.8738 -10.6485 5.7065
23 1 3.5312 -11.1650 5.3517
24 6 4.6054 -8.0328 0.2071
25 1 3.7710 -7.3380 0.1112
26 6 4.1900 -9.4118 -0.3092
27 6 5.7981 -7.5183 -0.6049
28 6 3.0428 -3.3441 0.0022
29 6 2.0477 -2.4388 0.0016
30 7 2.3166 -1.0982 0.0005
31 1 -0.3633 0.0005 1.0277
32 1 -0.3633 0.8896 -0.5142
33 1 -0.3633 -0.8903 -0.5134
34 1 1.9781 2.1180 -0.0005
35 1 5.6979 -1.2136 0.0102
36 1 4.2858 -5.5224 0.0042
37 1 7.1378 -5.5204 1.8714
38 1 7.5542 -7.1989 1.4477
39 1 4.8237 -6.1709 2.3492
40 1 5.9226 -7.2237 3.2748
41 1 4.1373 -8.1390 5.2297
42 1 3.3494 -9.7816 0.2780
43 1 3.8956 -9.3344 -1.3558
44 1 5.0288 -10.1019 -0.2174
45 1 6.5993 -8.2569 -0.5823
46 1 5.4894 -7.3471 -1.6361
47 1 2.8115 -4.3991 0.0027
48 1 1.0216 -2.7758 0.0015
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000947315047.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:42:08
Heat of formation + Delta-G solvation = 74.612239 kcal
Electronic energy + Delta-G solvation = -30086.917001 eV
Core-core repulsion = 26143.647270 eV
Total energy + Delta-G solvation = -3943.269731 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.180 amu
Computer time = 1.10 seconds
Orbital eigenvalues (eV)
-43.05843 -40.01083 -37.98470 -36.98895 -34.42677 -34.09480 -32.46007 -31.88320
-31.03144 -30.21774 -29.63305 -27.09373 -26.42270 -25.08856 -24.12788 -23.40584
-22.07276 -21.39163 -20.92084 -20.58722 -18.76093 -17.88314 -17.52592 -16.79154
-16.30590 -16.28832 -15.51964 -15.24117 -14.88003 -14.76441 -14.48249 -14.03146
-13.86310 -13.76309 -13.68925 -13.41646 -13.35813 -13.18683 -12.87907 -12.80866
-12.49409 -11.99218 -11.97756 -11.89311 -11.48416 -11.26772 -11.06882 -10.92854
-10.72908 -10.68728 -10.44696 -10.32241 -10.20490 -10.12658 -9.83748 -9.74165
-9.34681 -9.06193 -8.70882 -8.50891 -7.93793 -6.69485 -5.82646 -3.27070
0.34358 0.86194 2.30745 2.48297 2.90618 3.23982 3.33290 3.41983
3.42888 3.61749 4.04870 4.25006 4.34795 4.44106 4.57256 4.70842
4.78882 5.01168 5.15608 5.17262 5.25603 5.27510 5.31003 5.35776
5.45966 5.55966 5.60208 5.62567 5.82130 5.87205 5.93600 6.03604
6.16808 6.20241 6.24813 6.30850 6.36931 6.38591 6.50609 6.57612
6.71593 6.78997 6.88292 6.95099 6.98189 7.33585 7.61254 7.65093
7.71981 7.77808 8.36153 8.41107 9.16906 9.80365 10.36305 11.25240
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.014812 B = 0.002778 C = 0.002609
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1889.940448 B =10076.577267 C =10729.198127
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 C -0.065 4.065
3 C 0.033 3.967
4 N -0.478 5.478
5 C 0.208 3.792
6 C -0.003 4.003
7 C -0.118 4.118
8 C 0.562 3.438
9 O -0.539 6.539
10 N -0.703 5.703
11 C 0.154 3.846
12 H 0.075 0.925
13 C -0.154 4.154
14 C 0.174 3.826
15 N -0.587 5.587
16 C -0.250 4.250
17 H 0.070 0.930
18 C 0.003 3.997
19 N -0.902 5.902
20 Si 0.900 3.100
21 H -0.278 1.278
22 H -0.290 1.290
23 H -0.291 1.291
24 C 0.169 3.831
25 H 0.017 0.983
26 C -0.137 4.137
27 C -0.140 4.140
28 C -0.111 4.111
29 C 0.048 3.952
30 N -0.351 5.351
31 H 0.074 0.926
32 H 0.085 0.915
33 H 0.065 0.935
34 H 0.182 0.818
35 H 0.165 0.835
36 H 0.400 0.600
37 H 0.055 0.945
38 H 0.065 0.935
39 H 0.017 0.983
40 H 0.087 0.913
41 H 0.252 0.748
42 H 0.062 0.938
43 H 0.038 0.962
44 H 0.055 0.945
45 H 0.077 0.923
46 H 0.056 0.944
47 H 0.156 0.844
48 H 0.167 0.833
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.429 11.786 -11.146 17.842
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.179 4.179
3 C -0.121 4.121
4 N -0.198 5.198
5 C -0.033 4.033
6 C -0.025 4.025
7 C -0.127 4.127
8 C 0.348 3.652
9 O -0.418 6.418
10 N -0.355 5.355
11 C 0.050 3.950
12 H 0.093 0.907
13 C -0.194 4.194
14 C 0.049 3.951
15 N -0.310 5.310
16 C -0.380 4.380
17 H 0.088 0.912
18 C -0.196 4.196
19 N -0.547 5.547
20 Si 0.730 3.270
21 H -0.203 1.203
22 H -0.216 1.216
23 H -0.218 1.218
24 C 0.062 3.938
25 H 0.035 0.965
26 C -0.195 4.195
27 C -0.179 4.179
28 C -0.131 4.131
29 C -0.073 4.073
30 N -0.023 5.023
31 H 0.093 0.907
32 H 0.103 0.897
33 H 0.084 0.916
34 H 0.199 0.801
35 H 0.183 0.817
36 H 0.237 0.763
37 H 0.074 0.926
38 H 0.083 0.917
39 H 0.035 0.965
40 H 0.105 0.895
41 H 0.062 0.938
42 H 0.081 0.919
43 H 0.057 0.943
44 H 0.074 0.926
45 H 0.095 0.905
46 H 0.075 0.925
47 H 0.173 0.827
48 H 0.185 0.815
Dipole moment (debyes) X Y Z Total
from point charges -5.995 12.518 -10.971 17.692
hybrid contribution -1.165 -1.426 0.767 1.995
sum -7.160 11.092 -10.204 16.686
Atomic orbital electron populations
1.20199 0.86356 1.03539 1.02966 1.21346 0.94904 0.85272 1.16402
1.22362 0.87853 0.98684 1.03223 1.70675 1.21818 1.06113 1.21166
1.20708 0.83630 0.90911 1.08057 1.20676 0.98287 0.89432 0.94066
1.20032 0.93679 0.93620 1.05335 1.17810 0.87900 0.82531 0.76960
1.90779 1.20557 1.80036 1.50380 1.46035 1.11061 1.05032 1.73360
1.21004 0.88645 0.87425 0.97904 0.90677 1.22621 1.01090 1.00440
0.95298 1.20728 0.90579 0.87635 0.96191 1.44146 1.70532 1.10534
1.05803 1.19207 1.43156 0.85485 0.90151 0.91202 1.25078 0.99679
0.96689 0.98115 1.70014 1.49697 1.25388 1.09561 0.86266 0.77339
0.83083 0.80322 1.20284 1.21630 1.21824 1.20373 0.92286 0.94821
0.86341 0.96519 1.21808 1.01945 0.97535 0.98209 1.22380 1.01218
0.96045 0.98287 1.20886 0.90891 1.00373 1.01000 1.21399 1.01409
0.80101 1.04420 1.42716 1.08873 1.05756 1.44972 0.90733 0.89665
0.91603 0.80123 0.81744 0.76315 0.92637 0.91670 0.96481 0.89466
0.93756 0.91914 0.94301 0.92620 0.90477 0.92516 0.82701 0.81540
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.43 10.30 36.01 0.37 -0.06 16
2 C -0.06 -0.65 7.02 -81.54 -0.57 -1.22 16
3 C 0.03 0.36 11.75 -17.96 -0.21 0.15 16
4 N -0.48 -6.82 11.31 -12.80 -0.14 -6.96 16
5 C 0.21 2.91 7.79 -155.96 -1.22 1.69 16
6 C 0.00 -0.05 9.70 -38.60 -0.37 -0.42 16
7 C -0.12 -1.59 5.90 -104.63 -0.62 -2.21 16
8 C 0.56 8.91 7.74 -12.42 -0.10 8.81 16
9 O -0.54 -10.16 16.03 5.29 0.08 -10.07 16
10 N -0.70 -10.65 4.22 -54.61 -0.23 -10.88 16
11 C 0.15 2.53 2.78 -67.73 -0.19 2.35 16
12 H 0.08 1.25 7.58 -51.93 -0.39 0.85 16
13 C -0.15 -2.95 5.80 -26.45 -0.15 -3.11 16
14 C 0.17 3.94 5.02 -3.71 -0.02 3.92 16
15 N -0.59 -13.29 2.99 -164.77 -0.49 -13.78 16
16 C -0.25 -6.34 8.60 -15.06 -0.13 -6.47 16
17 H 0.07 1.74 6.21 -52.49 -0.33 1.41 16
18 C 0.00 0.08 4.96 -17.43 -0.09 -0.01 16
19 N -0.90 -25.10 11.14 55.49 0.62 -24.48 16
20 Si 0.90 21.00 29.58 -169.99 -5.03 15.97 16
21 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16
22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16
24 C 0.17 3.06 3.20 -67.60 -0.22 2.84 16
25 H 0.02 0.30 6.64 -51.93 -0.34 -0.04 16
26 C -0.14 -2.32 7.94 37.16 0.30 -2.02 16
27 C -0.14 -2.17 5.08 -26.61 -0.14 -2.31 16
28 C -0.11 -1.20 9.48 -39.54 -0.37 -1.58 16
29 C 0.05 0.47 10.80 -16.68 -0.18 0.29 16
30 N -0.35 -4.12 2.94 -58.55 -0.17 -4.30 16
31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16
32 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16
33 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16
34 H 0.18 1.35 8.06 -52.48 -0.42 0.92 16
35 H 0.17 2.28 7.67 -52.49 -0.40 1.88 16
36 H 0.40 5.53 4.93 -40.82 -0.20 5.32 16
37 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16
38 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16
39 H 0.02 0.40 7.74 -51.93 -0.40 0.00 16
40 H 0.09 2.28 6.06 -51.93 -0.31 1.97 16
41 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16
42 H 0.06 1.16 7.62 -51.93 -0.40 0.76 16
43 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16
44 H 0.05 0.97 7.45 -51.93 -0.39 0.58 16
45 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16
46 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16
47 H 0.16 1.41 6.46 -52.49 -0.34 1.07 16
48 H 0.17 1.07 8.04 -52.48 -0.42 0.65 16
LS Contribution 381.26 15.07 5.75 5.75
Total: -1.00 -32.12 381.26 -10.39 -42.51
By element:
Atomic # 1 Polarization: 12.48 SS G_CDS: -6.87 Total: 5.61 kcal
Atomic # 6 Polarization: 4.54 SS G_CDS: -3.90 Total: 0.64 kcal
Atomic # 7 Polarization: -59.98 SS G_CDS: -0.42 Total: -60.40 kcal
Atomic # 8 Polarization: -10.16 SS G_CDS: 0.08 Total: -10.07 kcal
Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal
Total LS contribution 5.75 Total: 5.75 kcal
Total: -32.12 -10.39 -42.51 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000947315047.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 117.124 kcal
(2) G-P(sol) polarization free energy of solvation -32.122 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.003 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.390 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.512 kcal
(6) G-S(sol) free energy of system = (1) + (5) 74.612 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.10 seconds